; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G003960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G003960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiongeneral transcription factor 3C polypeptide 6-like
Genome locationchr03:4555945..4559696
RNA-Seq ExpressionLsi03G003960
SyntenyLsi03G003960
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0000127 - transcription factor TFIIIC complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR019481 - Transcription factor TFIIIC, triple barrel domain
IPR042771 - TFIIIC subunit GTF3C6-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578370.1 hypothetical protein SDJN03_22818, partial [Cucurbita argyrosperma subsp. sororia]1.4e-4788.03Show/hide
Query:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP
        MEKA IDSASDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTM+P+LTICDKIKMIGEYEETIGTCL FAEEEV +VEEEA PS+TNRRS +AVEP QA 
Subjt:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP

Query:  RKELKPVASVHKILKFK
        RK+LKPVASVHKILKFK
Subjt:  RKELKPVASVHKILKFK
XP_022939121.1 uncharacterized protein LOC111445121, partial [Cucurbita moschata]5.1e-5090.6Show/hide
Query:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP
        MEKA IDSASDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEV +VEEEA PSETNRRS +AVEP QAP
Subjt:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP

Query:  RKELKPVASVHKILKFK
        R++LKPVASVHKILKFK
Subjt:  RKELKPVASVHKILKFK
XP_022993830.1 uncharacterized protein LOC111489725 [Cucurbita maxima]8.7e-5090.6Show/hide
Query:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP
        MEKA IDSASDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEV +VEEEA PS+TNRRS +AVEP QAP
Subjt:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP

Query:  RKELKPVASVHKILKFK
        RK+LKPVASVHKILKFK
Subjt:  RKELKPVASVHKILKFK
XP_023550663.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo]1.3e-5092.31Show/hide
Query:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP
        MEKA IDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEV +VEEEA PSETNRRS +AVEP QAP
Subjt:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP

Query:  RKELKPVASVHKILKFK
        RK+LKPVASVHKILKFK
Subjt:  RKELKPVASVHKILKFK
XP_038885696.1 uncharacterized protein LOC120075999 [Benincasa hispida]2.1e-5194.02Show/hide
Query:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP
        MEKATIDSA D EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEA PSE+NRRS EA EPKQAP
Subjt:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP

Query:  RKELKPVASVHKILKFK
        RKELKPVASVHKILKFK
Subjt:  RKELKPVASVHKILKFK
TrEMBL top hitse value%identityAlignment
A0A0A0LML8 TFIIIC_sub6 domain-containing protein7.4e-4789.74Show/hide
Query:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP
        MEKATIDSASD EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYEETIGTCLTFAEEEVPVVEEEA PSET R S E VEP+QA 
Subjt:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP

Query:  RKELKPVASVHKILKFK
        +KELK VA VHKILKFK
Subjt:  RKELKPVASVHKILKFK
A0A1S4DTV8 general transcription factor 3C polypeptide 6-like1.5e-4789.74Show/hide
Query:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP
        MEKATIDSAS+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYEETIGTCLTFAEEEVPVVEEEA PSETN  S EA EPKQA 
Subjt:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP

Query:  RKELKPVASVHKILKFK
        RKELK  A VHKILKFK
Subjt:  RKELKPVASVHKILKFK
A0A6J1BZW5 uncharacterized protein LOC1110062258.7e-4887.39Show/hide
Query:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVV--EEEAGPSETNRRSGEAVEPKQ
        MEK TID ASDGEE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKM+GEYEETIGTCLTFAEEEV VV  EEEAGPSET  R+ EAV P +
Subjt:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVV--EEEAGPSETNRRSGEAVEPKQ

Query:  APRKELKPVASVHKILKFK
        APRKELKP+ASVHKILKFK
Subjt:  APRKELKPVASVHKILKFK
A0A6J1FF13 uncharacterized protein LOC1114451212.5e-5090.6Show/hide
Query:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP
        MEKA IDSASDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEV +VEEEA PSETNRRS +AVEP QAP
Subjt:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP

Query:  RKELKPVASVHKILKFK
        R++LKPVASVHKILKFK
Subjt:  RKELKPVASVHKILKFK
A0A6J1JTZ1 uncharacterized protein LOC1114897254.2e-5090.6Show/hide
Query:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP
        MEKA IDSASDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEV +VEEEA PS+TNRRS +AVEP QAP
Subjt:  MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAP

Query:  RKELKPVASVHKILKFK
        RK+LKPVASVHKILKFK
Subjt:  RKELKPVASVHKILKFK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G80745.1 Transcription factor TFIIIC, tau55-related protein5.5e-1847.17Show/hide
Query:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAPRKELKPVASVH
        E+E+V++DL DVS  +DIP +APY LSGLDT+NPVLTI  K+K++GEY  TIGTCL F+++         G ++T +            +K ++PVA +H
Subjt:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAPRKELKPVASVH

Query:  KILKFK
        KILKF+
Subjt:  KILKFK
AT3G15420.1 Transcription factor TFIIIC, tau55-related protein1.7e-1952.34Show/hide
Query:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAPRKE-LKPVASV
        EEE+V++DL +VS  ++IP +APY LSGLDT+NPVLTI  KIK++GEY ETIGTCL F+E      +EE   SE            Q P K+ ++PVA +
Subjt:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAPRKE-LKPVASV

Query:  HKILKFK
        HKILKF+
Subjt:  HKILKFK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAGCTACAATTGATTCTGCCTCTGATGGCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCACTGCTTGACATTCCACCCAATGCTCCATATGTTCT
ATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAAATTAAGATGATTGGAGAATATGAAGAAACCATAGGTACATGTCTTACCTTTGCGGAAGAGGAAG
TCCCTGTGGTTGAAGAAGAAGCTGGGCCATCTGAAACAAATCGTCGCTCGGGAGAAGCAGTTGAACCAAAACAAGCTCCTAGAAAGGAGTTGAAGCCCGTTGCTTCTGTA
CATAAGATCCTTAAATTTAAACAGCCTCTGCCTCAGCTCATCAAGCATCAGTTCACTCGCCTCGGCTGTGACAATGCCTGGATTAACAGCACCCTCAGATTACTCTCAAG
AGCCACTTCGTCACCCATGTCTCCGAATCAACGCCAAGGCAACCCTTTCTTATTCAAAATTTGCCTTCTACTTGTTGAAGAAGCAGTGGTTTCAGCTTTGTTTGTTATGA
ATATTTTTGTGCTGATTTTCTCTTCCTCAGGAGCCCTTCAATGCAGAGCCACCCCGCTCAGCCCTGATTTCATCTTATATCACTCCTGTACAATTCTTTTACAAGAGAAA
TCACGGCCCTATTCCATTAGTGGATGA
mRNA sequenceShow/hide mRNA sequence
CGGGAGCAGTGAGTGAGTGAGTAAGGCCTCCTCCAAACCCCTTTCAACCTTTCTCTCTCTACCCATACTAAACCGTACGAGCAAAATAGACGCCCCCCCGCCTTCCTCCG
TCCGACCGATCATCCGTCGCAGTCGCCACCGGTAAGGCCCTCCATTCCGCAATCTCTCTCTCTCTCTCTCTCTCCCATTCTGTTTGCAGCACCGCTTAGCAACCCTCCGC
CTCCGATCGTCCATTGTCGCCACGCTACCGCCGGAGCTTCGACTATTTCAAATTTTTATTTGATATTGCATAGAGGTATCTCTAAGGAACATGGAGAAAGCTACAATTGA
TTCTGCCTCTGATGGCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCACTGCTTGACATTCCACCCAATGCTCCATATGTTCTATCTGGTTTGGACACCATGA
ATCCAGTGTTGACTATCTGCGACAAAATTAAGATGATTGGAGAATATGAAGAAACCATAGGTACATGTCTTACCTTTGCGGAAGAGGAAGTCCCTGTGGTTGAAGAAGAA
GCTGGGCCATCTGAAACAAATCGTCGCTCGGGAGAAGCAGTTGAACCAAAACAAGCTCCTAGAAAGGAGTTGAAGCCCGTTGCTTCTGTACATAAGATCCTTAAATTTAA
ACAGCCTCTGCCTCAGCTCATCAAGCATCAGTTCACTCGCCTCGGCTGTGACAATGCCTGGATTAACAGCACCCTCAGATTACTCTCAAGAGCCACTTCGTCACCCATGT
CTCCGAATCAACGCCAAGGCAACCCTTTCTTATTCAAAATTTGCCTTCTACTTGTTGAAGAAGCAGTGGTTTCAGCTTTGTTTGTTATGAATATTTTTGTGCTGATTTTC
TCTTCCTCAGGAGCCCTTCAATGCAGAGCCACCCCGCTCAGCCCTGATTTCATCTTATATCACTCCTGTACAATTCTTTTACAAGAGAAATCACGGCCCTATTCCATTAG
TGGATGA
Protein sequenceShow/hide protein sequence
MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAPRKELKPVASV
HKILKFKQPLPQLIKHQFTRLGCDNAWINSTLRLLSRATSSPMSPNQRQGNPFLFKICLLLVEEAVVSALFVMNIFVLIFSSSGALQCRATPLSPDFILYHSCTILLQEK
SRPYSISG