; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G004360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G004360
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionchloroplastic group IIA intron splicing facilitator CRS1, chloroplastic
Genome locationchr03:4920202..4921023
RNA-Seq ExpressionLsi03G004360
SyntenyLsi03G004360
Gene Ontology termsGO:0000373 - Group II intron splicing (biological process)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001890 - RNA-binding, CRM domain
IPR035920 - YhbY-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441260.1 PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Cucumis melo]6.6e-10582.21Show/hide
Query:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCS
        MLPTTSFS  LP ILIPPSFRS S+LLH STH PISAT TPSQSSVLSE PS SNA +NLRTAPWMK PLHL+ QQEE VD A P+RRNGSD +GGDKCS
Subjt:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCS

Query:  RALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEK-DDGIVLRRTKKKTVTSAELNLDKVLLERLRGEAS
        RAL +  I+KTGKYAMRRIAKSIGKL++NGD GETRM LEEVEFGDF LEGFEESGTRRRMPWEK DDGIV RR KKKT+TSAELNLD++LLERL+ +AS
Subjt:  RALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEK-DDGIVLRRTKKKTVTSAELNLDKVLLERLRGEAS

Query:  KMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR
        KMEKWVKVNKVGVTQDVVN IQ  WERNELAMLKFDVPLSRNMDRAREIVE++
Subjt:  KMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR

XP_011649926.1 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Cucumis sativus]5.8e-10985.49Show/hide
Query:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQ--EESVDLAKPERRNGSDGHGGDK
        MLPTTSFS +LPR LIPPSFRS S LLH STH PISATSTPSQSSVL E PS SNA VNLRTAPWMK PLHL+PQQ  EE VD A P+RRNGSDG G DK
Subjt:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQ--EESVDLAKPERRNGSDGHGGDK

Query:  CSRALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEK-DDGIVLRRTKKKTVTSAELNLDKVLLERLRGE
        CSRAL +  IDKTGKYAMRRIAKSIGKL++NGD GETRMKLEEVEFG F LEGFEESGTRRRMPWEK DDGIVLRR KKKTVTSAELNLD+VLLERL+GE
Subjt:  CSRALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEK-DDGIVLRRTKKKTVTSAELNLDKVLLERLRGE

Query:  ASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR
        ASKMEKWVKVNKVGVTQDVVN+IQFMWERNELAMLKFDVPLSRNMDRAREIVE++
Subjt:  ASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR

XP_038884366.1 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X1 [Benincasa hispida]4.0e-11890.87Show/hide
Query:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCS
        MLPTTSFS   PRILIPPSFRSDSTLLH S HKPISATSTPSQSSVLSE PSTSNA VNLRTAPWMKGPL+L+PQQEE VDLAKPERRNGSDG+GG+KCS
Subjt:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCS

Query:  RALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEKDDGIVLRRTKKKTVTSAELNLDKVLLERLRGEASK
        RALA+GRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFG F LEGFEESGTRRRMPWEKD+GIVLRRTKKKTVTSAELNLDK+LLERLR  ASK
Subjt:  RALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEKDDGIVLRRTKKKTVTSAELNLDKVLLERLRGEASK

Query:  MEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR
        MEKWVKVNKVGVT+DVVNKIQF+WERNELAMLKFDVPLSRNMDRAREIVE++
Subjt:  MEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR

XP_038884367.1 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X2 [Benincasa hispida]4.0e-11890.87Show/hide
Query:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCS
        MLPTTSFS   PRILIPPSFRSDSTLLH S HKPISATSTPSQSSVLSE PSTSNA VNLRTAPWMKGPL+L+PQQEE VDLAKPERRNGSDG+GG+KCS
Subjt:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCS

Query:  RALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEKDDGIVLRRTKKKTVTSAELNLDKVLLERLRGEASK
        RALA+GRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFG F LEGFEESGTRRRMPWEKD+GIVLRRTKKKTVTSAELNLDK+LLERLR  ASK
Subjt:  RALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEKDDGIVLRRTKKKTVTSAELNLDKVLLERLRGEASK

Query:  MEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR
        MEKWVKVNKVGVT+DVVNKIQF+WERNELAMLKFDVPLSRNMDRAREIVE++
Subjt:  MEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR

XP_038884368.1 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Benincasa hispida]4.0e-11890.87Show/hide
Query:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCS
        MLPTTSFS   PRILIPPSFRSDSTLLH S HKPISATSTPSQSSVLSE PSTSNA VNLRTAPWMKGPL+L+PQQEE VDLAKPERRNGSDG+GG+KCS
Subjt:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCS

Query:  RALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEKDDGIVLRRTKKKTVTSAELNLDKVLLERLRGEASK
        RALA+GRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFG F LEGFEESGTRRRMPWEKD+GIVLRRTKKKTVTSAELNLDK+LLERLR  ASK
Subjt:  RALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEKDDGIVLRRTKKKTVTSAELNLDKVLLERLRGEASK

Query:  MEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR
        MEKWVKVNKVGVT+DVVNKIQF+WERNELAMLKFDVPLSRNMDRAREIVE++
Subjt:  MEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR

TrEMBL top hitse value%identityAlignment
A0A0A0LSY1 Uncharacterized protein2.8e-10985.49Show/hide
Query:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQ--EESVDLAKPERRNGSDGHGGDK
        MLPTTSFS +LPR LIPPSFRS S LLH STH PISATSTPSQSSVL E PS SNA VNLRTAPWMK PLHL+PQQ  EE VD A P+RRNGSDG G DK
Subjt:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQ--EESVDLAKPERRNGSDGHGGDK

Query:  CSRALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEK-DDGIVLRRTKKKTVTSAELNLDKVLLERLRGE
        CSRAL +  IDKTGKYAMRRIAKSIGKL++NGD GETRMKLEEVEFG F LEGFEESGTRRRMPWEK DDGIVLRR KKKTVTSAELNLD+VLLERL+GE
Subjt:  CSRALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEK-DDGIVLRRTKKKTVTSAELNLDKVLLERLRGE

Query:  ASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR
        ASKMEKWVKVNKVGVTQDVVN+IQFMWERNELAMLKFDVPLSRNMDRAREIVE++
Subjt:  ASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR

A0A1S3B2K3 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic3.2e-10582.21Show/hide
Query:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCS
        MLPTTSFS  LP ILIPPSFRS S+LLH STH PISAT TPSQSSVLSE PS SNA +NLRTAPWMK PLHL+ QQEE VD A P+RRNGSD +GGDKCS
Subjt:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCS

Query:  RALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEK-DDGIVLRRTKKKTVTSAELNLDKVLLERLRGEAS
        RAL +  I+KTGKYAMRRIAKSIGKL++NGD GETRM LEEVEFGDF LEGFEESGTRRRMPWEK DDGIV RR KKKT+TSAELNLD++LLERL+ +AS
Subjt:  RALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEK-DDGIVLRRTKKKTVTSAELNLDKVLLERLRGEAS

Query:  KMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR
        KMEKWVKVNKVGVTQDVVN IQ  WERNELAMLKFDVPLSRNMDRAREIVE++
Subjt:  KMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR

A0A5D3C8J4 Chloroplastic group IIA intron splicing facilitator CRS13.2e-10582.21Show/hide
Query:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCS
        MLPTTSFS  LP ILIPPSFRS S+LLH STH PISAT TPSQSSVLSE PS SNA +NLRTAPWMK PLHL+ QQEE VD A P+RRNGSD +GGDKCS
Subjt:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCS

Query:  RALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEK-DDGIVLRRTKKKTVTSAELNLDKVLLERLRGEAS
        RAL +  I+KTGKYAMRRIAKSIGKL++NGD GETRM LEEVEFGDF LEGFEESGTRRRMPWEK DDGIV RR KKKT+TSAELNLD++LLERL+ +AS
Subjt:  RALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEK-DDGIVLRRTKKKTVTSAELNLDKVLLERLRGEAS

Query:  KMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR
        KMEKWVKVNKVGVTQDVVN IQ  WERNELAMLKFDVPLSRNMDRAREIVE++
Subjt:  KMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR

A0A6J1JVV5 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X26.2e-10181.18Show/hide
Query:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHK---PISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGD
        ML TT FSPALPRIL PPSF SDST LH S+HK   PI ATST SQSS+LSE  S SNA +N RTAPW + PL+L+P +EE VDLAKPER NGSDGHGG 
Subjt:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHK---PISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGD

Query:  KCSRALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEKDDGIVLRRTKKKTVTSAELNLDKVLLERLRGE
        K  RALA+ R  KTGKYAMRRIAKSI KLQKNGDSGET MKLEEVEFGDF LEGF+ES TR RMPWEKDDGIVLRR KKKTVTSAEL+LDKVLLERLRGE
Subjt:  KCSRALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEKDDGIVLRRTKKKTVTSAELNLDKVLLERLRGE

Query:  ASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR
        ASKME WVKVNK+GVTQDVVNKI F WE NELAMLKFDVPLSRNMDRAREIVEVR
Subjt:  ASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR

A0A6J1JY40 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X13.1e-10080.39Show/hide
Query:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHK---PISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGD
        ML TT FSPALPRIL PPSF SDST LH S+HK   PI ATST SQSS+LSE  S SNA +N RTAPW + PL+L+P +EE VDLAKPER NGSDGHGG 
Subjt:  MLPTTSFSPALPRILIPPSFRSDSTLLH-STHK---PISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGD

Query:  KCSRALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEKDDGIVLRRTKKKTVTSAELNLDKVLLERLRGE
        K  RALA+ R  KTGKYAMRRIAKSI KLQKNGDSGET MKLEEVEFGDF LEGF+ES TR RMPWEKDDGIVLRR KKKTVTSAEL+LDKVLLERLRGE
Subjt:  KCSRALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEKDDGIVLRRTKKKTVTSAELNLDKVLLERLRGE

Query:  ASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR
        ASKME WVKVNK+GVTQDVVNKI F WE NELAMLKFDVPLSRNMDRAREIVE++
Subjt:  ASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR

SwissProt top hitse value%identityAlignment
F4JVH1 CRM-domain containing factor CFM3B, chloroplastic6.8e-0426.6Show/hide
Query:  KPQQEESVDLAKPERRNGSDGHGGDKCSRALANGRIDKTGKYAM--------------RRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLE---GFEES
        K ++   + +   E  + S   GG   S +     ++K  KY                RRI KS         S E R  +EE   G F  E   G    
Subjt:  KPQQEESVDLAKPERRNGSDGHGGDKCSRALANGRIDKTGKYAM--------------RRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLE---GFEES

Query:  GTRRRMPWEKDDGIVLRR--------TKKKTVTSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRARE
            + PWEK   +  +          K+   + AE+ L +  L RLR    + +  ++V   GVTQ VV+ IQ  W+ +E+  LK +   + NM R  E
Subjt:  GTRRRMPWEKDDGIVLRR--------TKKKTVTSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRARE

Query:  IVE
        I+E
Subjt:  IVE

Q6YYA3 Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic4.7e-1342.45Show/hide
Query:  EESGTRRRMPW----EKDDGIVLRRTKKKTV-TSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWER-NELAMLKFDVPLSRNMDRAR
        E+ G RR +PW    +++  +VLRR KK  V T AE  L+   LERLR  A   E+W +  K G+T +VV +++  W +  ELA ++   PL R MDRAR
Subjt:  EESGTRRRMPW----EKDDGIVLRRTKKKTV-TSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWER-NELAMLKFDVPLSRNMDRAR

Query:  EIVEVR
        EI+E++
Subjt:  EIVEVR

Q8L7C2 CRM-domain containing factor CFM2, chloroplastic6.8e-0428.89Show/hide
Query:  WEKDDGIVLRRTKKKTVTSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR
        W+K+  +  R+ ++K  + AEL L    L RLR    ++ K +K+ K G+T+ +VN I   W   E+  +  +     NM R  +++E +
Subjt:  WEKDDGIVLRRTKKKTVTSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR

Q9FYT6 Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic1.4e-0940Show/hide
Query:  ESGTRRRMPW--EKDDG--IVLRRTKK-KTVTSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMW-ERNELAMLKFDVPLSRNMDRARE
        E    R +PW   +D+G  + LRR KK +  T AE  L+   L RLR  A  + +W +  K GVT +VV +++  W    ELA ++   PL R+MDRARE
Subjt:  ESGTRRRMPW--EKDDG--IVLRRTKK-KTVTSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMW-ERNELAMLKFDVPLSRNMDRARE

Query:  IVEVR
        I+E++
Subjt:  IVEVR

Q9LF10 Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic1.5e-3544.8Show/hide
Query:  SATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCSRALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGET
        S  +  SQ     E+   S+A + + TAPWMKGPL L+P  +E +D  K  +    +    +K  +AL        GK AM++I +++ KL ++ DS ET
Subjt:  SATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCSRALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGET

Query:  RM-KLEEVEFGDFCLEGFEESGT-RRRMPWEK-DDGIVLRRTKKKTV-TSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAM
        +M  L E E+     E  E       +MPWE+ ++  +LRR KK++V T+AEL LD+ LL RLR EASKM KWV V K GVT+ VVNKI+ MW+ NELAM
Subjt:  RM-KLEEVEFGDFCLEGFEESGT-RRRMPWEK-DDGIVLRRTKKKTV-TSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAM

Query:  LKFDVPLSRNMDRAREIVEVR
        ++FDVPL RNM+RA+EI+E++
Subjt:  LKFDVPLSRNMDRAREIVEVR

Arabidopsis top hitse value%identityAlignment
AT3G01370.1 CRM family member 24.9e-0528.89Show/hide
Query:  WEKDDGIVLRRTKKKTVTSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR
        W+K+  +  R+ ++K  + AEL L    L RLR    ++ K +K+ K G+T+ +VN I   W   E+  +  +     NM R  +++E +
Subjt:  WEKDDGIVLRRTKKKTVTSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR

AT3G18390.1 CRS1 / YhbY (CRM) domain-containing protein1.7e-0525.28Show/hide
Query:  KPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCSRALANGR-----IDK-TGKYAMRRIAKSIGKL
        +P S+  T  +S+  S +    +   +  T PW+      K     S        + G + +GGD+   A          ++K  G+ A+ RI   +  L
Subjt:  KPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCSRALANGR-----IDK-TGKYAMRRIAKSIGKL

Query:  QKNGD---------------------SGETR----MKLEEVEFGDFCLEGFE-ESGTRRRMPWEKDD------------GI-VLRRTKKKTVTSAELNLD
            D                     +GE R    +K E V       EG E E      +PWEK++            G+ V+++ + +  + AEL ++
Subjt:  QKNGD---------------------SGETR----MKLEEVEFGDFCLEGFE-ESGTRRRMPWEKDD------------GI-VLRRTKKKTVTSAELNLD

Query:  KVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR
           L RLR +   +   + + K G+TQ V+ KI   W + EL  LKF   L+R+M  A EIVE R
Subjt:  KVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVEVR

AT4G14510.1 CRM family member 3B4.9e-0526.6Show/hide
Query:  KPQQEESVDLAKPERRNGSDGHGGDKCSRALANGRIDKTGKYAM--------------RRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLE---GFEES
        K ++   + +   E  + S   GG   S +     ++K  KY                RRI KS         S E R  +EE   G F  E   G    
Subjt:  KPQQEESVDLAKPERRNGSDGHGGDKCSRALANGRIDKTGKYAM--------------RRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLE---GFEES

Query:  GTRRRMPWEKDDGIVLRR--------TKKKTVTSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRARE
            + PWEK   +  +          K+   + AE+ L +  L RLR    + +  ++V   GVTQ VV+ IQ  W+ +E+  LK +   + NM R  E
Subjt:  GTRRRMPWEKDDGIVLRR--------TKKKTVTSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRARE

Query:  IVE
        I+E
Subjt:  IVE

AT4G29750.1 CRS1 / YhbY (CRM) domain-containing protein3.6e-0841.03Show/hide
Query:  RTKKKTVTSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVE
        RT+K     AE  + +  L+RLR  A +M + VKV   G+TQ +V  I   WE +E+  LKF  P S NM R  E++E
Subjt:  RTKKKTVTSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAMLKFDVPLSRNMDRAREIVE

AT5G16180.1 ortholog of maize chloroplast splicing factor CRS11.1e-3644.8Show/hide
Query:  SATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCSRALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGET
        S  +  SQ     E+   S+A + + TAPWMKGPL L+P  +E +D  K  +    +    +K  +AL        GK AM++I +++ KL ++ DS ET
Subjt:  SATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCSRALANGRIDKTGKYAMRRIAKSIGKLQKNGDSGET

Query:  RM-KLEEVEFGDFCLEGFEESGT-RRRMPWEK-DDGIVLRRTKKKTV-TSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAM
        +M  L E E+     E  E       +MPWE+ ++  +LRR KK++V T+AEL LD+ LL RLR EASKM KWV V K GVT+ VVNKI+ MW+ NELAM
Subjt:  RM-KLEEVEFGDFCLEGFEESGT-RRRMPWEK-DDGIVLRRTKKKTV-TSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQFMWERNELAM

Query:  LKFDVPLSRNMDRAREIVEVR
        ++FDVPL RNM+RA+EI+E++
Subjt:  LKFDVPLSRNMDRAREIVEVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCCGACAACTTCCTTCTCTCCAGCTCTACCAAGGATTCTCATTCCCCCATCCTTTCGATCAGATTCCACTCTCTTACACTCCACCCACAAGCCTATTTCCGCCAC
TTCTACACCATCACAATCATCTGTTCTATCCGAGTCGCCTTCCACCTCCAATGCCACCGTTAATCTCCGTACAGCGCCATGGATGAAGGGTCCTCTCCACCTTAAACCCC
AACAAGAAGAAAGCGTGGATCTCGCAAAGCCCGAAAGAAGAAATGGGTCCGACGGTCATGGAGGGGATAAATGTTCTAGGGCTTTAGCTAATGGAAGAATTGATAAAACT
GGGAAATACGCGATGCGGCGAATTGCTAAAAGCATCGGAAAGCTTCAGAAAAATGGGGATTCGGGGGAAACCCGAATGAAATTGGAGGAGGTTGAGTTTGGGGATTTTTG
TTTGGAGGGTTTTGAGGAGTCTGGAACTCGCCGGAGAATGCCATGGGAGAAGGATGATGGGATTGTTTTGCGGAGGACTAAGAAGAAAACAGTGACTTCAGCGGAGTTGA
ATCTTGATAAAGTGTTGCTTGAAAGGTTGAGGGGTGAGGCTTCAAAAATGGAGAAATGGGTGAAGGTCAATAAAGTTGGGGTTACTCAAGATGTTGTGAATAAGATACAA
TTCATGTGGGAAAGAAATGAGCTTGCTATGCTGAAATTCGATGTGCCCTTGAGCCGCAATATGGATAGAGCACGAGAAATTGTTGAGGTAAGGTTGGTTTTGGTTAACTT
TCTCTTTTGTATTCCAAGTATTTTGTTATTTGAAGTCCTTTCTACTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCCGACAACTTCCTTCTCTCCAGCTCTACCAAGGATTCTCATTCCCCCATCCTTTCGATCAGATTCCACTCTCTTACACTCCACCCACAAGCCTATTTCCGCCAC
TTCTACACCATCACAATCATCTGTTCTATCCGAGTCGCCTTCCACCTCCAATGCCACCGTTAATCTCCGTACAGCGCCATGGATGAAGGGTCCTCTCCACCTTAAACCCC
AACAAGAAGAAAGCGTGGATCTCGCAAAGCCCGAAAGAAGAAATGGGTCCGACGGTCATGGAGGGGATAAATGTTCTAGGGCTTTAGCTAATGGAAGAATTGATAAAACT
GGGAAATACGCGATGCGGCGAATTGCTAAAAGCATCGGAAAGCTTCAGAAAAATGGGGATTCGGGGGAAACCCGAATGAAATTGGAGGAGGTTGAGTTTGGGGATTTTTG
TTTGGAGGGTTTTGAGGAGTCTGGAACTCGCCGGAGAATGCCATGGGAGAAGGATGATGGGATTGTTTTGCGGAGGACTAAGAAGAAAACAGTGACTTCAGCGGAGTTGA
ATCTTGATAAAGTGTTGCTTGAAAGGTTGAGGGGTGAGGCTTCAAAAATGGAGAAATGGGTGAAGGTCAATAAAGTTGGGGTTACTCAAGATGTTGTGAATAAGATACAA
TTCATGTGGGAAAGAAATGAGCTTGCTATGCTGAAATTCGATGTGCCCTTGAGCCGCAATATGGATAGAGCACGAGAAATTGTTGAGGTAAGGTTGGTTTTGGTTAACTT
TCTCTTTTGTATTCCAAGTATTTTGTTATTTGAAGTCCTTTCTACTTTGTAA
Protein sequenceShow/hide protein sequence
MLPTTSFSPALPRILIPPSFRSDSTLLHSTHKPISATSTPSQSSVLSESPSTSNATVNLRTAPWMKGPLHLKPQQEESVDLAKPERRNGSDGHGGDKCSRALANGRIDKT
GKYAMRRIAKSIGKLQKNGDSGETRMKLEEVEFGDFCLEGFEESGTRRRMPWEKDDGIVLRRTKKKTVTSAELNLDKVLLERLRGEASKMEKWVKVNKVGVTQDVVNKIQ
FMWERNELAMLKFDVPLSRNMDRAREIVEVRLVLVNFLFCIPSILLFEVLSTL