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Lsi03G005880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G005880
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNase H domain-containing protein
Genome locationchr03:7291653..7292978
RNA-Seq ExpressionLsi03G005880
SyntenyLsi03G005880
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8498196.1 hypothetical protein CXB51_007051 [Gossypium anomalum]4.7e-0752.94Show/hide
Query:  NANFSPNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNV-FSGFDSSS
        NA+F+ N SNA+K S S+VHS   LCP++ S  ECLDK  I DTP++  NC VIV K   F  F  SS
Subjt:  NANFSPNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNV-FSGFDSSS

MBA0738946.1 hypothetical protein [Gossypium gossypioides]1.2e-0550.79Show/hide
Query:  PNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNV-FSGFDSSS
        PN SNA+K S S VHS   LCP++ S  +CLDK  I DTP++  N  VIV K   F  F  SS
Subjt:  PNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNV-FSGFDSSS

MBA0740579.1 hypothetical protein [Gossypium gossypioides]4.1e-1162.5Show/hide
Query:  FSPNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNVFSGFDSSS
        F PN SNA+K S S VHS + LCPKY SS ECLDK SI+DTP++  NC VIV K   SG  SSS
Subjt:  FSPNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNVFSGFDSSS

MBA0880924.1 hypothetical protein [Gossypium schwendimanii]2.7e-0756.92Show/hide
Query:  FSPNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNVFS-GFDSSS
        F PN SNA+K S S VHS + LCPKY S   CLDK SI+DTP++  N  VIV K   S  F SSS
Subjt:  FSPNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNVFS-GFDSSS

PPS12429.1 hypothetical protein GOBAR_AA08204 [Gossypium barbadense]8.5e-0956.92Show/hide
Query:  FSPNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNVFS-GFDSSS
        F PN SNA+K S S  HS + LCP+Y SS ECLDK SI DTP++  NC VIV +   S  F SSS
Subjt:  FSPNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNVFS-GFDSSS

TrEMBL top hitse value%identityAlignment
A0A2P5YA22 Uncharacterized protein4.1e-0956.92Show/hide
Query:  FSPNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNVFS-GFDSSS
        F PN SNA+K S S  HS + LCP+Y SS ECLDK SI DTP++  NC VIV +   S  F SSS
Subjt:  FSPNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNVFS-GFDSSS

A0A7J8Z3E5 Uncharacterized protein2.8e-0560Show/hide
Query:  VHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNVFS-GFDSSS
        VHS + LCPKY SS  CLDK SI+DTP++  NC VIV K   S  F SSS
Subjt:  VHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNVFS-GFDSSS

A0A7J9BRZ3 Uncharacterized protein5.6e-0650.79Show/hide
Query:  PNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNV-FSGFDSSS
        PN SNA+K S S VHS   LCP++ S  +CLDK  I DTP++  N  VIV K   F  F  SS
Subjt:  PNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNV-FSGFDSSS

A0A7J9BWL6 Uncharacterized protein2.0e-1162.5Show/hide
Query:  FSPNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNVFSGFDSSS
        F PN SNA+K S S VHS + LCPKY SS ECLDK SI+DTP++  NC VIV K   SG  SSS
Subjt:  FSPNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNVFSGFDSSS

A0A7J9NCK6 RNase H domain-containing protein1.3e-0756.92Show/hide
Query:  FSPNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNVFS-GFDSSS
        F PN SNA+K S S VHS + LCPKY S   CLDK SI+DTP++  N  VIV K   S  F SSS
Subjt:  FSPNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNVFS-GFDSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCCAACTTTTCCCCAAACTTCTCAAATGCTTCCAAAGCTTCCTTATCTAAAGTCCACTCAGGGTTGCTTCTTTGCCCTAAATACACTTCATCTGAAGAATGTCT
TGACAAAATCTCAATAACTGACACCCCCACAAGAGCTTGCAACTGTGAAGTGATTGTTCTCAAGAATGTCTTCTCAGGATTCGACTCGAGCTCTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGCCAACTTTTCCCCAAACTTCTCAAATGCTTCCAAAGCTTCCTTATCTAAAGTCCACTCAGGGTTGCTTCTTTGCCCTAAATACACTTCATCTGAAGAATGTCT
TGACAAAATCTCAATAACTGACACCCCCACAAGAGCTTGCAACTGTGAAGTGATTGTTCTCAAGAATGTCTTCTCAGGATTCGACTCGAGCTCTTTGTAATCGGGAGTGC
CATTTTCTGGTAGGAACCGACGACTGGTCGATGATCTGTTGGGAGCGAAGCCGCCGTAAGGATATTGTCCAAAGTTAACAGCAGCATGAAGATTGTCCAAAGTTAACAGC
AGCATGAAGAGCTGAAGAGAACCATATAATGATTGTACAACTTTCAATCAGGTCTTGGAGGGATTGCATTTTTGGCCACCATGGTTCATCTTTCTTGTCTACATAGCCTT
TCTCACGAAGCTCTTTCCACCATGATTGAAGCTCTATATCATTATGTAGTGTTTGATCATCTTTGTAGTAGAAAGAGCAATAATCTTGTACCCATGTTTTGATTGCTGAC
CAAATCTCAAGACCATCAACAGCATATGGATAATTTTCTATTAGTAGTTGAAGTCCATGGGGAGAGCTTGAATCCTCTATTGCAACTCCTCTTTAACATATTAAGCAAGG
TTTTAATGTTAATCAATGAAATGAGAAATGGGAATTGTACTT
Protein sequenceShow/hide protein sequence
MNANFSPNFSNASKASLSKVHSGLLLCPKYTSSEECLDKISITDTPTRACNCEVIVLKNVFSGFDSSSL