CuGenDBv2

Gene ID	Lsi03G003780
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Sister chromatid cohesion 1 protein 2
Genome location	chr03:4427605..4428567
RNA-Seq Expression	Lsi03G003780
Synteny	Lsi03G003780
Gene Ontology terms	GO:0007064 - mitotic sister chromatid cohesion (biological process) GO:0007130 - synaptonemal complex assembly (biological process) GO:1990414 - replication-born double-strand break repair via sister chromatid exchange (biological process) GO:0000795 - synaptonemal complex (cellular component) GO:0034990 - nuclear mitotic cohesin complex (cellular component) GO:0034991 - nuclear meiotic cohesin complex (cellular component) GO:0003682 - chromatin binding (molecular function) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR006910 - Rad21/Rec8-like protein, N-terminal IPR039781 - Rad21/Rec8-like protein

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008441365.1 PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Cucumis melo]

5.0e-13

95.12

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MFHSHCLL RKGPLGAIWVAAYCFKKLKKSLVMETDIP SV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

XP_008441366.1 PREDICTED: sister chromatid cohesion 1 protein 2 isoform X2 [Cucumis melo]

5.0e-13

95.12

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MFHSHCLL RKGPLGAIWVAAYCFKKLKKSLVMETDIP SV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

XP_011656377.1 sister chromatid cohesion 1 protein 2 isoform X1 [Cucumis sativus]

1.1e-12

92.68

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MFHSHCLL RKGPLGAIW+AAYCFKKLKKSLVMETDIP SV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

XP_022134001.1 sister chromatid cohesion 1 protein 2 isoform X1 [Momordica charantia]

1.3e-13

97.56

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MFHSHCLLSRKGPLGAIWVAAYCFKKLKKS VMETDIPSSV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

XP_038884214.1 LOW QUALITY PROTEIN: sister chromatid cohesion 1 protein 2 [Benincasa hispida]

1.0e-13

97.56

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MFHSHCLL RKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7K5 Uncharacterized protein

5.4e-13

92.68

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MFHSHCLL RKGPLGAIW+AAYCFKKLKKSLVMETDIP SV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

A0A1S3B388 sister chromatid cohesion 1 protein 2 isoform X1

2.4e-13

95.12

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MFHSHCLL RKGPLGAIWVAAYCFKKLKKSLVMETDIP SV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

A0A1S3B3X4 sister chromatid cohesion 1 protein 2 isoform X2

2.4e-13

95.12

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MFHSHCLL RKGPLGAIWVAAYCFKKLKKSLVMETDIP SV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

A0A6J1BYC1 sister chromatid cohesion 1 protein 2 isoform X1

6.4e-14

97.56

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MFHSHCLLSRKGPLGAIWVAAYCFKKLKKS VMETDIPSSV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

A0A6J1JKF4 sister chromatid cohesion 1 protein 2 isoform X2

1.0e-11

90.24

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MFHSHC LSRKGP GAIWVAAY FKKLKKSLV+ETDIPSSV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

SwissProt top hits

e value

%identity

Alignment

Q19325 Sister chromatid cohesion protein 1

6.8e-05

43.9

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MF++  +L++KGPL  +W+AA+  KKL K+ + ETD+P ++
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

Q6TEL1 Double-strand-break repair protein rad21 homolog A

1.5e-04

51.22

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MF++H +LS++GPL  IW+AA+  KKL K+ V E ++ SSV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

Q8W1Y0 Sister chromatid cohesion 1 protein 4

1.4e-05

53.66

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MF+S  +L++KGPLG IW+AA+  +KL+K+ V +TDI  SV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

Q9FQ19 Sister chromatid cohesion 1 protein 3

6.2e-06

53.66

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MF+SH LL+RKGPLG +W AA+  ++LKKS     +IP +V
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

Q9FQ20 Sister chromatid cohesion 1 protein 2

4.4e-12

82.93

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MF+SHCL+SRKGPLGAIWVAAY FKKLKKS V  T IPSSV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

Arabidopsis top hits

e value

%identity

Alignment

AT3G59550.1 Rad21/Rec8-like family protein

4.4e-07

53.66

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MF+SH LL+RKGPLG +W AA+  ++LKKS     +IP +V
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

AT5G16270.1 sister chromatid cohesion 1 protein 4

9.7e-07

53.66

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MF+S  +L++KGPLG IW+AA+  +KL+K+ V +TDI  SV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

AT5G40840.1 Rad21/Rec8-like family protein

3.1e-13

82.93

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MF+SHCL+SRKGPLGAIWVAAY FKKLKKS V  T IPSSV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

AT5G40840.2 Rad21/Rec8-like family protein

3.1e-13

82.93

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Query:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV
        MF+SHCL+SRKGPLGAIWVAAY FKKLKKS V  T IPSSV
Subjt:  MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSV

Sequences

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CDS sequence

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ATGTTTCACTCACACTGCCTTCTTTCGAGGAAAGGCCCTTTAGGCGCCATTTGGGTCGCTGCTTACTGCTTCAAAAAGCTCAAGAAATCTCTGGTTATGGAAACTGATAT
CCCCTCCTCTGTTGTTTGTTTGTTTGCTTCACTGGGTTTCCTGGTTTCTAGAAAAACCTCAAATGTAAATACAAGACCTTTTGGACCTTTCTCACAAGTCAGAGTCTATG
TTGTCTGGTTTTGGGAATAA

mRNA sequence

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AACACTTGCCCCAATTGAATTCCGCCTCTCAATTTATCAATTTTCCGTTATTTCCCCAAAACTTTTCAGAAAATTCCTTTCCAGACACATTTTCCCATTTCTGATTTTTA
CCTTGCAAGCTTCTTATTATTTTATAATTACCATAGTTTTGTTCGGGTTCGAGGCTTCCCCTGCACTCTTCTTCTTCTTCTTCCCTTCTTCTTCCCTTCTTCTTCTTCTT
CCATTTTGCATGAAAGTTCTGCACTCTCTCTGCATTTGAATTTCAGAGCCGAAAGCTTCAATGCCCTCTGACTTGTTGGGGCGTAAAATAGAAGACATTGAGCTATGTTT
CACTCACACTGCCTTCTTTCGAGGAAAGGCCCTTTAGGCGCCATTTGGGTCGCTGCTTACTGCTTCAAAAAGCTCAAGAAATCTCTGGTTATGGAAACTGATATCCCCTC
CTCTGTTGTTTGTTTGTTTGCTTCACTGGGTTTCCTGGTTTCTAGAAAAACCTCAAATGTAAATACAAGACCTTTTGGACCTTTCTCACAAGTCAGAGTCTATGTTGTCT
GGTTTTGGGAATAA

Protein sequence

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MFHSHCLLSRKGPLGAIWVAAYCFKKLKKSLVMETDIPSSVVCLFASLGFLVSRKTSNVNTRPFGPFSQVRVYVVWFWE

Lsi03G003780 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome