; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G005610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G005610
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSWIB domain-containing protein
Genome locationchr03:6787698..6788097
RNA-Seq ExpressionLsi03G005610
SyntenyLsi03G005610
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571933.1 hypothetical protein SDJN03_28661, partial [Cucurbita argyrosperma subsp. sororia]1.9e-3987Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGEPSLLVA+AS + SSVK+PYQL LPNLRF+RT+TFASASNQ TAS RQPRGIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

XP_022952608.1 uncharacterized protein LOC111455244 [Cucurbita moschata]1.9e-3987Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGEPSLLVA+AS + SSVK+PYQL LPNLRF+RT+TFASASNQ TAS RQPRGIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

XP_022972543.1 uncharacterized protein LOC111471082 [Cucurbita maxima]3.2e-3988Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGE SLL+A+AS + SSVK+PYQL LPNLRF+RT+TFASASNQATAS RQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

XP_023553864.1 uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo]8.5e-4088Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGEPSLLVA+AS + SSVK+PYQL LPNLRF+RT+TFASASNQ TAS RQPRGIMKPRRISPEMQALVGAPEISRTQALKVIW HIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

XP_038888173.1 uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida]5.0e-4091Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAF+STFISGEPSLLV KAS   +SVK PYQL LPNLRFARTVTFASASNQATAS RQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

TrEMBL top hitse value%identityAlignment
A0A6J1D4Q4 uncharacterized protein LOC1110172912.0e-3179Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF SGEP+LLVA+AS   SS+K+  QL   NLRF R VTFA+AS+QATASRR+PRGIMKPR ISPEMQALVG PEISRTQALKVIW HIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

A0A6J1EIX1 uncharacterized protein LOC1114346994.0e-3583Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTFISGE SLL  +AS   SSVK+PYQ    NL FARTVTFAS SNQATAS+RQPRGIMKP+RISPEMQALVG PEISRTQALKVIWAHIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

A0A6J1GL33 uncharacterized protein LOC1114552449.2e-4087Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGEPSLLVA+AS + SSVK+PYQL LPNLRF+RT+TFASASNQ TAS RQPRGIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

A0A6J1IAA1 uncharacterized protein LOC1114710821.6e-3988Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGE SLL+A+AS + SSVK+PYQL LPNLRF+RT+TFASASNQATAS RQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

A0A6J1JNZ3 uncharacterized protein LOC1114861972.3e-3583Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTFISGE SLL  +AS  +SSVK+PYQ    NL FARTVTFAS SNQATAS+RQPRGIMKP+RISPEMQALVG PEISRTQALKVIWAHIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49520.1 SWIB complex BAF60b domain-containing protein8.5e-0642.22Show/hide
Query:  RRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        +++  G  K   +SPE+QA  G P+++RT+ +K++W +IKE+NLQ
Subjt:  RRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

AT2G14880.1 SWIB/MDM2 domain superfamily protein1.2e-1555.06Show/hide
Query:  TSSVKNPYQLSLPNLRFA----------RTVTFASASNQATA-SRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        T+S +NP    L +LRFA          R VT A+ S++ TA ++R PRGIMKPR +SPEMQ +V  PEI+RTQALK IWA+IKEH+LQ
Subjt:  TSSVKNPYQLSLPNLRFA----------RTVTFASASNQATA-SRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

AT3G19080.1 SWIB complex BAF60b domain-containing protein3.2e-0544.44Show/hide
Query:  RRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        R+   G  K   +SPE+QA  G  E++RT+ +K++W +IKE+NLQ
Subjt:  RRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

AT4G22360.1 SWIB complex BAF60b domain-containing protein2.5e-0539.58Show/hide
Query:  TASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        T  +  P G+ K  R+SPE++ +VG P + RT+ ++ +WA+I+++NLQ
Subjt:  TASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

AT4G34290.1 SWIB/MDM2 domain superfamily protein4.1e-1650Show/hide
Query:  SLLVAKASPITSSVKNPYQLSL-----PNLRFARTVTFASASNQ---ATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        + L    +P+ SS+ +P  L L      NLR  R VT A+A++     T   R+PRGIMKPR +S  MQ +VG PEI RTQALK IWA+IKEH+LQ
Subjt:  SLLVAKASPITSSVKNPYQLSL-----PNLRFARTVTFASASNQ---ATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCGTCTCCACCTTCATCTCCGGCGAACCGTCGCTCCTCGTCGCCAAAGCCTCCCCCATCACCTCCTCCGTCAAGAATCCTTATCAACTCTCTCTGCCTAATTT
GCGTTTCGCCCGCACCGTTACCTTCGCTTCCGCCTCCAACCAAGCCACTGCCTCCCGCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGAATTTCACCGGAGATGCAGG
CGCTTGTTGGCGCTCCTGAGATTTCCCGTACCCAAGCCCTTAAGGTCATTTGGGCTCACATTAAAGAGCATAATCTTCAGTCATACTATTTAATTAGAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTCGTCTCCACCTTCATCTCCGGCGAACCGTCGCTCCTCGTCGCCAAAGCCTCCCCCATCACCTCCTCCGTCAAGAATCCTTATCAACTCTCTCTGCCTAATTT
GCGTTTCGCCCGCACCGTTACCTTCGCTTCCGCCTCCAACCAAGCCACTGCCTCCCGCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGAATTTCACCGGAGATGCAGG
CGCTTGTTGGCGCTCCTGAGATTTCCCGTACCCAAGCCCTTAAGGTCATTTGGGCTCACATTAAAGAGCATAATCTTCAGTCATACTATTTAATTAGAGAATAG
Protein sequenceShow/hide protein sequence
MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQSYYLIRE