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Lsi03G005500 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G005500
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGRF-type domain-containing protein
Genome locationchr03:6675161..6678701
RNA-Seq ExpressionLsi03G005500
SyntenyLsi03G005500
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645848.1 hypothetical protein Csa_017077 [Cucumis sativus]7.4e-6686.9Show/hide
Query:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE
        MS  EIYEES LECYCGV AKLRMS TEK PFRLFYNCPKEISQQCGFFHWADE EP +DRH NELDLIRNVCIRLTER DE+ EEHEDEK EWEREKAE
Subjt:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE

Query:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDDDDTLV
        LTLKLSTLQTQLDDIHNR+R+TNESFSMPPF+SLSIRDDDDD  V
Subjt:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDDDDTLV

KAF2294607.1 hypothetical protein GH714_013386 [Hevea brasiliensis]1.1e-4257.72Show/hide
Query:  SYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAEL
        S L  +E+S + C CG+PAKLR+SQT +NPFRLFYNCP+  + QCGFF W DEP P  DRH +E++LIRN C RL  R DE+E+ HE++++ WEREK+EL
Subjt:  SYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAEL

Query:  TLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDD-DDTLVIYTL
         LKLST+QT+LD+I  R+R  NES  MPP D+L I DD+ DD + I+T+
Subjt:  TLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDD-DDTLVIYTL

XP_004136954.1 uncharacterized protein LOC101219463 [Cucumis sativus]4.6e-6888Show/hide
Query:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE
        MS  EIYEES LECYCGV AKLRMS TEK PFRLFYNCPKEISQQCGFFHWADE EP +DRH NELDLIRNVCIRLTER DE+ EEHEDEK EWEREKAE
Subjt:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE

Query:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDDDD-TLVIYTL
        LTLKLSTLQTQLDDIHNR+R+TNESFSMPPF+SLSIRDDDDD TLVIYTL
Subjt:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDDDD-TLVIYTL

XP_008455003.1 PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo]4.6e-6886.75Show/hide
Query:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE
        MS  EIYEES LECYCG  AKLRMS TEKNPFRLFYNCPKE+SQQCGFFHWADEPEP DDRH NELDLIRNVCIRLTER DE+ EEHEDEK EWEREKAE
Subjt:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE

Query:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDDD--DTLVIYTL
        LTLKLSTLQTQLDDI+NRIR+TNESFSMPPF+SLSIRDDDD  DTLV+Y L
Subjt:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDDD--DTLVIYTL

XP_022148840.1 uncharacterized protein LOC111017399 [Momordica charantia]4.9e-6279.33Show/hide
Query:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE
        MS  EI+EES LECYCG+PAKLR SQT KNPFRLFYNCPKEISQQCGFFHWADEPEP DDRHV EL+LIRNVC+ L +R DE+EEEH++EKAEWER+K E
Subjt:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE

Query:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDD-DDTLVIYTL
        LTL+L TLQ+QLDDI +RIRM NESFSMPP D+LSIRDD+ DD LVIYTL
Subjt:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDD-DDTLVIYTL

TrEMBL top hitse value%identityAlignment
A0A0A0K2H6 GRF-type domain-containing protein2.2e-6888Show/hide
Query:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE
        MS  EIYEES LECYCGV AKLRMS TEK PFRLFYNCPKEISQQCGFFHWADE EP +DRH NELDLIRNVCIRLTER DE+ EEHEDEK EWEREKAE
Subjt:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE

Query:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDDDD-TLVIYTL
        LTLKLSTLQTQLDDIHNR+R+TNESFSMPPF+SLSIRDDDDD TLVIYTL
Subjt:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDDDD-TLVIYTL

A0A1S4E0B8 uncharacterized protein LOC1034952842.2e-6886.75Show/hide
Query:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE
        MS  EIYEES LECYCG  AKLRMS TEKNPFRLFYNCPKE+SQQCGFFHWADEPEP DDRH NELDLIRNVCIRLTER DE+ EEHEDEK EWEREKAE
Subjt:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE

Query:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDDD--DTLVIYTL
        LTLKLSTLQTQLDDI+NRIR+TNESFSMPPF+SLSIRDDDD  DTLV+Y L
Subjt:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDDD--DTLVIYTL

A0A5A7SJM5 GRF-type domain-containing protein2.2e-6886.75Show/hide
Query:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE
        MS  EIYEES LECYCG  AKLRMS TEKNPFRLFYNCPKE+SQQCGFFHWADEPEP DDRH NELDLIRNVCIRLTER DE+ EEHEDEK EWEREKAE
Subjt:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE

Query:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDDD--DTLVIYTL
        LTLKLSTLQTQLDDI+NRIR+TNESFSMPPF+SLSIRDDDD  DTLV+Y L
Subjt:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDDD--DTLVIYTL

A0A6A6L2I8 GRF-type domain-containing protein5.5e-4357.72Show/hide
Query:  SYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAEL
        S L  +E+S + C CG+PAKLR+SQT +NPFRLFYNCP+  + QCGFF W DEP P  DRH +E++LIRN C RL  R DE+E+ HE++++ WEREK+EL
Subjt:  SYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAEL

Query:  TLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDD-DDTLVIYTL
         LKLST+QT+LD+I  R+R  NES  MPP D+L I DD+ DD + I+T+
Subjt:  TLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDD-DDTLVIYTL

A0A6J1D427 uncharacterized protein LOC1110173992.4e-6279.33Show/hide
Query:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE
        MS  EI+EES LECYCG+PAKLR SQT KNPFRLFYNCPKEISQQCGFFHWADEPEP DDRHV EL+LIRNVC+ L +R DE+EEEH++EKAEWER+K E
Subjt:  MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAE

Query:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDD-DDTLVIYTL
        LTL+L TLQ+QLDDI +RIRM NESFSMPP D+LSIRDD+ DD LVIYTL
Subjt:  LTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDD-DDTLVIYTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54930.1 GRF zinc finger / Zinc knuckle protein2.9e-0442.22Show/hide
Query:  NLECYCGV-PAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADE
        ++ C C   P     S+TEKNP R FY CP      CG+F W D+
Subjt:  NLECYCGV-PAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADE

AT3G42860.1 zinc knuckle (CCHC-type) family protein1.3e-0452.38Show/hide
Query:  CYCGVPAKLRM-SQTEKNPFRLFYNCP-KEISQQCGFFHWAD
        C CGV   L + S T KNP R FY CP +E +  CGFF W D
Subjt:  CYCGVPAKLRM-SQTEKNPFRLFYNCP-KEISQQCGFFHWAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTATTTGGAAATTTATGAGGAATCTAATCTAGAATGTTACTGTGGAGTACCTGCAAAACTAAGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTCTACAA
CTGTCCAAAGGAGATATCTCAACAATGTGGTTTCTTTCATTGGGCTGATGAACCCGAACCATGCGATGATAGACACGTCAATGAACTAGACTTGATCCGCAACGTGTGTA
TTCGTCTAACAGAAAGATTTGACGAAATGGAAGAGGAACATGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTGAAACTATCAACTCTGCAGACT
CAGCTTGATGATATTCATAATAGAATAAGGATGACGAATGAATCGTTTTCAATGCCTCCTTTTGATTCACTTTCTATTAGGGACGACGACGACGACACGTTAGTTATATA
TACTTTGTAA
mRNA sequenceShow/hide mRNA sequence
GGATAAGATTAGTCACTGTCAGGAGAAAAAACACTCCAAAACAAAGAAGATTCCGATCATCTTAGAAACTGCTTTTGGTTTGGCCCCCACACGATAAGCTTCAAACTCCT
CGATCTCTTCATTTACAGAACAATCGTCATTGCTTGTATCAATGCGACGACGATCTTCCTTTGCTGCTTCAATCGGTTGCTCCAGTTTACCAACCACGCTCTTTTAGGAT
CCATACTTAAACAATGTCTTATTTGGAAATTTATGAGGAATCTAATCTAGAATGTTACTGTGGAGTACCTGCAAAACTAAGAATGTCTCAGACAGAAAAAAATCCATTCA
GGCTATTCTACAACTGTCCAAAGGAGATATCTCAACAATGTGGTTTCTTTCATTGGGCTGATGAACCCGAACCATGCGATGATAGACACGTCAATGAACTAGACTTGATC
CGCAACGTGTGTATTCGTCTAACAGAAAGATTTGACGAAATGGAAGAGGAACATGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTGAAACTATC
AACTCTGCAGACTCAGCTTGATGATATTCATAATAGAATAAGGATGACGAATGAATCGTTTTCAATGCCTCCTTTTGATTCACTTTCTATTAGGGACGACGACGACGACA
CGTTAGTTATATATACTTTGTAAATTATGTTGAGTGAAGTGAGAGAATCATGTAGCTATCTATTTTCGGTACGTGTTTGAGCTTTTGTTTAAAAGTTGTGTGCTCCATTC
ATTTTCTGCTTAGTTTGATACCTAGATGCCCCTAAAAATGCCACTGTTCGATAGCTAAGAGTCTAAGACAGCAGGGGAGGACAAAAGTATAGCTAGTCGACTTCGTTTGG
TAACTATTTTGTTGCTTGTTTCGGAAGAAAAATGAGAACATGATGGAAGTTCTATATGAAAATGCTTTTTTTTCTTCACTTA
Protein sequenceShow/hide protein sequence
MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAELTLKLSTLQT
QLDDIHNRIRMTNESFSMPPFDSLSIRDDDDDTLVIYTL