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Lsi03G005680 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G005680
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description40S ribosomal protein S29
Genome locationchr03:6850054..6851282
RNA-Seq ExpressionLsi03G005680
SyntenyLsi03G005680
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR043140 - Ribosomal protein S14/S29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EAZ20624.1 hypothetical protein OsJ_36239 [Oryza sativa Japonica Group]4.9e-1353.95Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCWTQSK-----------------EPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
        MGHSNVWNSHPKNYGPGSR C+  S                   PG+R+ SW DQ+V  +VLQTVLPQQ QG+ +H
Subjt:  MGHSNVWNSHPKNYGPGSRTCWTQSK-----------------EPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
KAG6417466.1 hypothetical protein SASPL_119646 [Salvia splendens]3.4e-0672.73Show/hide
Query:  EPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
        +P +RKSSW +QKVW  VLQTVLPQQC+GNW+H
Subjt:  EPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
KAG6417468.1 hypothetical protein SASPL_119648 [Salvia splendens]3.4e-0672.73Show/hide
Query:  EPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
        +P +RKSSW +QKVW  VLQTVLPQQC+GNW+H
Subjt:  EPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
KHN30432.1 hypothetical protein glysoja_033170 [Glycine soja]2.5e-1767.21Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCWTQ--SKEPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
        MGHSNVWNSHPKNYGPGSRT +     + P + +SSW+DQ++W YVLQ VLP+QCQGNW+H
Subjt:  MGHSNVWNSHPKNYGPGSRTCWTQ--SKEPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
VFQ81205.1 unnamed protein product [Cuscuta campestris]6.8e-0747.46Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
        MGHSN+WN+HPKNYGPGSR C        + +        +  +   V PQQCQG+WIH
Subjt:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
TrEMBL top hitse value%identityAlignment
A0A0B2RF08 Uncharacterized protein1.2e-1767.21Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCWTQ--SKEPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
        MGHSNVWNSHPKNYGPGSRT +     + P + +SSW+DQ++W YVLQ VLP+QCQGNW+H
Subjt:  MGHSNVWNSHPKNYGPGSRTCWTQ--SKEPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
A0A0E0JAX2 Uncharacterized protein1.4e-1353.95Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCWTQSK-----------------EPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
        MGHSNVWNSHPKNYGPGSR C+  S+                  PG+R+ SW DQ+V  +VLQTVLPQQ QG+ +H
Subjt:  MGHSNVWNSHPKNYGPGSRTCWTQSK-----------------EPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
A0A0E0RHR1 Uncharacterized protein2.4e-1353.95Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCWTQSK-----------------EPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
        MGHSNVWNSHPKNYGPGSR C+  S                   PG+R+ SW DQ+V  +VLQTVLPQQ QG+ +H
Subjt:  MGHSNVWNSHPKNYGPGSRTCWTQSK-----------------EPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
A0A4D9BYH1 Small subunit ribosomal protein S29e4.4e-2073.02Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCWTQ----SKEPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
        MGHSN+WNSHPKNYGPGSRTC  Q    S +P +RKSSW +QKVW  VLQTVLPQQC+GNW+H
Subjt:  MGHSNVWNSHPKNYGPGSRTCWTQ----SKEPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
A3CHR1 Uncharacterized protein2.4e-1353.95Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCWTQSK-----------------EPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
        MGHSNVWNSHPKNYGPGSR C+  S                   PG+R+ SW DQ+V  +VLQTVLPQQ QG+ +H
Subjt:  MGHSNVWNSHPKNYGPGSRTCWTQSK-----------------EPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH
SwissProt top hitse value%identityAlignment
Q4PM47 40S ribosomal protein S299.6e-0456.67Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGL
        MGH N+W SHP+ YGPGSR C   +   GL
Subjt:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGL
Q5I7K3 40S ribosomal protein S291.7e-0570Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGL
        MGHSNVWNSHPKNYG GSR C       GL
Subjt:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGL
Q5UAL3 40S ribosomal protein S299.6e-0456.67Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGL
        MGH+N+W SHP+ YG GSR+C + S   GL
Subjt:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGL
Q680P8 40S ribosomal protein S291.3e-0570Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGL
        MGHSNVWNSHPK YGPGSR C       GL
Subjt:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGL
Arabidopsis top hitse value%identityAlignment
AT3G43980.1 Ribosomal protein S14p/S29e family protein9.5e-0770Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGL
        MGHSNVWNSHPK YGPGSR C       GL
Subjt:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGL
AT3G44010.1 Ribosomal protein S14p/S29e family protein9.5e-0770Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGL
        MGHSNVWNSHPK YGPGSR C       GL
Subjt:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGL
AT4G33865.1 Ribosomal protein S14p/S29e family protein9.5e-0770Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGL
        MGHSNVWNSHPK YGPGSR C       GL
Subjt:  MGHSNVWNSHPKNYGPGSRTCWTQSKEPGL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAACTACGGCCCTGGCTCTCGCACCTGCTGGACACAGTCCAAAGAACCGGGTTTGCGGAAATCCTCATGGGTTGA
TCAGAAAGTATGGACTTATGTGCTGCAGACAGTGCTTCCGCAGCAATGCCAAGGAAATTGGATTCAT
mRNA sequenceShow/hide mRNA sequence
AAAGCATTTGCCTCTTCCAAGGATTTTCGAAGCCCTAACGAGCTCATCAGATTTCCTTCTCGCAAGAAATCCAAACATGGGGCACTCGAACGTCTGGAACTCGCACCCTA
AGAACTACGGCCCTGGCTCTCGCACCTGCTGGACACAGTCCAAAGAACCGGGTTTGCGGAAATCCTCATGGGTTGATCAGAAAGTATGGACTTATGTGCTGCAGACAGTG
CTTCCGCAGCAATGCCAAGGAAATTGGATTCAT
Protein sequenceShow/hide protein sequence
MGHSNVWNSHPKNYGPGSRTCWTQSKEPGLRKSSWVDQKVWTYVLQTVLPQQCQGNWIH