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Lsi03G005560 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G005560
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPUM-HD domain-containing protein
Genome locationchr03:6731978..6732800
RNA-Seq ExpressionLsi03G005560
SyntenyLsi03G005560
Gene Ontology termsNA
InterPro domainsIPR011989 - Armadillo-like helical
IPR016024 - Armadillo-type fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645845.1 hypothetical protein Csa_017253 [Cucumis sativus]1.3e-2654.96Show/hide
Query:  NYVIQFMIQLDGANIGWMIINELETNF----------NVVEKCMSCCEGGSDYIIFEILENNNQDQLFQVCTNQY-------------GEAYRLLERAIK
        NYVIQFMIQLDG NIG  II EL   F          NVVEKC+SCCEG S+ IIFEILE N +D+L Q+CTNQY             G+  +LLE+AIK
Subjt:  NYVIQFMIQLDGANIGWMIINELETNF----------NVVEKCMSCCEGGSDYIIFEILENNNQDQLFQVCTNQY-------------GEAYRLLERAIK

Query:  NHWLDLQTHPYKRNVISSIKHDKKSQNYKSF
        +HWL LQ H Y RNVISSI+ DKK      +
Subjt:  NHWLDLQTHPYKRNVISSIKHDKKSQNYKSF
XP_022148742.1 pumilio homolog 12-like [Momordica charantia]8.9e-1242.06Show/hide
Query:  NYVIQFMIQLDGANIGWMIINELETNF----------NVVEKCMSCCEGGSDYIIFEILENNNQDQLFQVCTNQY-------------GEAYRLLERAIK
        N+VIQF+I+LD ANIG  +I  L   F          +VVEKC+ C E  +  IIFEI+E  N++   QV TNQY             GEAY LL RAIK
Subjt:  NYVIQFMIQLDGANIGWMIINELETNF----------NVVEKCMSCCEGGSDYIIFEILENNNQDQLFQVCTNQY-------------GEAYRLLERAIK

Query:  NHWLDLQTHPYKRNVI-SSIKHDKKS
        +    L+ HPY R+V+ +++K  ++S
Subjt:  NHWLDLQTHPYKRNVI-SSIKHDKKS
TrEMBL top hitse value%identityAlignment
A0A0A0K7S4 PUM-HD domain-containing protein6.2e-2754.96Show/hide
Query:  NYVIQFMIQLDGANIGWMIINELETNF----------NVVEKCMSCCEGGSDYIIFEILENNNQDQLFQVCTNQY-------------GEAYRLLERAIK
        NYVIQFMIQLDG NIG  II EL   F          NVVEKC+SCCEG S+ IIFEILE N +D+L Q+CTNQY             G+  +LLE+AIK
Subjt:  NYVIQFMIQLDGANIGWMIINELETNF----------NVVEKCMSCCEGGSDYIIFEILENNNQDQLFQVCTNQY-------------GEAYRLLERAIK

Query:  NHWLDLQTHPYKRNVISSIKHDKKSQNYKSF
        +HWL LQ H Y RNVISSI+ DKK      +
Subjt:  NHWLDLQTHPYKRNVISSIKHDKKSQNYKSF
A0A6J1D5W5 pumilio homolog 12-like4.3e-1242.06Show/hide
Query:  NYVIQFMIQLDGANIGWMIINELETNF----------NVVEKCMSCCEGGSDYIIFEILENNNQDQLFQVCTNQY-------------GEAYRLLERAIK
        N+VIQF+I+LD ANIG  +I  L   F          +VVEKC+ C E  +  IIFEI+E  N++   QV TNQY             GEAY LL RAIK
Subjt:  NYVIQFMIQLDGANIGWMIINELETNF----------NVVEKCMSCCEGGSDYIIFEILENNNQDQLFQVCTNQY-------------GEAYRLLERAIK

Query:  NHWLDLQTHPYKRNVI-SSIKHDKKS
        +    L+ HPY R+V+ +++K  ++S
Subjt:  NHWLDLQTHPYKRNVI-SSIKHDKKS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGACGACATCAAGAAGTTCTAATCTCTCGGTTGATACAAGATGCATACAATCTCTCAATGCATCCCTCTACGGGCAATTTTCATTTTATTATGCATATATTATTAT
AAGCTTGAACTATGTAATACAATTTATGATTCAATTGGATGGAGCAAATATAGGATGGATGATAATCAATGAGCTTGAAACAAATTTCAATGTGGTGGAAAAATGCATGT
CTTGTTGTGAAGGTGGTTCTGATTACATTATCTTTGAAATTTTAGAGAATAATAATCAAGATCAACTCTTTCAAGTTTGTACAAACCAATATGGAGAAGCTTATAGGTTA
CTTGAAAGAGCCATTAAGAATCATTGGCTTGATCTTCAAACTCATCCGTACAAAAGAAATGTGATTTCATCAATCAAACATGATAAAAAGAGTCAAAATTACAAGAGTTT
TAAATTAAAATTGGTTGTTTGGGATATGGAGCAAACAAACCGCATTAGGAACATTAGGAAC
mRNA sequenceShow/hide mRNA sequence
ATGAGGACGACATCAAGAAGTTCTAATCTCTCGGTTGATACAAGATGCATACAATCTCTCAATGCATCCCTCTACGGGCAATTTTCATTTTATTATGCATATATTATTAT
AAGCTTGAACTATGTAATACAATTTATGATTCAATTGGATGGAGCAAATATAGGATGGATGATAATCAATGAGCTTGAAACAAATTTCAATGTGGTGGAAAAATGCATGT
CTTGTTGTGAAGGTGGTTCTGATTACATTATCTTTGAAATTTTAGAGAATAATAATCAAGATCAACTCTTTCAAGTTTGTACAAACCAATATGGAGAAGCTTATAGGTTA
CTTGAAAGAGCCATTAAGAATCATTGGCTTGATCTTCAAACTCATCCGTACAAAAGAAATGTGATTTCATCAATCAAACATGATAAAAAGAGTCAAAATTACAAGAGTTT
TAAATTAAAATTGGTTGTTTGGGATATGGAGCAAACAAACCGCATTAGGAACATTAGGAAC
Protein sequenceShow/hide protein sequence
MRTTSRSSNLSVDTRCIQSLNASLYGQFSFYYAYIIISLNYVIQFMIQLDGANIGWMIINELETNFNVVEKCMSCCEGGSDYIIFEILENNNQDQLFQVCTNQYGEAYRL
LERAIKNHWLDLQTHPYKRNVISSIKHDKKSQNYKSFKLKLVVWDMEQTNRIRNIRN