; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G005570 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G005570
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionpumilio homolog 12-like
Genome locationchr03:6736682..6737084
RNA-Seq ExpressionLsi03G005570
SyntenyLsi03G005570
Gene Ontology termsGO:0006417 - regulation of translation (biological process)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR011989 - Armadillo-like helical
IPR016024 - Armadillo-type fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645845.1 hypothetical protein Csa_017253 [Cucumis sativus]2.2e-2659.79Show/hide
Query:  YRVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI
        +R+VV LIS L+YPCQ+W I L + PHVLTLAK+F  GH+V++SCFQ+    +NELI+LR+ QNC  LAR +  CCILQ CIEYS NN+ + QE+LI
Subjt:  YRVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI

KAF5444323.1 hypothetical protein F2P56_036809 [Juglans regia]5.1e-0740.48Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS
        R V KL+  L+ P Q +     +    LTLAK+   G  V+R CFQ      NE IL  I +NC  +A DK GCC++Q C+ Y+
Subjt:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS

XP_008455521.1 PREDICTED: putative pumilio homolog 8, chloroplastic [Cucumis melo]4.3e-3068.04Show/hide
Query:  YRVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI
        YRVVV LIS L+YPCQ+W IAL +SPHVLTLAK+FQGGH+V++SCFQS     NELILLR+ QNC  LAR++ GCCILQ CIEYS NN  + +E+LI
Subjt:  YRVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI

XP_018852099.2 pumilio homolog 15-like [Juglans regia]5.1e-0740.48Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS
        R V KL+  L+ P Q +     +    LTLAK+   G  V+R CFQ      NE IL  I +NC  +A DK GCC++Q C+ Y+
Subjt:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS

XP_022148742.1 pumilio homolog 12-like [Momordica charantia]1.7e-1047.62Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS
        + VVKL+ RL  P  +   A+ IS H + LAK+   GH VL +CF++L    NE+ILL I  N   LA+DK GCCIL  CI Y+
Subjt:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS

TrEMBL top hitse value%identityAlignment
A0A1S3C139 putative pumilio homolog 8, chloroplastic2.1e-3068.04Show/hide
Query:  YRVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI
        YRVVV LIS L+YPCQ+W IAL +SPHVLTLAK+FQGGH+V++SCFQS     NELILLR+ QNC  LAR++ GCCILQ CIEYS NN  + +E+LI
Subjt:  YRVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI

A0A2I4H7G6 pumilio homolog 15-like2.5e-0740.48Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS
        R V KL+  L+ P Q +     +    LTLAK+   G  V+R CFQ      NE IL  I +NC  +A DK GCC++Q C+ Y+
Subjt:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS

A0A314YLD4 Pumilio homolog 123.2e-0736.46Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI
        R V KL+  +    Q   I   +SP V+ L+KN  G H V+  C +   +  NE +L  +  NC  +A+DK GCC+LQ C+E+S    G+++E L+
Subjt:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI

A0A6J1D5W5 pumilio homolog 12-like8.2e-1147.62Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS
        + VVKL+ RL  P  +   A+ IS H + LAK+   GH VL +CF++L    NE+ILL I  N   LA+DK GCCIL  CI Y+
Subjt:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS

A0A6P3YS61 pumilio homolog 12-like3.2e-0738.1Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS
        RVV KL+  L+ P Q++     +S   + L K+  G H V++ CF  L    N+ +L  +  NC  +A DK GCCILQ+C+ Y+
Subjt:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS

SwissProt top hitse value%identityAlignment
Q1PFN9 Pumilio homolog 94.8e-0834.38Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI
        RVV K+I  ++   Q   +   + P  L L K+  G H V++SC Q+L    NE +L    + C+ +A  + GCC+LQ CI    N++G  +E L+
Subjt:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI

Q9C9R6 Putative pumilio homolog 7, chloroplastic1.8e-0735.71Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS
        RVV +L+  +R   Q   + L + P  L L K+  G H V++ C Q L    N+ I     + C+ +A  + GCC+LQ CI YS
Subjt:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS

Q9LDW3 Pumilio homolog 112.9e-0531.25Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI
        RVV KLI  +    Q   +   + P  L+L +   G H +L +C +      N+ IL    + C  +A  + GCC+LQ C+ YS   +G   E L+
Subjt:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI

Q9LM20 Putative pumilio homolog 8, chloroplastic2.0e-0633.33Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS
        RVV +L+  ++   Q   +   + P  L L ++  G H V++ C Q L    NE I     + C ++A  + GCC+LQ CI YS
Subjt:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS

Q9LVC3 Pumilio homolog 121.3e-0530.43Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPH-VLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRH
        R V K++   +   +E +I +    H ++ L KN  G H V++ C Q L     + +    + +C  LA D+ GCC+LQ C+ YS     +H
Subjt:  RVVVKLISRLRYPCQEWTIALEISPH-VLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRH

Arabidopsis top hitse value%identityAlignment
AT1G22240.1 pumilio 81.4e-0733.33Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS
        RVV +L+  ++   Q   +   + P  L L ++  G H V++ C Q L    NE I     + C ++A  + GCC+LQ CI YS
Subjt:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS

AT1G35730.1 pumilio 93.4e-0934.38Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI
        RVV K+I  ++   Q   +   + P  L L K+  G H V++SC Q+L    NE +L    + C+ +A  + GCC+LQ CI    N++G  +E L+
Subjt:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI

AT1G78160.1 pumilio 71.3e-0835.71Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS
        RVV +L+  +R   Q   + L + P  L L K+  G H V++ C Q L    N+ I     + C+ +A  + GCC+LQ CI YS
Subjt:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYS

AT4G08840.1 pumilio 112.1e-0631.25Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI
        RVV KLI  +    Q   +   + P  L+L +   G H +L +C +      N+ IL    + C  +A  + GCC+LQ C+ YS   +G   E L+
Subjt:  RVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILI

AT5G56510.1 pumilio 129.2e-0730.43Show/hide
Query:  RVVVKLISRLRYPCQEWTIALEISPH-VLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRH
        R V K++   +   +E +I +    H ++ L KN  G H V++ C Q L     + +    + +C  LA D+ GCC+LQ C+ YS     +H
Subjt:  RVVVKLISRLRYPCQEWTIALEISPH-VLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATCGAGTTGTGGTGAAATTAATCTCTCGTTTGAGATATCCTTGTCAAGAATGGACGATTGCATTAGAGATAAGTCCTCATGTCTTGACTTTGGCTAAAAATTTCCAAGG
TGGCCATCAAGTGCTAAGGAGTTGTTTCCAAAGTCTTTTTCTACTGACTAATGAGTTGATCCTGCTTAGAATAGTACAAAATTGTTCAAACCTAGCGAGAGATAAAGAGG
GTTGTTGTATACTTCAATCGTGCATTGAATATTCCTATAATAATATAGGACGACATCAAGAAATTCTAATCTTATAG
mRNA sequenceShow/hide mRNA sequence
TATCGAGTTGTGGTGAAATTAATCTCTCGTTTGAGATATCCTTGTCAAGAATGGACGATTGCATTAGAGATAAGTCCTCATGTCTTGACTTTGGCTAAAAATTTCCAAGG
TGGCCATCAAGTGCTAAGGAGTTGTTTCCAAAGTCTTTTTCTACTGACTAATGAGTTGATCCTGCTTAGAATAGTACAAAATTGTTCAAACCTAGCGAGAGATAAAGAGG
GTTGTTGTATACTTCAATCGTGCATTGAATATTCCTATAATAATATAGGACGACATCAAGAAATTCTAATCTTATAG
Protein sequenceShow/hide protein sequence
YRVVVKLISRLRYPCQEWTIALEISPHVLTLAKNFQGGHQVLRSCFQSLFLLTNELILLRIVQNCSNLARDKEGCCILQSCIEYSYNNIGRHQEILIL