; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G004340 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G004340
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionChloroplastic group IIA intron splicing facilitator CRS1
Genome locationchr03:4916008..4918241
RNA-Seq ExpressionLsi03G004340
SyntenyLsi03G004340
Gene Ontology termsGO:0000373 - Group II intron splicing (biological process)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001890 - RNA-binding, CRM domain
IPR035920 - YhbY-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK06679.1 chloroplastic group IIA intron splicing facilitator CRS1 [Cucumis melo var. makuwa]4.7e-13384.9Show/hide
Query:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVK
        LTGGTLLLRNKFLIILYRGNDFLPVGVA+SIIQRE+ELQRWQLHEENSRLKAS FFCF+TGNMEER KAGTLSDFKD+TVE+EDL+T STESKLQA+A +
Subjt:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVK

Query:  GKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAF
        GKIIRELRMQERRL ILNFKVEKSTKELTKLNASW  VEP+ DQELITNEERICFRKMGLKMDSCLTLGRRG+FDGVIEGLHQHWKHREVVKVITMQRA 
Subjt:  GKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAF

Query:  NQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG------------VSGTSVPCSVYEEHSRAPCE
        NQV YTAK LEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG            +S   +   V+EE  R+PCE
Subjt:  NQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG------------VSGTSVPCSVYEEHSRAPCE

XP_008441260.1 PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Cucumis melo]3.9e-13292.11Show/hide
Query:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVK
        LTGGTLLLRNKFLIILYRGNDFLPVGVA+SIIQRE+ELQRWQLHEENSRLKAS FFCF+TGNMEER KAGTLSDFKD+TVE+EDL+T STESKLQA+A +
Subjt:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVK

Query:  GKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAF
        GKIIRELRMQERRL ILNFKVEKSTKELTKLNASW  VEP+ DQELITNEERICFRKMGLKMDSCLTLGRRG+FDGVIEGLHQHWKHREVVKVITMQRA 
Subjt:  GKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAF

Query:  NQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG
        NQV YTAK LEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG
Subjt:  NQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG

XP_038884366.1 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X1 [Benincasa hispida]5.9e-13694.38Show/hide
Query:  SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAV
        SLTGGTLLLRNKFLIILYRG DFLPVGVANSIIQREMELQRWQLHEENSRLKAS  FCF+TGNMEERAKAGTLSDFKDITVE++DL+TGSTESKLQADA 
Subjt:  SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAV

Query:  KGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRA
        KGKIIRELRMQERRLS LNFKVEKS KELTKLNASWRHVEP+ DQE ITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKV+TMQRA
Subjt:  KGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRA

Query:  FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG
        FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSV KNLLTKRKALSRSLEMQRIG
Subjt:  FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG

XP_038884367.1 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X2 [Benincasa hispida]2.2e-13886.96Show/hide
Query:  SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAV
        SLTGGTLLLRNKFLIILYRG DFLPVGVANSIIQREMELQRWQLHEENSRLKAS  FCF+TGNMEERAKAGTLSDFKDITVE++DL+TGSTESKLQADA 
Subjt:  SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAV

Query:  KGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRA
        KGKIIRELRMQERRLS LNFKVEKS KELTKLNASWRHVEP+ DQE ITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKV+TMQRA
Subjt:  KGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRA

Query:  FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG------------VSGTSVPCSVYEEHSRAPCE
        FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSV KNLLTKRKALSRSLEMQRIG            +S   +  +  E+H RAPCE
Subjt:  FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG------------VSGTSVPCSVYEEHSRAPCE

XP_038884368.1 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Benincasa hispida]5.9e-13694.38Show/hide
Query:  SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAV
        SLTGGTLLLRNKFLIILYRG DFLPVGVANSIIQREMELQRWQLHEENSRLKAS  FCF+TGNMEERAKAGTLSDFKDITVE++DL+TGSTESKLQADA 
Subjt:  SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAV

Query:  KGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRA
        KGKIIRELRMQERRLS LNFKVEKS KELTKLNASWRHVEP+ DQE ITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKV+TMQRA
Subjt:  KGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRA

Query:  FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG
        FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSV KNLLTKRKALSRSLEMQRIG
Subjt:  FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG

TrEMBL top hitse value%identityAlignment
A0A0A0LSY1 Uncharacterized protein4.3e-13291.76Show/hide
Query:  SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAV
        +LTGGTLLLRNKF+IILYRGNDFLPVGVA+SIIQRE+ELQRWQLHEENSRLKAS FFCF+T NMEER KAGTLSDFKDITV +EDL+TGSTES+LQA+A 
Subjt:  SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAV

Query:  KGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRA
        KGKIIR LRMQERRL ILNFKVEKSTKELTKLNASWR VEP+ DQELITNEERICFRKMGLKMDSCLTLGRRG+FDGVIEGLHQHWKHREVVKVITMQRA
Subjt:  KGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRA

Query:  FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG
        FNQV YTAK LEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG
Subjt:  FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG

A0A1S3B2K3 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic1.9e-13292.11Show/hide
Query:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVK
        LTGGTLLLRNKFLIILYRGNDFLPVGVA+SIIQRE+ELQRWQLHEENSRLKAS FFCF+TGNMEER KAGTLSDFKD+TVE+EDL+T STESKLQA+A +
Subjt:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVK

Query:  GKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAF
        GKIIRELRMQERRL ILNFKVEKSTKELTKLNASW  VEP+ DQELITNEERICFRKMGLKMDSCLTLGRRG+FDGVIEGLHQHWKHREVVKVITMQRA 
Subjt:  GKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAF

Query:  NQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG
        NQV YTAK LEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG
Subjt:  NQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG

A0A5D3C8J4 Chloroplastic group IIA intron splicing facilitator CRS12.3e-13384.9Show/hide
Query:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVK
        LTGGTLLLRNKFLIILYRGNDFLPVGVA+SIIQRE+ELQRWQLHEENSRLKAS FFCF+TGNMEER KAGTLSDFKD+TVE+EDL+T STESKLQA+A +
Subjt:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVK

Query:  GKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAF
        GKIIRELRMQERRL ILNFKVEKSTKELTKLNASW  VEP+ DQELITNEERICFRKMGLKMDSCLTLGRRG+FDGVIEGLHQHWKHREVVKVITMQRA 
Subjt:  GKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAF

Query:  NQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG------------VSGTSVPCSVYEEHSRAPCE
        NQV YTAK LEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG            +S   +   V+EE  R+PCE
Subjt:  NQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG------------VSGTSVPCSVYEEHSRAPCE

A0A6J1FHM9 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic3.7e-12889.89Show/hide
Query:  SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAV
        SLTGGTLLLRNKF IILYRG DFLPVGVANSIIQRE ELQRWQLHEENSRLKAS  FCF+TGN+EERAKAGTLSDFKDIT+E+EDLTTGSTESKLQADA 
Subjt:  SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAV

Query:  KGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRA
        KGKIIREL+ QERRLSIL+FKVEKSTKELTKLNAS RHVEP+ DQELITNEERICFRKMGLKM SCLTLGRRGIFDGVIEGLHQHWKHREVVKVI+MQRA
Subjt:  KGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRA

Query:  FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG
        FNQV+ TAKSLEAESGGIL+SVDKL EGYAIIIFRGKNY+RPL SVSKNLLTK KAL RSLE QRIG
Subjt:  FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG

A0A6J1JY40 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X18.3e-12889.51Show/hide
Query:  SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAV
        SLTGGTLLLRNKF IILYRG DFLPVG+A+SIIQRE ELQRWQLHEENSRLKA   FCF+TGN+EERAKAGTLSDFKDIT+E+EDLTTGSTESKLQADA 
Subjt:  SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAV

Query:  KGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRA
        KGKIIREL+ QERRLSIL+FKVEKSTKELTKLNAS RHVEP+ DQELITNEERICFRKMGLKM SCLTLGRRGIFDGVIEGLHQHWKHREVVKVI+MQRA
Subjt:  KGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRA

Query:  FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG
        FNQV+ TAKSLEAESGGIL+SVDKLKEGYAIIIFRGKNYKRPL SVSKNLLTK KAL RSLE+QRIG
Subjt:  FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG

SwissProt top hitse value%identityAlignment
F4J2U9 CRM-domain containing factor CFM3A, chloroplastic/mitochondrial1.1e-5244.4Show/hide
Query:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLK-ASAFFCFNTGNMEERAKAGTLSDFKDITVEFE---DLTTGSTESKLQA
        LTGG +L RNK  ++ YRG +FL   VA++++++E  ++  Q  EE +RL+ +SA    +T    +   AGTL +  D T ++    D    S E K + 
Subjt:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLK-ASAFFCFNTGNMEERAKAGTLSDFKDITVEFE---DLTTGSTESKLQA

Query:  DAVKGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITM
        + ++ + +  +R  ER+L+    K+ K+ + L K+    +  E  ED E IT+EER  FRK+GLKM + L LGRRG+FDG +E +H HWK+RE+VK+I  
Subjt:  DAVKGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITM

Query:  QRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQR
         + F+ V   A +LEAESGGILVS+DK+ +GYAII++RG++YKRP     KNLLTKRKAL+RS+E+QR
Subjt:  QRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQR

Q2R1U8 CRM-domain containing factor CFM3, chloroplastic/mitochondrial4.6e-5142.8Show/hide
Query:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVK
        LTGG +L RN   ++ YRG DFL   +A  +++RE   +  Q  EE +RL A++ F   T    E   AGTL +  +   ++ +    + E+K+      
Subjt:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVK

Query:  GKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAF
         +    +R  E +L +   K+EK+ + L K+  + +  E  +  E IT+EER  FRK+GL+M + L LGRRG+FDG IE +H HWK+RE+VK++   ++F
Subjt:  GKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAF

Query:  NQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQR
          V   A SLEAESGGILVSVDK+ +GYAI++FRGK+Y RP     +NLL+KRKAL+RS+E+QR
Subjt:  NQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQR

Q6YYA3 Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic1.1e-6549.25Show/hide
Query:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVK
        LTGGT++LRNK  II+YRG DFLP GVA S+I+RE ++   Q  EE +RLK +       G   ER+  GT  +++D        TT     ++Q +A K
Subjt:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVK

Query:  GKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAF
         ++ +EL+ QE RLS+L  K+E+S + L KL++SW   + + D+EL+T EER  FRK+GLKMD  + LGRRG+F+GVIE +HQHWKH+EVVKVIT Q   
Subjt:  GKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAF

Query:  NQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG
        +Q+ YT+  LE E+GG L+++++    +AII++RGKNY+RP  S   NLLTKR+AL RS+E+QR G
Subjt:  NQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG

Q9FYT6 Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic2.7e-6750Show/hide
Query:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVK
        LTGGT++LRNK  IILYRG DFLP GVA ++IQRE ++   Q+ EE +RLKA        G + E +  GT  +++    +F    T ++ + ++ +A K
Subjt:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVK

Query:  GKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAF
         ++ +EL+  E +LS+LN K+E+S + L KL++SW   E + D+E +T EE+I FR++G KMD  + LGRRGIFDGVIE +HQHWKH+EVVKVIT Q   
Subjt:  GKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAF

Query:  NQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG
         Q++Y A  LE E+GGIL++V+KL   +AII++RGKNY+RP  S   NLLTKR+AL RS+E+QR G
Subjt:  NQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIG

Q9LF10 Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic1.4e-7153.16Show/hide
Query:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFF--CFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADA
        LTGG L+LRNK+LI+LYRG DFL   VA+ +  RE  L R+Q  EE  R           N   ++E  K+GTL +F+++  +F ++        L+ +A
Subjt:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFF--CFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADA

Query:  VKGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQR
         K ++ +EL+ QE +LSIL  K+EKS  EL KLN+ W+  E ++D E++TNEER C R++GLKM+S L LGRRG+F GV+EGLHQHWKHREV KVITMQ+
Subjt:  VKGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQR

Query:  AFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHS-VSKNLLTKRKALSRSLEMQRIG
         F++V+YTAK+LE ES G+L+S++KLKEG+AI+I+RGKNYKRP    +++NLLTKRKAL RS+ MQR+G
Subjt:  AFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHS-VSKNLLTKRKALSRSLEMQRIG

Arabidopsis top hitse value%identityAlignment
AT3G18390.1 CRS1 / YhbY (CRM) domain-containing protein4.3e-5242.26Show/hide
Query:  SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAV
        +LTGG LLLRNK+ I++YRG DFLP  VA ++ +R+ EL + ++ +   R++            +  A+AGTL++F +    +    T     K+  +A 
Subjt:  SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAV

Query:  KGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRA
        +    R ++  + +L++   K +++ K L+K+ AS     P+ DQE+I+ EER  FRK+GLKM + L +G RG+FDGVIE +H HWKHRE+VK+I+ Q+ 
Subjt:  KGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRA

Query:  FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQR
           V  TA+ LE ESGG+LV+++K+ +G+A+I +RGKNY+RP+    +NLLTK KAL RS+ MQR
Subjt:  FNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQR

AT3G23070.1 CRM family member 3A7.9e-5444.4Show/hide
Query:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLK-ASAFFCFNTGNMEERAKAGTLSDFKDITVEFE---DLTTGSTESKLQA
        LTGG +L RNK  ++ YRG +FL   VA++++++E  ++  Q  EE +RL+ +SA    +T    +   AGTL +  D T ++    D    S E K + 
Subjt:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLK-ASAFFCFNTGNMEERAKAGTLSDFKDITVEFE---DLTTGSTESKLQA

Query:  DAVKGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITM
        + ++ + +  +R  ER+L+    K+ K+ + L K+    +  E  ED E IT+EER  FRK+GLKM + L LGRRG+FDG +E +H HWK+RE+VK+I  
Subjt:  DAVKGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITM

Query:  QRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQR
         + F+ V   A +LEAESGGILVS+DK+ +GYAII++RG++YKRP     KNLLTKRKAL+RS+E+QR
Subjt:  QRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQR

AT4G14510.1 CRM family member 3B1.1e-5039.59Show/hide
Query:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCF-----------NTGNMEERAK-----------------AGTL
        LTGG LL RNK  ++ YRG  FL + V  +++++EM ++  Q  EE +RL+AS+                  + EE+A+                 AGTL
Subjt:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCF-----------NTGNMEERAK-----------------AGTL

Query:  SDFKDITVEF-EDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRR
         +  D T ++ ++L       +++ +  K +  + +R  ER+L+    K+ K+ + L K+  S +  E   D E IT EER  F+K+GLKM + L LGRR
Subjt:  SDFKDITVEF-EDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRR

Query:  GIFDGVIEGLHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQR
        G+FDG +E +H HWK+RE++K++   +        A +LEAESGGILVSVDK+ +GYA+I++RGK+YKRP     KNLLTKRKAL+RSLE+Q+
Subjt:  GIFDGVIEGLHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQR

AT4G29750.1 CRS1 / YhbY (CRM) domain-containing protein6.4e-4841.57Show/hide
Query:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMEL-QRWQLHEENSRLKAS--AFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQAD
        LT G L+ RNK  I+ YRGNDF+P  VA ++ +R+ E+ +  Q  E+ +R  AS  A       + + +  AGTL++    +  +    +     +L+ +
Subjt:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMEL-QRWQLHEENSRLKAS--AFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQAD

Query:  AVKGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQ
        +   K    +R  E RL     K+ ++ ++L K+       E   D E+IT EER+ +RK+GL MD  L LGRR ++DG IE +H HWKHRE+VKVI   
Subjt:  AVKGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQ

Query:  RAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQR
        ++  QV + A SLEAESGG+LVSVDK  +GYAII++RGKNY+ P      NLLT++KA +RS+E+QR
Subjt:  RAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQR

AT5G16180.1 ortholog of maize chloroplast splicing factor CRS19.9e-7353.16Show/hide
Query:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFF--CFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADA
        LTGG L+LRNK+LI+LYRG DFL   VA+ +  RE  L R+Q  EE  R           N   ++E  K+GTL +F+++  +F ++        L+ +A
Subjt:  LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFF--CFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADA

Query:  VKGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQR
         K ++ +EL+ QE +LSIL  K+EKS  EL KLN+ W+  E ++D E++TNEER C R++GLKM+S L LGRRG+F GV+EGLHQHWKHREV KVITMQ+
Subjt:  VKGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQR

Query:  AFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHS-VSKNLLTKRKALSRSLEMQRIG
         F++V+YTAK+LE ES G+L+S++KLKEG+AI+I+RGKNYKRP    +++NLLTKRKAL RS+ MQR+G
Subjt:  AFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHS-VSKNLLTKRKALSRSLEMQRIG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTATGAGTCTCACAGGAGGAACATTGCTGCTGCGCAACAAATTTCTCATTATCCTTTACCGAGGCAATGACTTCCTACCTGTTGGAGTTGCCAATTCAATAATTCA
AAGAGAAATGGAGCTCCAAAGATGGCAACTTCACGAGGAAAATTCACGGCTGAAAGCCAGTGCATTTTTCTGTTTTAACACTGGGAACATGGAAGAGAGAGCCAAGGCTG
GAACTCTATCAGATTTTAAGGATATCACAGTGGAGTTTGAAGATTTGACAACTGGAAGCACAGAATCAAAACTTCAAGCAGATGCTGTAAAGGGAAAAATCATTAGGGAG
CTGAGGATGCAAGAGCGAAGACTTAGCATTCTTAACTTTAAGGTAGAGAAGTCAACAAAGGAGTTGACAAAGTTGAATGCATCATGGAGGCACGTTGAGCCAAATGAAGA
CCAGGAACTGATTACAAATGAGGAGAGAATATGTTTTAGGAAGATGGGTTTGAAGATGGATAGCTGCTTAACACTCGGTAGGCGTGGCATCTTTGATGGTGTTATTGAAG
GCTTGCATCAACACTGGAAACACAGAGAGGTAGTAAAGGTGATTACCATGCAGAGAGCTTTTAATCAGGTTATTTATACTGCAAAATCGCTTGAAGCAGAAAGTGGTGGG
ATTTTAGTATCCGTGGACAAACTAAAAGAAGGCTATGCCATAATTATTTTCCGTGGAAAGAACTATAAACGACCTCTACATTCAGTGTCCAAGAATCTCTTGACTAAAAG
AAAAGCATTAAGTAGGTCCTTGGAGATGCAGAGAATTGGAGTAAGCGGAACTTCTGTTCCTTGTTCTGTCTATGAAGAACACAGCAGAGCTCCATGTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCGTATGAGTCTCACAGGAGGAACATTGCTGCTGCGCAACAAATTTCTCATTATCCTTTACCGAGGCAATGACTTCCTACCTGTTGGAGTTGCCAATTCAATAATTCA
AAGAGAAATGGAGCTCCAAAGATGGCAACTTCACGAGGAAAATTCACGGCTGAAAGCCAGTGCATTTTTCTGTTTTAACACTGGGAACATGGAAGAGAGAGCCAAGGCTG
GAACTCTATCAGATTTTAAGGATATCACAGTGGAGTTTGAAGATTTGACAACTGGAAGCACAGAATCAAAACTTCAAGCAGATGCTGTAAAGGGAAAAATCATTAGGGAG
CTGAGGATGCAAGAGCGAAGACTTAGCATTCTTAACTTTAAGGTAGAGAAGTCAACAAAGGAGTTGACAAAGTTGAATGCATCATGGAGGCACGTTGAGCCAAATGAAGA
CCAGGAACTGATTACAAATGAGGAGAGAATATGTTTTAGGAAGATGGGTTTGAAGATGGATAGCTGCTTAACACTCGGTAGGCGTGGCATCTTTGATGGTGTTATTGAAG
GCTTGCATCAACACTGGAAACACAGAGAGGTAGTAAAGGTGATTACCATGCAGAGAGCTTTTAATCAGGTTATTTATACTGCAAAATCGCTTGAAGCAGAAAGTGGTGGG
ATTTTAGTATCCGTGGACAAACTAAAAGAAGGCTATGCCATAATTATTTTCCGTGGAAAGAACTATAAACGACCTCTACATTCAGTGTCCAAGAATCTCTTGACTAAAAG
AAAAGCATTAAGTAGGTCCTTGGAGATGCAGAGAATTGGAGTAAGCGGAACTTCTGTTCCTTGTTCTGTCTATGAAGAACACAGCAGAGCTCCATGTGAATAAAGTTTGT
TAGGCAGAGGCCCCATATTCAATAATGGATGCTTAAAAACTGTGAAGACAAGAAAGAAGCTAAGATGGAGATGAAGAAATTCTTTACAAGTTGTGGAGCATTAGTGGATC
TGTCTACTTTGGTTCTGGAATGGATACTGTAAGTGAAAAGATAGAGAGAAAATTTTCTCTTCCATTTATTGACTTGACGCAAAATCGTATTAGAGCTAATTTTCGTTTAA
CCAACGTTCAACAATCTCATTCTTTTATATCTATAGAACATATACATAAATCAGTGCTCTCTAAATCTAATAAAAATGTTTCAACTC
Protein sequenceShow/hide protein sequence
MRMSLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRE
LRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGG
ILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIGVSGTSVPCSVYEEHSRAPCE