; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G002800 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G002800
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription factor bHLH61 isoform 1
Genome locationchr03:3418724..3420148
RNA-Seq ExpressionLsi03G002800
SyntenyLsi03G002800
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138402.1 uncharacterized protein LOC101218918 isoform X2 [Cucumis sativus]1.0e-6589.51Show/hide
Query:  MVSREHKN-AALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISH-HSPMVTVERLVKGFSINVFSEKSCQGLLVS
        MVSREHK  AALH+ LQLLRSITNSH+LNKASIIVDASKYIEELKQKVERLNQDISTVQNS   NP+SH +SPMVTVER+VKGFSINVFSEKSCQGLLVS
Subjt:  MVSREHKN-AALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISH-HSPMVTVERLVKGFSINVFSEKSCQGLLVS

Query:  ILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD
        ILEVFEELGLNVIEARVSCT +FQLQAIGEIEEEGEE IDAQ VKEAVVQAIKSWSQ+GEQD
Subjt:  ILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD

XP_038884496.1 uncharacterized protein LOC120075304 isoform X1 [Benincasa hispida]3.4e-6993.25Show/hide
Query:  MVSREHKNAALHEKLQLLRSITNSHA-LNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISH-HSPM-VTVERLVKGFSINVFSEKSCQGLLV
        MVSREHK A LHEKLQLLRSITNSHA LNKASIIVDASKYIEELKQKVERLNQDISTVQNSIH NP+SH +SPM VTVERLVKGFSINVFSEKSCQGLLV
Subjt:  MVSREHKNAALHEKLQLLRSITNSHA-LNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISH-HSPM-VTVERLVKGFSINVFSEKSCQGLLV

Query:  SILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD
        SILEVFEELGLNVIEARVSCTD+FQLQAI EIEEEGEEAIDAQAVKEAVVQAIKSW QSGEQD
Subjt:  SILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD

XP_038884497.1 uncharacterized protein LOC120075304 isoform X2 [Benincasa hispida]1.4e-7093.83Show/hide
Query:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISH-HSPM-VTVERLVKGFSINVFSEKSCQGLLVS
        MVSREHK A LHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIH NP+SH +SPM VTVERLVKGFSINVFSEKSCQGLLVS
Subjt:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISH-HSPM-VTVERLVKGFSINVFSEKSCQGLLVS

Query:  ILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD
        ILEVFEELGLNVIEARVSCTD+FQLQAI EIEEEGEEAIDAQAVKEAVVQAIKSW QSGEQD
Subjt:  ILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD

XP_038884498.1 uncharacterized protein LOC120075304 isoform X3 [Benincasa hispida]1.4e-7093.83Show/hide
Query:  MVSREHKNAALHEKLQLLRSITNSHA-LNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISH-HSPMVTVERLVKGFSINVFSEKSCQGLLVS
        MVSREHK A LHEKLQLLRSITNSHA LNKASIIVDASKYIEELKQKVERLNQDISTVQNSIH NP+SH +SPMVTVERLVKGFSINVFSEKSCQGLLVS
Subjt:  MVSREHKNAALHEKLQLLRSITNSHA-LNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISH-HSPMVTVERLVKGFSINVFSEKSCQGLLVS

Query:  ILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD
        ILEVFEELGLNVIEARVSCTD+FQLQAI EIEEEGEEAIDAQAVKEAVVQAIKSW QSGEQD
Subjt:  ILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD

XP_038884499.1 uncharacterized protein LOC120075304 isoform X4 [Benincasa hispida]5.6e-7294.41Show/hide
Query:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISH-HSPMVTVERLVKGFSINVFSEKSCQGLLVSI
        MVSREHK A LHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIH NP+SH +SPMVTVERLVKGFSINVFSEKSCQGLLVSI
Subjt:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISH-HSPMVTVERLVKGFSINVFSEKSCQGLLVSI

Query:  LEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD
        LEVFEELGLNVIEARVSCTD+FQLQAI EIEEEGEEAIDAQAVKEAVVQAIKSW QSGEQD
Subjt:  LEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD

TrEMBL top hitse value%identityAlignment
A0A6J1HIH6 uncharacterized protein LOC111464709 isoform X15.5e-6586.88Show/hide
Query:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSIL
        MVSREHK AALHEKLQLLRSITNSHALNK SIIVDASKYIEELKQKVERLNQDI+TVQNSIH N    H   VTVE LVKGFSINVFSEKSCQGLLVSIL
Subjt:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSIL

Query:  EVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD
        E FEELGLNV+EARVSCTD+FQLQA  EIEE+GEEA+DAQAVKEAVV+AIKSWSQ+GEQD
Subjt:  EVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD

A0A6J1HJR0 uncharacterized protein LOC111464709 isoform X21.5e-6587.5Show/hide
Query:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSIL
        MVSREHK AALHEKLQLLRSITNSHALNK SIIVDASKYIEELKQKVERLNQDI+TVQNSIH N      PMVTVE LVKGFSINVFSEKSCQGLLVSIL
Subjt:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSIL

Query:  EVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD
        E FEELGLNV+EARVSCTD+FQLQA  EIEE+GEEA+DAQAVKEAVV+AIKSWSQ+GEQD
Subjt:  EVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD

A0A6J1JTS8 uncharacterized protein LOC111487778 isoform X21.5e-6587.5Show/hide
Query:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSIL
        MVSREHK AALHEKLQLLRSITNSHALNK SIIVDASKYIEELKQKVERLNQDI+TVQNSIH N      PMVTVE LVKGFSINVFSEKSCQGLLVSIL
Subjt:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSIL

Query:  EVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD
        E FEELGLNV+EARVSCTD+FQLQA  EIEE+GEEA+DAQAVKEAVV+AIKSWSQ+GEQD
Subjt:  EVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD

A0A6J1JUG1 uncharacterized protein LOC111489817 isoform X45.5e-6588.75Show/hide
Query:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSIL
        MVSREH NAALH  LQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQ SIH        PMVTVE L KGFSINVFSEKSCQGLLVSIL
Subjt:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSIL

Query:  EVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD
        E FEELGLNV+EARVSCTDSFQLQAI EIEEEGEEAIDAQAVKEAVVQAIK WSQSGEQD
Subjt:  EVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD

A0A6J1JV46 uncharacterized protein LOC111487778 isoform X15.5e-6586.88Show/hide
Query:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSIL
        MVSREHK AALHEKLQLLRSITNSHALNK SIIVDASKYIEELKQKVERLNQDI+TVQNSIH N    H   VTVE LVKGFSINVFSEKSCQGLLVSIL
Subjt:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSIL

Query:  EVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD
        E FEELGLNV+EARVSCTD+FQLQA  EIEE+GEEA+DAQAVKEAVV+AIKSWSQ+GEQD
Subjt:  EVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD

SwissProt top hitse value%identityAlignment
Q9LSL1 Transcription factor bHLH935.6e-0625.31Show/hide
Query:  MVSREHKNAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERL---NQDISTVQNSIH------------QNPISHHSPMVTVERLVKGFSI
        +++   +   L+++L +LRSI      +++ SI+ DA  Y++EL  K+ +L    Q++    NS H              P+  +SP   ++R  +   +
Subjt:  MVSREHKNAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERL---NQDISTVQNSIH------------QNPISHHSPMVTVERLVKGFSI

Query:  NVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAV
        ++       GLL+S +   E LGL + +  +SC   F LQA      E  + I ++ +K+A+
Subjt:  NVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAV

Q9LXA9 Transcription factor bHLH612.5e-0626.62Show/hide
Query:  MVSREHKNAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMV--TVERLVKGFSINVFSEKSC---QG
        +++   +   L+++L LLRSI      +++ SI+ DA  Y++EL  K+ +L +D   + ++ H + +  +  MV  +++  V    +N   +  C    G
Subjt:  MVSREHKNAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMV--TVERLVKGFSINVFSEKSC---QG

Query:  LLVSILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQ
        L+VS +   E LGL + +  +SC   F LQA      E    + ++A K+A+++
Subjt:  LLVSILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQ

Arabidopsis top hitse value%identityAlignment
AT1G29270.1 unknown protein7.7e-1134.38Show/hide
Query:  MVSREHKNAALHEKLQLLRSITN-SHALNKASIIV-DASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVS
        MV+ E K  A   K   L+++T+   ++++ S+++ +A  YI  LK ++E L ++   ++  I +    H    V VE++ + F + + S +  +  LV+
Subjt:  MVSREHKNAALHEKLQLLRSITN-SHALNKASIIV-DASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVS

Query:  ILEVFEELGLNVIEARVSCTDSFQLQAI
        ILE FEE+GLNV +AR SC DSF ++AI
Subjt:  ILEVFEELGLNVIEARVSCTDSFQLQAI

AT2G40435.1 BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1)1.5e-4362.58Show/hide
Query:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSIL
        MVSRE K  +L EK QLLRSITNSHA N  SII+DASKYI++LKQKVER NQD +  Q+S    P    +PMVTVE L KGF INVFS K+  G+LVS+L
Subjt:  MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSIL

Query:  EVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQ
        E FE++GLNV+EAR SCTDSF L A+G +E E  E +DA+AVK+AV  AI+SW +
Subjt:  EVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQ

AT3G56220.1 transcription regulators6.7e-3957.32Show/hide
Query:  MVSREHK-NAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSI
        MVSREHK  ++L EK  LLRSIT+SHA ++ SIIVDASKYI++LKQKVE++N + +T + S  ++  S  +PMVTVE L KGF I V S K+  G+LV +
Subjt:  MVSREHK-NAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSI

Query:  LEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQS
        LE FE+LGL+V+EARVSCTD+F L AIG    +  + IDA+AVK+AV +AI++WS S
Subjt:  LEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQS

AT5G10570.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.8e-0726.62Show/hide
Query:  MVSREHKNAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMV--TVERLVKGFSINVFSEKSC---QG
        +++   +   L+++L LLRSI      +++ SI+ DA  Y++EL  K+ +L +D   + ++ H + +  +  MV  +++  V    +N   +  C    G
Subjt:  MVSREHKNAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMV--TVERLVKGFSINVFSEKSC---QG

Query:  LLVSILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQ
        L+VS +   E LGL + +  +SC   F LQA      E    + ++A K+A+++
Subjt:  LLVSILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQ

AT5G65640.1 beta HLH protein 934.0e-0725.31Show/hide
Query:  MVSREHKNAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERL---NQDISTVQNSIH------------QNPISHHSPMVTVERLVKGFSI
        +++   +   L+++L +LRSI      +++ SI+ DA  Y++EL  K+ +L    Q++    NS H              P+  +SP   ++R  +   +
Subjt:  MVSREHKNAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERL---NQDISTVQNSIH------------QNPISHHSPMVTVERLVKGFSI

Query:  NVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAV
        ++       GLL+S +   E LGL + +  +SC   F LQA      E  + I ++ +K+A+
Subjt:  NVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTAGAGAGCACAAGAACGCAGCTCTGCATGAGAAGCTTCAATTACTTCGCTCTATTACCAACTCTCATGCTCTAAACAAGGCCTCGATTATAGTGGATGCATC
AAAATATATCGAGGAGCTAAAACAGAAAGTAGAAAGATTGAATCAAGATATATCAACCGTTCAAAATTCAATCCACCAAAATCCAATTTCTCATCATTCTCCCATGGTTA
CAGTGGAAAGGCTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAAAAGAGTTGTCAAGGGCTTCTTGTCTCCATATTAGAAGTGTTTGAAGAGCTGGGGCTTAATGTC
ATTGAAGCTAGGGTTTCCTGTACTGATAGTTTCCAATTACAAGCTATTGGAGAAATTGAAGAAGAAGGAGAAGAAGCCATTGATGCTCAAGCTGTGAAAGAAGCAGTAGT
TCAAGCTATAAAGAGCTGGAGCCAAAGCGGTGAACAAGATTAA
mRNA sequenceShow/hide mRNA sequence
TGGGAAGCTAGCAAACAGAAAAGATCATATAGATTTGAGGGCTCATCATACCCTTATAAAACACACCTCTAAGTTTTTTTCTTTTTTGCAGAGATATTACAAAAGAAAAA
AAAAAAAAAAAAAAAAAAAGATATAAAGAGAAAGAAAGAAAAAGAGTTGAATCCATGGTTTCTAGAGAGCACAAGAACGCAGCTCTGCATGAGAAGCTTCAATTACTTCG
CTCTATTACCAACTCTCATGCTCTAAACAAGGCCTCGATTATAGTGGATGCATCAAAATATATCGAGGAGCTAAAACAGAAAGTAGAAAGATTGAATCAAGATATATCAA
CCGTTCAAAATTCAATCCACCAAAATCCAATTTCTCATCATTCTCCCATGGTTACAGTGGAAAGGCTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAAAAGAGTTGT
CAAGGGCTTCTTGTCTCCATATTAGAAGTGTTTGAAGAGCTGGGGCTTAATGTCATTGAAGCTAGGGTTTCCTGTACTGATAGTTTCCAATTACAAGCTATTGGAGAAAT
TGAAGAAGAAGGAGAAGAAGCCATTGATGCTCAAGCTGTGAAAGAAGCAGTAGTTCAAGCTATAAAGAGCTGGAGCCAAAGCGGTGAACAAGATTAATAATAATCAACTC
TCTAGAAGGAGAATTATTATTATTCAAAAAAAAAAAATCCTTAATTTCTCCAACTTATTCCCATCGCGGCGTTTCCTCCCCCCCCCCC
Protein sequenceShow/hide protein sequence
MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNV
IEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD