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Lsi03G003350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G003350
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein of unknown function (DUF3245)
Genome locationchr03:3981769..3984854
RNA-Seq ExpressionLsi03G003350
SyntenyLsi03G003350
Gene Ontology termsNA
InterPro domainsIPR021641 - Protein of unknown function DUF3245


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK03014.1 putative RNA binding protein [Cucumis melo var. makuwa]4.7e-6290.14Show/hide
Query:  SNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTP
        SNM+RPQK RPPEIIKLNDAAKLAAQLMSKMTNSEWKET VDNESTAIEPE+RPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSE+TP
Subjt:  SNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTP

Query:  VLNNKDDDDDDDDEESRTSIFDKKRAAKPV-MPPMRGKKKRR
        VL+NKDDD DD++EESRT+IF+KKRAAKPV MPP +GKKKRR
Subjt:  VLNNKDDDDDDDDEESRTSIFDKKRAAKPV-MPPMRGKKKRR
XP_004138501.1 uncharacterized protein LOC101222227 isoform X2 [Cucumis sativus]1.7e-5988.03Show/hide
Query:  MDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVL
        M+RPQK RPPE+IKLNDAAKLAAQLMSKMTNSEWKET VD+ESTAIEPE+RPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTP+L
Subjt:  MDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVL

Query:  NNKDDDDDDDD--EESRTSIFDKKRAAKPV-MPPMRGKKKRR
        N KDD+DDDDD  EESRT+IF KKRA KPV MPP++GKKKRR
Subjt:  NNKDDDDDDDD--EESRTSIFDKKRAAKPV-MPPMRGKKKRR
XP_008458228.1 PREDICTED: uncharacterized protein LOC103497715 [Cucumis melo]6.8e-6190Show/hide
Query:  MDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVL
        M+RPQK RPPEIIKLNDAAKLAAQLMSKMTNSEWKET VDNESTAIEPE+RPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSE+TPVL
Subjt:  MDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVL

Query:  NNKDDDDDDDDEESRTSIFDKKRAAKPV-MPPMRGKKKRR
        +NKDDD DD++EESRT+IF+KKRAAKPV MPP +GKKKRR
Subjt:  NNKDDDDDDDDEESRTSIFDKKRAAKPV-MPPMRGKKKRR
XP_031743839.1 uncharacterized protein LOC101222227 isoform X1 [Cucumis sativus]2.3e-6187.67Show/hide
Query:  MSSNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSED
        +SSNM+RPQK RPPE+IKLNDAAKLAAQLMSKMTNSEWKET VD+ESTAIEPE+RPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSED
Subjt:  MSSNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSED

Query:  TPVLNNKDDDDDDDD--EESRTSIFDKKRAAKPV-MPPMRGKKKRR
        TP+LN KDD+DDDDD  EESRT+IF KKRA KPV MPP++GKKKRR
Subjt:  TPVLNNKDDDDDDDD--EESRTSIFDKKRAAKPV-MPPMRGKKKRR
XP_038906622.1 uncharacterized protein LOC120092570 isoform X1 [Benincasa hispida]7.1e-5884.93Show/hide
Query:  MSSNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSED
        MSS M RPQK RPPEIIKLNDAAKLAAQLMSKMTNSEWKE+ VDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKL+AKL AGKKQA+ KMSED
Subjt:  MSSNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSED

Query:  TPVLNNKDDDDDD--DDEESRTSIFDKKRAAKPV-MPPMRGKKKRR
        TPVLNNKDDD DD  ++EESRT++F+KKRAAKP+ M P++GKKKRR
Subjt:  TPVLNNKDDDDDD--DDEESRTSIFDKKRAAKPV-MPPMRGKKKRR
TrEMBL top hitse value%identityAlignment
A0A0A0K9Y5 Uncharacterized protein8.2e-6088.03Show/hide
Query:  MDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVL
        M+RPQK RPPE+IKLNDAAKLAAQLMSKMTNSEWKET VD+ESTAIEPE+RPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTP+L
Subjt:  MDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVL

Query:  NNKDDDDDDDD--EESRTSIFDKKRAAKPV-MPPMRGKKKRR
        N KDD+DDDDD  EESRT+IF KKRA KPV MPP++GKKKRR
Subjt:  NNKDDDDDDDD--EESRTSIFDKKRAAKPV-MPPMRGKKKRR
A0A1S3C7D1 uncharacterized protein LOC1034977153.3e-6190Show/hide
Query:  MDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVL
        M+RPQK RPPEIIKLNDAAKLAAQLMSKMTNSEWKET VDNESTAIEPE+RPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSE+TPVL
Subjt:  MDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVL

Query:  NNKDDDDDDDDEESRTSIFDKKRAAKPV-MPPMRGKKKRR
        +NKDDD DD++EESRT+IF+KKRAAKPV MPP +GKKKRR
Subjt:  NNKDDDDDDDDEESRTSIFDKKRAAKPV-MPPMRGKKKRR
A0A5D3BV19 Putative RNA binding protein2.3e-6290.14Show/hide
Query:  SNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTP
        SNM+RPQK RPPEIIKLNDAAKLAAQLMSKMTNSEWKET VDNESTAIEPE+RPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSE+TP
Subjt:  SNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTP

Query:  VLNNKDDDDDDDDEESRTSIFDKKRAAKPV-MPPMRGKKKRR
        VL+NKDDD DD++EESRT+IF+KKRAAKPV MPP +GKKKRR
Subjt:  VLNNKDDDDDDDDEESRTSIFDKKRAAKPV-MPPMRGKKKRR
A0A6J1HHS0 uncharacterized protein LOC1114641897.9e-5579.86Show/hide
Query:  MSSNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSED
        MSSNM+RPQK RPPEIIKLNDAAKLAA+LMSKMTN EWKETA DN+ST +EPE RPPRLGLGAK++  FRNGPSNDPLDRKLYAKLDAGKKQAARKM ED
Subjt:  MSSNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSED

Query:  TPVLNNKDDDDDDDDEESRTSIFDKKRA-AKPVMPPMRGKKKRR
        TPV+NN+DDDD+DD+EES T++FDKKRA  +  MPP+  KKKRR
Subjt:  TPVLNNKDDDDDDDDEESRTSIFDKKRA-AKPVMPPMRGKKKRR
A0A6J1KYE5 uncharacterized protein LOC1114993313.0e-5481.25Show/hide
Query:  MSSNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSED
        MSSN++RPQK RPPEIIKLNDAAKLAAQLMSKMT +EWKETA DNEST  EP  RPPRLGLGAK+T + RNGPSNDPLDRKLYAKLDA KKQAARK+SED
Subjt:  MSSNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSED

Query:  TPVLNNKDDDDDDDDEESRTSIFDKKRAAKPV-MPPMRGKKKRR
        TPVL+N++DDDDDDD+ESRT+IFDKKRAA  V M P+R KKKRR
Subjt:  TPVLNNKDDDDDDDDEESRTSIFDKKRAAKPV-MPPMRGKKKRR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G61370.1 Protein of unknown function (DUF3245)4.3e-1344.35Show/hide
Query:  PEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDD
        P+I K + A KLA + ++ MT    + T  D   TA   E RP RLGLGA+V+R  +  PS+DPLD+KL AK  A K++ AR ++E      N  DD +D
Subjt:  PEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDD

Query:  DDE-ESRTSIFDKKR
        DDE ES++  F KK+
Subjt:  DDE-ESRTSIFDKKR
AT4G07940.1 Protein of unknown function (DUF3245)1.9e-0846.48Show/hide
Query:  RLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDDDDE-ESRTSIFDKKR
        +LGLGA+V+R  +  PS+DPLD+KL AK  AGK++ AR ++E      N  DD++D DE ES++  F  K+
Subjt:  RLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDDDDE-ESRTSIFDKKR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGCAACATGGACAGGCCGCAGAAATTTAGACCTCCCGAAATTATTAAGCTGAATGATGCAGCGAAATTGGCAGCACAGTTGATGAGCAAGATGACTAAT
TCCGAGTGGAAAGAAACTGCAGTTGATAATGAATCAACTGCGATTGAACCCGAGATTCGACCTCCTAGACTTGGACTTGGAGCCAAAGTAACACGCCATTTCAGA
AATGGACCATCTAATGACCCACTTGATAGAAAACTATATGCCAAATTAGATGCTGGGAAAAAACAAGCTGCTAGAAAGATGTCGGAGGATACTCCCGTACTTAAC
AATAAAGATGATGACGACGACGACGATGATGAAGAGAGTAGAACTTCCATATTCGATAAGAAGCGAGCAGCTAAGCCAGTAATGCCTCCTATGCGGGGGAAGAAA
AAACGAAGGTAA
mRNA sequenceShow/hide mRNA sequence
CCTACTTTTCTCAATATTTTCAACTCAATTCTATTTTTGTCATTATTTATTAAAATAACATTATTGAATTGAAGGGTGAAATTACTATTCAAACGTGAGTTTTGA
TCCTCTATTACCCTTCTTTCTCCATCTCCCTCACATACTCGCCTGATCCCTAATCCTCCGCCGGCAGCAGCTCACCGGCGCTACTCTTCTCCGGCAAGTACGTAC
TTGTCGAACCAAATCCTGTGACGACGATAGACCGACCGGGAAGGTGGTCGACACCCACGAACACCTCTCAGCAACCCTCTCGCTCCCGGCGCGACATACCAGCGT
ATCGCAGTCTTGAAGTTGCAGTAGCAAGCGCAATGAGCAGCAACATGGACAGGCCGCAGAAATTTAGACCTCCCGAAATTATTAAGCTGAATGATGCAGCGAAAT
TGGCAGCACAGTTGATGAGCAAGATGACTAATTCCGAGTGGAAAGAAACTGCAGTTGATAATGAATCAACTGCGATTGAACCCGAGATTCGACCTCCTAGACTTG
GACTTGGAGCCAAAGTAACACGCCATTTCAGAAATGGACCATCTAATGACCCACTTGATAGAAAACTATATGCCAAATTAGATGCTGGGAAAAAACAAGCTGCTA
GAAAGATGTCGGAGGATACTCCCGTACTTAACAATAAAGATGATGACGACGACGACGATGATGAAGAGAGTAGAACTTCCATATTCGATAAGAAGCGAGCAGCTA
AGCCAGTAATGCCTCCTATGCGGGGGAAGAAAAAACGAAGGTAACTACTTTTGTAGGTAGGGAATATTGATTATCGAACAGGTTGTCTTAACAGTAGAAAAATGG
TGAACATCTTATGAGGGTCTCGAACCGAAGGTATATATAATTAGTTCATAAGTAAGTACCAAAGTAATCGAAAATATCGGGAAGGGATGATATCATCATCAATAT
TTTTGTAAAATACAACCTTGAATATTTTGTTAGACGTTGACATTTCCTAGTTACAGAGGTCGAATTTTTTTAATATCAAATTATGATGTTGCAACTTCCAAGTTT
ATAAAAAATAGTTATCCTACAATTTTGGTTTAAAAGGTATTTTGCCCA
Protein sequenceShow/hide protein sequence
MSSNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLN
NKDDDDDDDDEESRTSIFDKKRAAKPVMPPMRGKKKRR