; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G004350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G004350
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionchloroplastic group IIA intron splicing facilitator CRS1, chloroplastic
Genome locationchr03:4918667..4920143
RNA-Seq ExpressionLsi03G004350
SyntenyLsi03G004350
Gene Ontology termsGO:0000373 - Group II intron splicing (biological process)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001890 - RNA-binding, CRM domain
IPR035920 - YhbY-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK06679.1 chloroplastic group IIA intron splicing facilitator CRS1 [Cucumis melo var. makuwa]1.0e-10182.51Show/hide
Query:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM
        + +MKTGGMVVW KKNALVVYRGCNYP++LK STKMQVDSS CSKT +L+ NP+K+ETDT  S+  HYESGL+Q  ND+DGEWEEASS FL  HGN QP+
Subjt:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM

Query:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL
        SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPP T   LTD  L HLRKLAHSLPTHFVLGRNR LQGLA AILKLWEKS+
Subjt:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL

Query:  IAKIALKWGVPNTNNEQMACELK
        IAKIALKWGVPNTNNEQMA ELK
Subjt:  IAKIALKWGVPNTNNEQMACELK

XP_008441260.1 PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Cucumis melo]1.0e-10182.51Show/hide
Query:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM
        + +MKTGGMVVW KKNALVVYRGCNYP++LK STKMQVDSS CSKT +L+ NP+K+ETDT  S+  HYESGL+Q  ND+DGEWEEASS FL  HGN QP+
Subjt:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM

Query:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL
        SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPP T   LTD  L HLRKLAHSLPTHFVLGRNR LQGLA AILKLWEKS+
Subjt:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL

Query:  IAKIALKWGVPNTNNEQMACELK
        IAKIALKWGVPNTNNEQMA ELK
Subjt:  IAKIALKWGVPNTNNEQMACELK

XP_038884366.1 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X1 [Benincasa hispida]2.4e-11186.16Show/hide
Query:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM
        + +MKTGGMVVW KKN LVVYRGCNYP+ LKHST+MQVDSSYCSKT +++ NP+KLETD+DFS G+HYE+ LNQ +NDNDGEWEE S+SFL H GNFQP+
Subjt:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM

Query:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL
        SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPP T P LTD ELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL
Subjt:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL

Query:  IAKIALKWGVPNTNNEQMACELKA
        IAKIALKWGVPNTNNEQMACELK+
Subjt:  IAKIALKWGVPNTNNEQMACELKA

XP_038884367.1 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X2 [Benincasa hispida]2.4e-11186.16Show/hide
Query:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM
        + +MKTGGMVVW KKN LVVYRGCNYP+ LKHST+MQVDSSYCSKT +++ NP+KLETD+DFS G+HYE+ LNQ +NDNDGEWEE S+SFL H GNFQP+
Subjt:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM

Query:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL
        SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPP T P LTD ELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL
Subjt:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL

Query:  IAKIALKWGVPNTNNEQMACELKA
        IAKIALKWGVPNTNNEQMACELK+
Subjt:  IAKIALKWGVPNTNNEQMACELKA

XP_038884368.1 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Benincasa hispida]2.4e-11186.16Show/hide
Query:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM
        + +MKTGGMVVW KKN LVVYRGCNYP+ LKHST+MQVDSSYCSKT +++ NP+KLETD+DFS G+HYE+ LNQ +NDNDGEWEE S+SFL H GNFQP+
Subjt:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM

Query:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL
        SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPP T P LTD ELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL
Subjt:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL

Query:  IAKIALKWGVPNTNNEQMACELKA
        IAKIALKWGVPNTNNEQMACELK+
Subjt:  IAKIALKWGVPNTNNEQMACELKA

TrEMBL top hitse value%identityAlignment
A0A0A0LSY1 Uncharacterized protein4.3e-9875.62Show/hide
Query:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM
        + +MKTGGMVVW KKNALVVYRGCNYP++LKHSTK QV  S          NP+K+ETDT FS+  HYESGLN+ +NDNDGEWEEASS FL  H N QP+
Subjt:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM

Query:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL
        SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPP T   LTD  L HLRKLAHSLPTHFVLGRNRKLQGLAA+ILKLWEKS+
Subjt:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL

Query:  IAKIALKWGVPNTNNEQMACELK-----ASFLEIIFVLKLYK
        IAKIALKWGVPNT+NEQMA ELK        L   FV+ LY+
Subjt:  IAKIALKWGVPNTNNEQMACELK-----ASFLEIIFVLKLYK

A0A1S3B2K3 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic4.9e-10282.51Show/hide
Query:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM
        + +MKTGGMVVW KKNALVVYRGCNYP++LK STKMQVDSS CSKT +L+ NP+K+ETDT  S+  HYESGL+Q  ND+DGEWEEASS FL  HGN QP+
Subjt:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM

Query:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL
        SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPP T   LTD  L HLRKLAHSLPTHFVLGRNR LQGLA AILKLWEKS+
Subjt:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL

Query:  IAKIALKWGVPNTNNEQMACELK
        IAKIALKWGVPNTNNEQMA ELK
Subjt:  IAKIALKWGVPNTNNEQMACELK

A0A5D3C8J4 Chloroplastic group IIA intron splicing facilitator CRS14.9e-10282.51Show/hide
Query:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM
        + +MKTGGMVVW KKNALVVYRGCNYP++LK STKMQVDSS CSKT +L+ NP+K+ETDT  S+  HYESGL+Q  ND+DGEWEEASS FL  HGN QP+
Subjt:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM

Query:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL
        SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPP T   LTD  L HLRKLAHSLPTHFVLGRNR LQGLA AILKLWEKS+
Subjt:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL

Query:  IAKIALKWGVPNTNNEQMACELK
        IAKIALKWGVPNTNNEQMA ELK
Subjt:  IAKIALKWGVPNTNNEQMACELK

A0A6J1BZ18 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic1.3e-9478.92Show/hide
Query:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM
        + +MKTGG+VVW KKNALVVYRG NYP+ LK S KMQV  S  S+    K +P KLETD++F +G+HYESGL+Q   DNDGE E+AS+SFL  H +FQ M
Subjt:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM

Query:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL
        SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPP RRCPP T PKLTD ELL+LR+LAH LPTHFVLGRNRKLQGLAAA+LKLWEKSL
Subjt:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL

Query:  IAKIALKWGVPNTNNEQMACELK
        IAKIALKWGVPNTNNEQMACELK
Subjt:  IAKIALKWGVPNTNNEQMACELK

A0A6J1JY40 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X19.0e-9679.46Show/hide
Query:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM
        + +MKTGGMVVW KKNALVVYRGCNYP+ LK  TKMQVDS YCS+T         LETDTDFS+GEH E G N+ +N+NDGEW EAS+SFL         
Subjt:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM

Query:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL
        SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPP+RRCPP T PKLTD ELL+LRKLAH LPTHFVLGRNRKLQGLAAAILKLWEKSL
Subjt:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL

Query:  IAKIALKWGVPNTNNEQMACELKA
        IAKIALKWGVPNTNNEQMA ELK+
Subjt:  IAKIALKWGVPNTNNEQMACELKA

SwissProt top hitse value%identityAlignment
Q2R1U8 CRM-domain containing factor CFM3, chloroplastic/mitochondrial4.5e-3642.08Show/hide
Query:  QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSG
        + KTGG+V+W    ++ +YRG  Y +        +   +   K+S+ +P    L  +    V E         + DN+G    A  S        +P+  
Subjt:  QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSG

Query:  SLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSLIA
          YE E D+LLD+LGPR+ DW    P PVDAD+LP  VPGY PPFR  P    P L+  +  +LR+LA  LP HF LGR+R+LQGLAAA++KLWEKS IA
Subjt:  SLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSLIA

Query:  KIALKWGVPNTNNEQMACELK
        KIALK GV  T +E+MA ++K
Subjt:  KIALKWGVPNTNNEQMACELK

Q6YYA3 Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic3.8e-5152.04Show/hide
Query:  QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSG
        ++KTGG+VVW +     VYRG +Y   L+++ + +   +Y  + S     P+     T  S G+++        NDND    EA         + +P+ G
Subjt:  QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSG

Query:  SLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSLIA
        +LYERE +RLLD LGPRFIDWW + PLPVDAD+LPEVVP +  PFR+CPP   P L D+EL +LRK A  LPTHFVLGRN KLQGLAAAILKLWEKSLIA
Subjt:  SLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSLIA

Query:  KIALKWGVPNTNNEQMACELK
        K+A+K G+ NTN+EQMA  LK
Subjt:  KIALKWGVPNTNNEQMACELK

Q8L7C2 CRM-domain containing factor CFM2, chloroplastic1.5e-3942.98Show/hide
Query:  QMKTGGMVVWCKKNALVVYRGCNYPV-------DLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHG
        + KTGG+V+W   + +++YRG NY         DL H       S         +   I  E+       +  +  L QG+   D               
Subjt:  QMKTGGMVVWCKKNALVVYRGCNYPV-------DLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHG

Query:  NFQPMSGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKL
         FQ         E DRLL+ LGPRF DWW + PLPVD D+LP VVP Y  PFR  P    PKLTDDE+  +R+L   LP HF LGRNR LQGLA AI+KL
Subjt:  NFQPMSGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKL

Query:  WEKSLIAKIALKWGVPNTNNEQMACELK
        WEK  +AKIA+K GV NTN+E MA ELK
Subjt:  WEKSLIAKIALKWGVPNTNNEQMACELK

Q9FYT6 Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic1.4e-5049.32Show/hide
Query:  QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSG
        ++KTGG+VVW K +   VYRG  Y  + KHS                            F    H +    +      G+ +E            +P+ G
Subjt:  QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSG

Query:  SLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSLIA
        +LYERE +RLLD LGPRF+DWW   PLPVDAD+LPE VPG   P+R CPP   P L D+EL +LRKLA  LPTHF LGRN +LQGLAAAILKLWEKSLIA
Subjt:  SLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSLIA

Query:  KIALKWGVPNTNNEQMACELK
        KIA+K G+ NTNNEQMA  LK
Subjt:  KIALKWGVPNTNNEQMACELK

Q9LF10 Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic9.7e-4770.97Show/hide
Query:  MSGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKS
        +S SLYERE DRLLD LGPR++DWWM +P PVDAD+LPEVV GYM P RRCPP T  KLTD+EL +LR +A  LP HFVLGRN  LQGLA+AI+KLWEK 
Subjt:  MSGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKS

Query:  LIAKIALKWGVPNTNNEQMACELK
        +IAKIA+KWG  NTNNE+MA EL+
Subjt:  LIAKIALKWGVPNTNNEQMACELK

Arabidopsis top hitse value%identityAlignment
AT3G01370.1 CRM family member 21.1e-4042.98Show/hide
Query:  QMKTGGMVVWCKKNALVVYRGCNYPV-------DLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHG
        + KTGG+V+W   + +++YRG NY         DL H       S         +   I  E+       +  +  L QG+   D               
Subjt:  QMKTGGMVVWCKKNALVVYRGCNYPV-------DLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHG

Query:  NFQPMSGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKL
         FQ         E DRLL+ LGPRF DWW + PLPVD D+LP VVP Y  PFR  P    PKLTDDE+  +R+L   LP HF LGRNR LQGLA AI+KL
Subjt:  NFQPMSGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKL

Query:  WEKSLIAKIALKWGVPNTNNEQMACELK
        WEK  +AKIA+K GV NTN+E MA ELK
Subjt:  WEKSLIAKIALKWGVPNTNNEQMACELK

AT3G18390.1 CRS1 / YhbY (CRM) domain-containing protein1.3e-3541.26Show/hide
Query:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM
        + + +TGGMV+W   + +VVYRG +Y      S +M        K +L  P+          S G+   +       DN           +++    + M
Subjt:  MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPM

Query:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL
        +    E E + LLD LGPRF +WW    LPVDAD+LP  +PGY  PFR  P      LT+ E+ +LRK+  +LP HF LGRNR  QGLAAAIL++WEKSL
Subjt:  SGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSL

Query:  IAKIALKWGVPNTNNEQMACELK
        IAKIA+K G+ NTNN+ MA E+K
Subjt:  IAKIALKWGVPNTNNEQMACELK

AT3G23070.1 CRM family member 3A1.3e-3538.91Show/hide
Query:  QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSG
        + KTGG+V+W    ++ +YRG +Y +      K +                 + ET  +  +  H E+      +D      +            Q    
Subjt:  QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSG

Query:  SLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSLIA
          YE E D LLDDLGPRF+DW    PLPVDAD+LP  +P Y PPFR  P      L   E   LR+LA S+P HF LGR+R+LQGLA A+++LWEKS++A
Subjt:  SLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSLIA

Query:  KIALKWGVPNTNNEQMACELK
        KIA+K GV +T +E+MA +LK
Subjt:  KIALKWGVPNTNNEQMACELK

AT4G29750.1 CRS1 / YhbY (CRM) domain-containing protein2.8e-3338.39Show/hide
Query:  QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQ---P
        + KTGG+V+W   +++V+YRG +Y +              C +T  +K N ++   +   SV                      +  +++  GN+    P
Subjt:  QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQ---P

Query:  MSGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKS
                E + LLD++GPRF DW    P PVDAD+LP  V GY  PFR  P    P L++ E+  +R+LA + P HF LGR+R+LQGLA A++KLW KS
Subjt:  MSGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKS

Query:  LIAKIALKWGVPNTNNEQMACELK
         IAKIA+K GV NT NE+MA ELK
Subjt:  LIAKIALKWGVPNTNNEQMACELK

AT5G16180.1 ortholog of maize chloroplast splicing factor CRS16.9e-4870.97Show/hide
Query:  MSGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKS
        +S SLYERE DRLLD LGPR++DWWM +P PVDAD+LPEVV GYM P RRCPP T  KLTD+EL +LR +A  LP HFVLGRN  LQGLA+AI+KLWEK 
Subjt:  MSGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKS

Query:  LIAKIALKWGVPNTNNEQMACELK
        +IAKIA+KWG  NTNNE+MA EL+
Subjt:  LIAKIALKWGVPNTNNEQMACELK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCAAATGAAAACTGGTGGTATGGTTGTTTGGTGTAAGAAGAATGCTCTTGTTGTTTACCGGGGTTGCAATTATCCAGTGGATTTGAAACATAGTACAAAA
ATGCAAGTAGATAGCTCTTACTGTTCCAAAACTTCGTTGCTGAAACCAAATCCAATCAAGCTGGAAACAGACACTGATTTTTCAGTTGGTGAACATTATGAAAGT
GGGTTAAATCAAGGTTTAAATGACAATGATGGCGAATGGGAAGAAGCTTCTAGTTCTTTCTTGAGGCATCATGGAAATTTCCAACCAATGAGTGGATCACTCTAT
GAGAGGGAAACTGACAGGCTACTAGATGATTTGGGCCCTCGCTTTATTGATTGGTGGATGCACAAACCTCTGCCGGTTGATGCTGACATGCTTCCAGAGGTGGTT
CCTGGATATATGCCTCCATTTAGGCGCTGTCCACCCTTGACTATACCAAAGCTTACAGATGATGAACTACTACATCTGAGGAAGCTTGCACATTCCTTACCTACT
CATTTTGTCCTTGGGAGAAACAGAAAACTTCAAGGGTTGGCTGCTGCCATCTTAAAGTTGTGGGAGAAAAGTCTGATAGCTAAGATTGCTTTGAAGTGGGGGGTT
CCAAATACAAACAATGAGCAGATGGCATGCGAACTTAAGGCAAGTTTTCTAGAAATAATATTTGTTCTAAAACTGTATAAGTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCCAAATGAAAACTGGTGGTATGGTTGTTTGGTGTAAGAAGAATGCTCTTGTTGTTTACCGGGGTTGCAATTATCCAGTGGATTTGAAACATAGTACAAAA
ATGCAAGTAGATAGCTCTTACTGTTCCAAAACTTCGTTGCTGAAACCAAATCCAATCAAGCTGGAAACAGACACTGATTTTTCAGTTGGTGAACATTATGAAAGT
GGGTTAAATCAAGGTTTAAATGACAATGATGGCGAATGGGAAGAAGCTTCTAGTTCTTTCTTGAGGCATCATGGAAATTTCCAACCAATGAGTGGATCACTCTAT
GAGAGGGAAACTGACAGGCTACTAGATGATTTGGGCCCTCGCTTTATTGATTGGTGGATGCACAAACCTCTGCCGGTTGATGCTGACATGCTTCCAGAGGTGGTT
CCTGGATATATGCCTCCATTTAGGCGCTGTCCACCCTTGACTATACCAAAGCTTACAGATGATGAACTACTACATCTGAGGAAGCTTGCACATTCCTTACCTACT
CATTTTGTCCTTGGGAGAAACAGAAAACTTCAAGGGTTGGCTGCTGCCATCTTAAAGTTGTGGGAGAAAAGTCTGATAGCTAAGATTGCTTTGAAGTGGGGGGTT
CCAAATACAAACAATGAGCAGATGGCATGCGAACTTAAGGCAAGTTTTCTAGAAATAATATTTGTTCTAAAACTGTATAAGTTGTGA
Protein sequenceShow/hide protein sequence
MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSGSLY
ERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSLIAKIALKWGV
PNTNNEQMACELKASFLEIIFVLKLYKL