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Lsi03G005590 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G005590
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGibberellin-regulated family protein
Genome locationchr03:6743934..6745226
RNA-Seq ExpressionLsi03G005590
SyntenyLsi03G005590
Gene Ontology termsNA
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044354.1 peamaclein-like [Cucumis melo var. makuwa]2.0e-1451.11Show/hide
Query:  CFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP
        CFLL ++SF+DT  A  V             C + C+KRCS+A +K RCMKYC ICC  CKCVP G YG KH CPCY  + + +GR KCP
Subjt:  CFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP

KAG6588701.1 Snakin-1, partial [Cucurbita argyrosperma subsp. sororia]2.5e-2572.15Show/hide
Query:  MDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGGYGKHHCPCYSHVHTLRGRTKCP
        M+TAMA +            DVCTRPCRKRCS AKLKR+CMK+CRICC KCKCVPG YGK HCPCYSHVHTLRGR KCP
Subjt:  MDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGGYGKHHCPCYSHVHTLRGRTKCP

KAG7022485.1 Snakin-1 [Cucurbita argyrosperma subsp. argyrosperma]1.4e-3373Show/hide
Query:  MRTQILVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGGYGKHHCPCYSHVHTLRGRTKCP
        MR QIL++G F CFLLLSASFM+TAMA +            DVCTRPCRKRCS AKLKR+CMK+CRICC KCKCVPG YGK HCPCYSHVHTLRGR KCP
Subjt:  MRTQILVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGGYGKHHCPCYSHVHTLRGRTKCP

XP_021683427.1 snakin-1-like [Hevea brasiliensis]9.8e-1449.46Show/hide
Query:  LFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP
        L  C LLLS+SF++ AMA S              CT+ C+ RC+KA +K RC+KYC ICC++CKCVP G YG KH CPCY      +G+ KCP
Subjt:  LFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP

XP_031379474.1 peamaclein-like [Punica granatum]9.8e-1446.39Show/hide
Query:  LVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP
        L+  +  C  LLS++FM+  MA SV             CT+ C +RC KA +K RC+KYC ICC++CKCVP G YG KH CPCY      +G+ KCP
Subjt:  LVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP

TrEMBL top hitse value%identityAlignment
A0A0A0K2Z1 Uncharacterized protein1.6e-3881Show/hide
Query:  MRTQILVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGGYGKHHCPCYSHVHTLRGRTKCP
        MRT +L+LGLFFCFLLLSASFMDTAMADS            D CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGGYGK HCPCYSHVHT+RGR KCP
Subjt:  MRTQILVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGGYGKHHCPCYSHVHTLRGRTKCP

A0A1J6IQA3 Snakin-18.1e-1450Show/hide
Query:  LLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP
        LLL++SF++TA A SV             C   C+ RCSKA +K RC+KYC +CC+KCKCVP G YG KH CPCY  +   +G+ KCP
Subjt:  LLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP

A0A1S4CE27 peamaclein-like8.1e-1447.47Show/hide
Query:  QILVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GGYG-KHHCPCYSHVHTLRGRTKCP
        +I V  +    LLL++SF++TA A SV             C R C+ RCSKA +K RC+KYC +CC+KCKCVP G YG KH CPCY  +   +G+ KCP
Subjt:  QILVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GGYG-KHHCPCYSHVHTLRGRTKCP

A0A2I0KSA4 peamaclein-like4.7e-1446.39Show/hide
Query:  LVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP
        L+  +  C  LLS++FM+  MA SV             CT+ C +RC KA +K RC+KYC ICC++CKCVP G YG KH CPCY      +G+ KCP
Subjt:  LVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP

A0A5D3E0A6 Peamaclein-like9.5e-1551.11Show/hide
Query:  CFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP
        CFLL ++SF+DT  A  V             C + C+KRCS+A +K RCMKYC ICC  CKCVP G YG KH CPCY  + + +GR KCP
Subjt:  CFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP

SwissProt top hitse value%identityAlignment
C0HLQ1 Cypmaclein4.7e-1152.54Show/hide
Query:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGGYG-KHHCPCYSHVHTLRGRTKCP
        C + C +RCSKA    RC+KYC ICC KC CV PG YG +  CPCY+++   +G  KCP
Subjt:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGGYG-KHHCPCYSHVHTLRGRTKCP

C0HLQ2 Cypmaclein1.8e-1049.15Show/hide
Query:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGGYGKHH--CPCYSHVHTLRGRTKCP
        C + C +RCSKA    RC+KYC ICC KC CVP G   +   CPCY+++   +G  KCP
Subjt:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGGYGKHH--CPCYSHVHTLRGRTKCP

O80641 Gibberellin-regulated protein 81.4e-1040.4Show/hide
Query:  QILVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP
        +++V+  F   LLL++SF   + ADS              C   C  RCSKA     C+KYC ICC KC CVP G +G K  CPCY  +   +G +KCP
Subjt:  QILVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP

P86888 Peamaclein8.0e-1154.24Show/hide
Query:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP
        C   C  RCSKA  + RC+KYC ICC KC CVP G YG K  CPCY  +   +G  KCP
Subjt:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP

Q948Z4 Snakin-13.9e-1342.42Show/hide
Query:  QILVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP
        ++ +L L    L+++ S + T MA S              C   C+ RCSKA L  RC+KYC ICC +CKCVP G YG KH CPCY      +G++KCP
Subjt:  QILVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP

Arabidopsis top hitse value%identityAlignment
AT2G14900.1 Gibberellin-regulated family protein2.8e-1150Show/hide
Query:  EDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP
        E  C + C  RC +A +K RC+KYC ICC  C+CVP G YG KH C CY    + +G  KCP
Subjt:  EDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP

AT2G39540.1 Gibberellin-regulated family protein9.7e-1240.4Show/hide
Query:  QILVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP
        +++V+  F   LLL++SF   + ADS              C   C  RCSKA     C+KYC ICC KC CVP G +G K  CPCY  +   +G +KCP
Subjt:  QILVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGG-YG-KHHCPCYSHVHTLRGRTKCP

AT4G09600.1 GAST1 protein homolog 31.2e-0947.46Show/hide
Query:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGGYGKHH-CPCYSHVHTLRGRTKCP
        C   C+ RCSK+     C++ C  CC +C CV PG  G HH CPCY+ + T  GR KCP
Subjt:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGGYGKHH-CPCYSHVHTLRGRTKCP

AT4G09610.1 GAST1 protein homolog 29.1e-1045.76Show/hide
Query:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGGY--GKHHCPCYSHVHTLRGRTKCP
        C   C+ RCSK+   + C++ C  CCS+C CVP G     H CPCY+ + T  GR KCP
Subjt:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGGY--GKHHCPCYSHVHTLRGRTKCP

AT5G59845.1 Gibberellin-regulated family protein1.4e-1042.7Show/hide
Query:  LLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCK-CVPGG-YG-KHHCPCYSHVHTLRGRTKCP
        LL+++S    + ADS              C   C  RCSKA  + RC+KYC ICC KC  CVP G YG K  CPCY  +   +G +KCP
Subjt:  LLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCK-CVPGG-YG-KHHCPCYSHVHTLRGRTKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAACTCAGATTTTGGTTCTTGGTTTGTTCTTCTGTTTTCTTCTCTTAAGTGCTTCTTTCATGGACACCGCCATGGCCGACTCTGTGATGATATGTGGAATGTGTTT
GGGGTCGAGGGAAGATGTGTGCACAAGACCGTGCAGAAAGAGGTGCTCGAAAGCGAAGCTGAAGCGTCGGTGCATGAAGTATTGCAGAATATGTTGTAGTAAATGCAAGT
GTGTGCCAGGGGGTTATGGCAAGCACCATTGCCCTTGCTATAGCCATGTTCACACCCTTAGGGGTAGGACCAAGTGCCCTTAA
mRNA sequenceShow/hide mRNA sequence
GAGTTGAGTTATAGAATTCTCCAACACTCTCTGTGTTTCTTGTTTAAAAGCACTAACTTACTCTGCAAACTCCTTTGTGCTCTGTTGAGAAATAAATCTGATATTTCATT
TCTCTAATCTGAAAGATCAAAGATGAGAACTCAGATTTTGGTTCTTGGTTTGTTCTTCTGTTTTCTTCTCTTAAGTGCTTCTTTCATGGACACCGCCATGGCCGACTCTG
TGATGATATGTGGAATGTGTTTGGGGTCGAGGGAAGATGTGTGCACAAGACCGTGCAGAAAGAGGTGCTCGAAAGCGAAGCTGAAGCGTCGGTGCATGAAGTATTGCAGA
ATATGTTGTAGTAAATGCAAGTGTGTGCCAGGGGGTTATGGCAAGCACCATTGCCCTTGCTATAGCCATGTTCACACCCTTAGGGGTAGGACCAAGTGCCCTTAA
Protein sequenceShow/hide protein sequence
MRTQILVLGLFFCFLLLSASFMDTAMADSVMICGMCLGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGGYGKHHCPCYSHVHTLRGRTKCP