; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G004970 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G004970
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCold regulated protein 27, putative isoform 2
Genome locationchr03:5714790..5719005
RNA-Seq ExpressionLsi03G004970
SyntenyLsi03G004970
Gene Ontology termsGO:0009409 - response to cold (biological process)
GO:0042752 - regulation of circadian rhythm (biological process)
InterPro domainsIPR044678 - Cold-regulated protein 27/28


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031301.1 Cold regulated protein 27, putative isoform 2 [Cucumis melo var. makuwa]1.4e-9879.12Show/hide
Query:  MGDSHTPSSISPPPPPLPDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLS
        MGDSHTPS +S    PL D RQS MPP  S  DST FNS+S SSSITVDGS  FL SHH LQLDAE THWTDE+HRSYLDSLEASFVQGLHQ RR H LS
Subjt:  MGDSHTPSSISPPPPPLPDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLS

Query:  TKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQI
        +KQKMRRKPIM + SSSELM+LQDASWQKANIGRNDPLLD TA SPAILEDLWIN FPSAGKQC LETPDLLEECGSCSDRR IR+MTNSCGSAR+SQQ 
Subjt:  TKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQI

Query:  PPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQ
         PCC +S TII EVSDQNFVDN PGELSGG+P AKRL+KASS    N Q
Subjt:  PPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQ

XP_004136978.1 cold-regulated protein 27 isoform X1 [Cucumis sativus]6.2e-9476.4Show/hide
Query:  MGDSHTPSSISPPPPPLPDRRQSLMPPSAA--DSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLS
        MGDSHTPS +S   PPL D RQS MP ++A  DST FNS+S SSSIT+DGS  F  SHH  QLDAE THWTDE+HR YLDSLEASFVQ LHQ R  H LS
Subjt:  MGDSHTPSSISPPPPPLPDRRQSLMPPSAA--DSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLS

Query:  TKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQI
         KQKMRRKPI P+ISSSELM+LQDASWQKANIGRNDPLLD TA SPAILEDLWIN FPSAGKQC LETPDLLEEC SCSDRR IR MTNSC SAR+SQ  
Subjt:  TKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQI

Query:  PPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQV
         PCC +S TII EVSDQNFVDN PGELS G+PIAKRL+KASSD S + QV
Subjt:  PPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQV

XP_008454952.1 PREDICTED: uncharacterized protein LOC103495241 isoform X1 [Cucumis melo]3.8e-9979.2Show/hide
Query:  MGDSHTPSSISPPPPPLPDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLS
        MGDSHTPS +S    PL D RQS MPP  S  DST FNS+S SSSITVDGS  FL SHH LQLDAE THWTDE+HRSYLDSLEASFVQGLHQ RR H LS
Subjt:  MGDSHTPSSISPPPPPLPDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLS

Query:  TKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQI
        +KQKMRRKPIM + SSSELM+LQDASWQKANIGRNDPLLD TA SPAILEDLWIN FPSAGKQC LETPDLLEECGSCSDRR IR+MTNSCGSAR+SQQ 
Subjt:  TKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQI

Query:  PPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQV
         PCC +S TII EVSDQNFVDN PGELSGG+P AKRL+KASS    N QV
Subjt:  PPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQV

XP_022972372.1 uncharacterized protein LOC111470946 isoform X1 [Cucurbita maxima]6.4e-9171.21Show/hide
Query:  MGDSHTPSSISPPPPPLPDRRQSLMPPSAADSTRFNSQSDSSSITVDGSN---PFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTL
        M D+HTPSS+SPP       R+S M  SA+D TR NS+S SSS TVD S    P + SHH  QLDA  THWTDE+HR +LD+LEASFVQ LH+ R     
Subjt:  MGDSHTPSSISPPPPPLPDRRQSLMPPSAADSTRFNSQSDSSSITVDGSN---PFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTL

Query:  STKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQ
        S+KQKMRRKPIMPNISSSE M+LQDASWQKANIGR DPLL  TA SPAILED+WIN FPSAG Q   ET D+LEECGSCSDR  IRN TNSC SARSSQQ
Subjt:  STKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQ

Query:  IPPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQVNLRITF
        IPPCCRDS+TI+AEVSDQNFVD HPGELSGG PI KRL+KASSDS GND+V L I F
Subjt:  IPPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQVNLRITF

XP_038887003.1 cold-regulated protein 27 isoform X1 [Benincasa hispida]3.0e-11285.08Show/hide
Query:  MGDSHTPSSISPPPPPLPDRRQSLMPPSAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLSTK
        MG SHT SSIS  PPPLPDRRQSLMPPSA+DSTR  SQS SSSIT+DGSNPFLYSHHSLQLDAE THWTDE+HR YLDSLEASFVQGLHQ RRRH LS +
Subjt:  MGDSHTPSSISPPPPPLPDRRQSLMPPSAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLSTK

Query:  QKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQIPP
        QKM  KP MPNISSSELMILQDASWQKANIGRNDP LD TA SPAILEDLWINRFPSAGKQC  E PD+LEECGSCSDRR +RN +NSCGSARSSQQIPP
Subjt:  QKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQIPP

Query:  CCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQV
        CCRDSN II EVSDQNFVD+HP ELSGG+PIAKRL+K SSDSSGNDQV
Subjt:  CCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQV

TrEMBL top hitse value%identityAlignment
A0A0A0K7Z2 Uncharacterized protein3.0e-9476.4Show/hide
Query:  MGDSHTPSSISPPPPPLPDRRQSLMPPSAA--DSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLS
        MGDSHTPS +S   PPL D RQS MP ++A  DST FNS+S SSSIT+DGS  F  SHH  QLDAE THWTDE+HR YLDSLEASFVQ LHQ R  H LS
Subjt:  MGDSHTPSSISPPPPPLPDRRQSLMPPSAA--DSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLS

Query:  TKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQI
         KQKMRRKPI P+ISSSELM+LQDASWQKANIGRNDPLLD TA SPAILEDLWIN FPSAGKQC LETPDLLEEC SCSDRR IR MTNSC SAR+SQ  
Subjt:  TKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQI

Query:  PPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQV
         PCC +S TII EVSDQNFVDN PGELS G+PIAKRL+KASSD S + QV
Subjt:  PPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQV

A0A1S3BZU8 uncharacterized protein LOC103495241 isoform X11.8e-9979.2Show/hide
Query:  MGDSHTPSSISPPPPPLPDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLS
        MGDSHTPS +S    PL D RQS MPP  S  DST FNS+S SSSITVDGS  FL SHH LQLDAE THWTDE+HRSYLDSLEASFVQGLHQ RR H LS
Subjt:  MGDSHTPSSISPPPPPLPDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLS

Query:  TKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQI
        +KQKMRRKPIM + SSSELM+LQDASWQKANIGRNDPLLD TA SPAILEDLWIN FPSAGKQC LETPDLLEECGSCSDRR IR+MTNSCGSAR+SQQ 
Subjt:  TKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQI

Query:  PPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQV
         PCC +S TII EVSDQNFVDN PGELSGG+P AKRL+KASS    N QV
Subjt:  PPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQV

A0A5D3C4A3 Cold regulated protein 27, putative isoform 26.9e-9979.12Show/hide
Query:  MGDSHTPSSISPPPPPLPDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLS
        MGDSHTPS +S    PL D RQS MPP  S  DST FNS+S SSSITVDGS  FL SHH LQLDAE THWTDE+HRSYLDSLEASFVQGLHQ RR H LS
Subjt:  MGDSHTPSSISPPPPPLPDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLS

Query:  TKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQI
        +KQKMRRKPIM + SSSELM+LQDASWQKANIGRNDPLLD TA SPAILEDLWIN FPSAGKQC LETPDLLEECGSCSDRR IR+MTNSCGSAR+SQQ 
Subjt:  TKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQI

Query:  PPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQ
         PCC +S TII EVSDQNFVDN PGELSGG+P AKRL+KASS    N Q
Subjt:  PPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQ

A0A6J1GKR5 uncharacterized protein LOC111454842 isoform X15.3e-9171.37Show/hide
Query:  MGDSHTPSSISPPPPPLPDRRQSLMPPSAADSTRFNSQSDSSSITVDGSN---PFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTL
        M D+HTPSS+SPP       R+S M  SA+D TR NS+S SSS TVD S    P + SHH  QLDA  THWT+E+HR +LDSLEASFVQ LH+ R    L
Subjt:  MGDSHTPSSISPPPPPLPDRRQSLMPPSAADSTRFNSQSDSSSITVDGSN---PFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTL

Query:  STKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQ
        S+KQKMRRKPIMPNISSSE M+LQDASWQKAN+GR DPLLD TA SPAILED+WIN FPSAG QC LET D+LEECGSCSDR  IRN TNS  SARSSQQ
Subjt:  STKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQ

Query:  IPPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQVNLRI
        IPPCCRDS+TI+ EVSDQNFVD HPGELS G PI KRL+KASSDSSGN++V L I
Subjt:  IPPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQVNLRI

A0A6J1I4M4 uncharacterized protein LOC111470946 isoform X13.1e-9171.21Show/hide
Query:  MGDSHTPSSISPPPPPLPDRRQSLMPPSAADSTRFNSQSDSSSITVDGSN---PFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTL
        M D+HTPSS+SPP       R+S M  SA+D TR NS+S SSS TVD S    P + SHH  QLDA  THWTDE+HR +LD+LEASFVQ LH+ R     
Subjt:  MGDSHTPSSISPPPPPLPDRRQSLMPPSAADSTRFNSQSDSSSITVDGSN---PFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTL

Query:  STKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQ
        S+KQKMRRKPIMPNISSSE M+LQDASWQKANIGR DPLL  TA SPAILED+WIN FPSAG Q   ET D+LEECGSCSDR  IRN TNSC SARSSQQ
Subjt:  STKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQ

Query:  IPPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQVNLRITF
        IPPCCRDS+TI+AEVSDQNFVD HPGELSGG PI KRL+KASSDS GND+V L I F
Subjt:  IPPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQVNLRITF

SwissProt top hitse value%identityAlignment
Q8L8T7 Cold-regulated protein 272.0e-1031.47Show/hide
Query:  STRFNSQSDSSS---ITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQ------RRRRHTLSTKQKMRRKPIMPNISSSELMILQD
        S RF+  SD SS    +V+G      S +S   +   T WT+E+H  YL S+EASFV  L+       +    + ST+    RKP     S  +  +L D
Subjt:  STRFNSQSDSSS---ITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQ------RRRRHTLSTKQKMRRKPIMPNISSSELMILQD

Query:  ASWQKANIGRNDPLLDNTAG--SPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQIPPCCRDSNTII---AEVSDQNF
          WQK N+ + +  ++   G  S   L   WI  +    K  I  T +   +  S S+ ++      S GSA S +Q+    RD + I    AEVSDQNF
Subjt:  ASWQKANIGRNDPLLDNTAG--SPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQIPPCCRDSNTII---AEVSDQNF

Query:  VDNHPGELSGGVPIAKRLRKA-SSDSSGNDQV
        V+     + G    +K+++    S+SS  DQV
Subjt:  VDNHPGELSGGVPIAKRLRKA-SSDSSGNDQV

Q8L983 Cold-regulated protein 282.1e-0433.62Show/hide
Query:  SAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLSTKQKMRRKPIMPNI--SSSELMILQDASW
        S ++ST  NS    S +T + S     S    +LD E T WT+E+H SYLD LE+SFV+ L+         T++  R + +  N   S+ +  +LQ+  W
Subjt:  SAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLSTKQKMRRKPIMPNI--SSSELMILQDASW

Query:  QKANIGRNDPLLDNTA
        QK N G+    L+ ++
Subjt:  QKANIGRNDPLLDNTA

Arabidopsis top hitse value%identityAlignment
AT4G33980.1 BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.2)1.5e-0533.62Show/hide
Query:  SAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLSTKQKMRRKPIMPNI--SSSELMILQDASW
        S ++ST  NS    S +T + S     S    +LD E T WT+E+H SYLD LE+SFV+ L+         T++  R + +  N   S+ +  +LQ+  W
Subjt:  SAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLSTKQKMRRKPIMPNI--SSSELMILQDASW

Query:  QKANIGRNDPLLDNTA
        QK N G+    L+ ++
Subjt:  QKANIGRNDPLLDNTA

AT4G33980.2 FUNCTIONS IN: molecular_function unknown1.5e-0533.62Show/hide
Query:  SAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLSTKQKMRRKPIMPNI--SSSELMILQDASW
        S ++ST  NS    S +T + S     S    +LD E T WT+E+H SYLD LE+SFV+ L+         T++  R + +  N   S+ +  +LQ+  W
Subjt:  SAADSTRFNSQSDSSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLSTKQKMRRKPIMPNI--SSSELMILQDASW

Query:  QKANIGRNDPLLDNTA
        QK N G+    L+ ++
Subjt:  QKANIGRNDPLLDNTA

AT5G42900.1 cold regulated gene 271.4e-1131.47Show/hide
Query:  STRFNSQSDSSS---ITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQ------RRRRHTLSTKQKMRRKPIMPNISSSELMILQD
        S RF+  SD SS    +V+G      S +S   +   T WT+E+H  YL S+EASFV  L+       +    + ST+    RKP     S  +  +L D
Subjt:  STRFNSQSDSSS---ITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQ------RRRRHTLSTKQKMRRKPIMPNISSSELMILQD

Query:  ASWQKANIGRNDPLLDNTAG--SPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQIPPCCRDSNTII---AEVSDQNF
          WQK N+ + +  ++   G  S   L   WI  +    K  I  T +   +  S S+ ++      S GSA S +Q+    RD + I    AEVSDQNF
Subjt:  ASWQKANIGRNDPLLDNTAG--SPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQIPPCCRDSNTII---AEVSDQNF

Query:  VDNHPGELSGGVPIAKRLRKA-SSDSSGNDQV
        V+     + G    +K+++    S+SS  DQV
Subjt:  VDNHPGELSGGVPIAKRLRKA-SSDSSGNDQV

AT5G42900.2 cold regulated gene 271.4e-1131.47Show/hide
Query:  STRFNSQSDSSS---ITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQ------RRRRHTLSTKQKMRRKPIMPNISSSELMILQD
        S RF+  SD SS    +V+G      S +S   +   T WT+E+H  YL S+EASFV  L+       +    + ST+    RKP     S  +  +L D
Subjt:  STRFNSQSDSSS---ITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQ------RRRRHTLSTKQKMRRKPIMPNISSSELMILQD

Query:  ASWQKANIGRNDPLLDNTAG--SPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQIPPCCRDSNTII---AEVSDQNF
          WQK N+ + +  ++   G  S   L   WI  +    K  I  T +   +  S S+ ++      S GSA S +Q+    RD + I    AEVSDQNF
Subjt:  ASWQKANIGRNDPLLDNTAG--SPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQIPPCCRDSNTII---AEVSDQNF

Query:  VDNHPGELSGGVPIAKRLRKA-SSDSSGNDQV
        V+     + G    +K+++    S+SS  DQV
Subjt:  VDNHPGELSGGVPIAKRLRKA-SSDSSGNDQV

AT5G42900.3 cold regulated gene 273.2e-1131.17Show/hide
Query:  STRFNSQSDSSS---ITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQ------RRRRHTLSTKQKMRRKPIMPNISSSELMILQD
        S RF+  SD SS    +V+G      S +S   +   T WT+E+H  YL S+EASFV  L+       +    + ST+    RKP     S  +  +L D
Subjt:  STRFNSQSDSSS---ITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQ------RRRRHTLSTKQKMRRKPIMPNISSSELMILQD

Query:  ASWQKANIGRNDPLLDNTAG--SPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQIPPCCRDSNTIIA--EVSDQNFV
          WQK N+ + +  ++   G  S   L   WI  +    K  I  T +   +  S S+ ++      S GSA S +Q+    RD + I    EVSDQNFV
Subjt:  ASWQKANIGRNDPLLDNTAG--SPAILEDLWINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQIPPCCRDSNTIIA--EVSDQNFV

Query:  DNHPGELSGGVPIAKRLRKA-SSDSSGNDQV
        +     + G    +K+++    S+SS  DQV
Subjt:  DNHPGELSGGVPIAKRLRKA-SSDSSGNDQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGACTCTTTATTTGGGTTTCGCCCCCAAAAAACACCACCATTCACCGGTTCTCTCTCTCTCTTCCTCTTCATTTCTCCACGAGCTTCAATCCCCACAGGGTTTC
GGACCTAAATTTTCTCCCACCATTTCCATTTTCTCTTCCCTTTCATCCTTCTATATTTGGCTCTTTCCAACCATTTCGTCTTCTTTTTCATCCCTCTGTAATGGGTGACT
CTCATACGCCGTCCTCCATCTCGCCGCCACCGCCGCCGCTTCCAGATCGACGACAATCACTCATGCCGCCCTCTGCTGCCGACTCCACTCGCTTCAACTCTCAATCTGAC
TCTTCTTCCATTACTGTTGATGGGTCCAACCCTTTTTTGTATTCTCATCATTCTCTGCAACTCGATGCGGAGCCAACACATTGGACAGATGAGAGACACAGATCATATCT
TGATTCTTTAGAAGCATCTTTTGTCCAAGGTTTGCATCAGCGTAGGCGCAGGCATACTTTGTCTACAAAACAGAAAATGCGTCGGAAGCCAATCATGCCTAATATATCTT
CTTCAGAGTTGATGATCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTTATTGGATAACACTGCCGGTTCTCCTGCTATTTTAGAGGATCTA
TGGATAAATCGTTTTCCTTCTGCAGGAAAGCAATGTATTCTGGAAACTCCTGATCTCCTTGAAGAATGTGGAAGTTGTAGTGATAGGAGACAAATAAGAAACATGACGAA
CTCCTGTGGATCTGCCAGAAGTTCACAGCAGATCCCTCCATGCTGTCGTGATTCTAATACAATCATTGCAGAAGTTTCAGATCAAAACTTTGTGGATAATCATCCAGGAG
AGTTGTCTGGTGGTGTGCCTATTGCGAAAAGATTAAGAAAAGCTTCTTCTGATTCTTCGGGCAATGACCAGGTTAATCTCCGGATTACCTTTTGA
mRNA sequenceShow/hide mRNA sequence
GTAAAAGCGTAGTGCCCATGTGGAGACTCTTTATTTGGGTTTCGCCCCCAAAAAACACCACCATTCACCGGTTCTCTCTCTCTCTTCCTCTTCATTTCTCCACGAGCTTC
AATCCCCACAGGGTTTCGGACCTAAATTTTCTCCCACCATTTCCATTTTCTCTTCCCTTTCATCCTTCTATATTTGGCTCTTTCCAACCATTTCGTCTTCTTTTTCATCC
CTCTGTAATGGGTGACTCTCATACGCCGTCCTCCATCTCGCCGCCACCGCCGCCGCTTCCAGATCGACGACAATCACTCATGCCGCCCTCTGCTGCCGACTCCACTCGCT
TCAACTCTCAATCTGACTCTTCTTCCATTACTGTTGATGGGTCCAACCCTTTTTTGTATTCTCATCATTCTCTGCAACTCGATGCGGAGCCAACACATTGGACAGATGAG
AGACACAGATCATATCTTGATTCTTTAGAAGCATCTTTTGTCCAAGGTTTGCATCAGCGTAGGCGCAGGCATACTTTGTCTACAAAACAGAAAATGCGTCGGAAGCCAAT
CATGCCTAATATATCTTCTTCAGAGTTGATGATCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTTATTGGATAACACTGCCGGTTCTCCTG
CTATTTTAGAGGATCTATGGATAAATCGTTTTCCTTCTGCAGGAAAGCAATGTATTCTGGAAACTCCTGATCTCCTTGAAGAATGTGGAAGTTGTAGTGATAGGAGACAA
ATAAGAAACATGACGAACTCCTGTGGATCTGCCAGAAGTTCACAGCAGATCCCTCCATGCTGTCGTGATTCTAATACAATCATTGCAGAAGTTTCAGATCAAAACTTTGT
GGATAATCATCCAGGAGAGTTGTCTGGTGGTGTGCCTATTGCGAAAAGATTAAGAAAAGCTTCTTCTGATTCTTCGGGCAATGACCAGGTTAATCTCCGGATTACCTTTT
GATTTCACTTTGGAAAACTTATAATTGCATTGTACGAGTGATCTGAGATTGAATATGCTGCTGTTTGATCTCTTAGGTTGTACCATATAAAAGATTATTATCAGAAAGAT
GAAAGCCAGACGCCATATTGTCTTCAGAACATCCTCAAAGTCAAAACTCGTGCCTCCAAATTCAGATTTGTGTTACTGTGTGAGAAGGAGCTGACAACAATTCATTCCAA
CAGGTGAAAATACCTGGCTGTTCAAGCTCGTTAACGAAATGCGACACGGTTCTGTTTCCTTTTTGAAAGAGCATTGTAGAGAAAATAAGGGAAGTGACAGGCAATAATTC
TACCAGAAGATCTGCGGCAGGAAGGAGAAAATATGTTTGTGTATGGTACAAACTAAACTTTTTCATAGTTCAAATATTGAGTGAAATATATGTTAACCGTTTCTTTTCTC
CTGTTTTCTTTTTTCTTAGAGTTTGAAAAGATGGAAAGTCTACTGGATGTAGGGTATAAATATACATGTTATAGAGAAGCTAGACACCCTGATAATGAGATAGATACACA
CCCTTTTTTATTTGTTTGTAATACTCTCATTTTGAAGTTTCAAGTGTAAATCATTACATAAAACAAAGTGTCACTCTTTTGTGACACTGAAGGAGAATTGAACAAACTTA
TTGATTTTCTTTAGGGGGTAAAGCTTTTTCATTGTGTTGTATCCTGGTGTTTTACACAATTATTTGATATTTGTTACTTTTGTTGGTTGAAAA
Protein sequenceShow/hide protein sequence
MWRLFIWVSPPKNTTIHRFSLSLPLHFSTSFNPHRVSDLNFLPPFPFSLPFHPSIFGSFQPFRLLFHPSVMGDSHTPSSISPPPPPLPDRRQSLMPPSAADSTRFNSQSD
SSSITVDGSNPFLYSHHSLQLDAEPTHWTDERHRSYLDSLEASFVQGLHQRRRRHTLSTKQKMRRKPIMPNISSSELMILQDASWQKANIGRNDPLLDNTAGSPAILEDL
WINRFPSAGKQCILETPDLLEECGSCSDRRQIRNMTNSCGSARSSQQIPPCCRDSNTIIAEVSDQNFVDNHPGELSGGVPIAKRLRKASSDSSGNDQVNLRITF