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Lsi03G005940 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G005940
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncysteine-rich and transmembrane domain-containing protein WIH2-like
Genome locationchr03:7366587..7372506
RNA-Seq ExpressionLsi03G005940
SyntenyLsi03G005940
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044850 - Cysteine-rich and transmembrane domain-containing protein WIH1/2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011598.1 hypothetical protein SDJN02_26504, partial [Cucurbita argyrosperma subsp. argyrosperma]8.9e-2585.14Show/hide
Query:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKE
        MSYY QPPPPVG PPPQGYPP GYPPKDAYPP GYPPQGGYPPAGYP QGY PPPAYGPAYG P PQ  NQ KE
Subjt:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKE

XP_011658867.1 cysteine-rich and transmembrane domain-containing protein WIH2 [Cucumis sativus]2.5e-2778.82Show/hide
Query:  SYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYG-HPPPQRQNQNKEGLVKRFCYAVI
        SYY QPPPPVG PPPQGYPP GYPPKDAYPP GYPPQGGYPPAGYP QGYPPPP YGPAYG HPPPQ QNQ KE      C A +
Subjt:  SYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYG-HPPPQRQNQNKEGLVKRFCYAVI

XP_022952198.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita moschata]1.8e-2576.47Show/hide
Query:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKEGLVKRFCYAVI
        MSYY QPPPPVG PPPQGYPP GYPPKDAYPP GYPPQGGYPPAGYP QGY PPPAYGPAYG P PQ  NQ KE      C A +
Subjt:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKEGLVKRFCYAVI

XP_023553865.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita pepo subsp. pepo]2.1e-2677.65Show/hide
Query:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKEGLVKRFCYAVI
        MSYY QPPPPVG PPPQGYPP GYPPKDAYPPPGYPPQGGYPPAGYP QGY PPPAYGPAYG P PQ  NQ KE      C A +
Subjt:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKEGLVKRFCYAVI

XP_038888465.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Benincasa hispida]3.8e-2876.47Show/hide
Query:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKEGLVKRFCYAVI
        MSYY QPPPPVG PPPQG+PP GYPPKD YPPPGYPPQGGYPPAGYP QG+PPPPAY PAYGHPPP  QNQ KE      C A +
Subjt:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKEGLVKRFCYAVI

TrEMBL top hitse value%identityAlignment
A0A0A0K2W8 Uncharacterized protein1.2e-2778.82Show/hide
Query:  SYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYG-HPPPQRQNQNKEGLVKRFCYAVI
        SYY QPPPPVG PPPQGYPP GYPPKDAYPP GYPPQGGYPPAGYP QGYPPPP YGPAYG HPPPQ QNQ KE      C A +
Subjt:  SYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYG-HPPPQRQNQNKEGLVKRFCYAVI

A0A1S3BZZ2 cysteine-rich and transmembrane domain-containing protein A-like7.3e-2583.78Show/hide
Query:  SYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAY-GHPPPQRQNQNKE
        SYY QPPPPVG PPPQGYPP GYPPKDAYPP GYPPQGGYPPAGYP QGYPP P YGPAY GHPPPQ QN  K+
Subjt:  SYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAY-GHPPPQRQNQNKE

A0A5A7SME1 Cysteine-rich and transmembrane domain-containing protein A-like7.3e-2583.78Show/hide
Query:  SYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAY-GHPPPQRQNQNKE
        SYY QPPPPVG PPPQGYPP GYPPKDAYPP GYPPQGGYPPAGYP QGYPP P YGPAY GHPPPQ QN  K+
Subjt:  SYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAY-GHPPPQRQNQNKE

A0A6J1GJV9 cysteine-rich and transmembrane domain-containing protein WIH2-like8.6e-2676.47Show/hide
Query:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKEGLVKRFCYAVI
        MSYY QPPPPVG PPPQGYPP GYPPKDAYPP GYPPQGGYPPAGYP QGY PPPAYGPAYG P PQ  NQ KE      C A +
Subjt:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKEGLVKRFCYAVI

A0A6J1I9Y5 cysteine-rich and transmembrane domain-containing protein WIH2-like1.4e-2372.94Show/hide
Query:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKEGLVKRFCYAVI
        MSYY QPPPPVG PPPQGYPP GYPPKDAYPPPGYPPQGGYPPAGYP QGYPP     PAYG P PQ  NQ KE      C A +
Subjt:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKEGLVKRFCYAVI

SwissProt top hitse value%identityAlignment
P09241 Rhodopsin1.9e-0962.86Show/hide
Query:  QPPPPVGFPPPQGYPPAGYPPKDAYPPP-GYPPQGGYPPAGYPLQGYPP---PPAYGPAYGHPPPQRQNQ
        QPP     PPPQGYPP GYPP+ AYPPP GYPPQ GYPP GYP QGYPP   PP      G PP    NQ
Subjt:  QPPPPVGFPPPQGYPPAGYPPKDAYPPP-GYPPQGGYPPAGYPLQGYPP---PPAYGPAYGHPPPQRQNQ

P24603 Rhodopsin2.1e-0871.7Show/hide
Query:  PPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQ
        PPQGYPP GYPP    PP GYPPQ GYPP GYP QGYPPPP   P  G PPPQ
Subjt:  PPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQ

Q17094 Rhodopsin (Fragment)2.1e-0871.7Show/hide
Query:  PPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQ
        PPQGYPP GYPP    PP GYPPQ GYPP GYP QGYPPPP   P  G PPPQ
Subjt:  PPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQ

Q8LCL8 Cysteine-rich and transmembrane domain-containing protein B1.4e-0952.08Show/hide
Query:  QPPPPVGFPPPQGYPPAGYPPKDAYPPPG--YPPQGGYPPAGYPLQGYPP---PPAYGPAYGHP----PPQRQNQNK------EGLVKRF-CYAVI
        Q PP VG PP   YP  G PPKDAYPPPG  YP QG  PP GYP QGYPP   PP   P  G+P    PPQ+Q Q K      EG +    CY V+
Subjt:  QPPPPVGFPPPQGYPPAGYPPKDAYPPPG--YPPQGGYPPAGYPLQGYPP---PPAYGPAYGHP----PPQRQNQNK------EGLVKRF-CYAVI

Q8S8M0 Cysteine-rich and transmembrane domain-containing protein WIH24.6e-1661.18Show/hide
Query:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQG----GYPPAGYPLQGYPP---PPAYGPAYGHPPPQRQNQNKEGLVK
        MS Y Q  PPVG PPPQGYPP GY PKDAYPP GYPPQG    GYPP GYP QGYP    PP Y P Y  PP  +Q Q+  G ++
Subjt:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQG----GYPPAGYPLQGYPP---PPAYGPAYGHPPPQRQNQNKEGLVK

Arabidopsis top hitse value%identityAlignment
AT2G41420.1 proline-rich family protein3.2e-1761.18Show/hide
Query:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQG----GYPPAGYPLQGYPP---PPAYGPAYGHPPPQRQNQNKEGLVK
        MS Y Q  PPVG PPPQGYPP GY PKDAYPP GYPPQG    GYPP GYP QGYP    PP Y P Y  PP  +Q Q+  G ++
Subjt:  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQG----GYPPAGYPLQGYPP---PPAYGPAYGHPPPQRQNQNKEGLVK

AT3G49845.1 unknown protein1.2e-1165.08Show/hide
Query:  PPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYG---PAYGHPPPQ
        PPP G+PP +GYPPAGYPP   YPPP Y PQ GYPPAGYP    PP   YG   PA G+PPPQ
Subjt:  PPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYG---PAYGHPPPQ

AT5G17650.1 glycine/proline-rich protein1.1e-0948.72Show/hide
Query:  GNMSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKEGL
        G  S Y  PPP    PPP GYPP  YPP   YPP GYPP  GYPPAGYP  GY       P++G+P P     +  G+
Subjt:  GNMSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKEGL

AT5G45350.1 proline-rich family protein3.6e-0855.38Show/hide
Query:  PPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQ--GYPPPPAYG-----PAYGHPPP
        PP G+PPP  YPPAGYP +   PPPG  P  GYPP  YP    GYPP P YG     P YG  PP
Subjt:  PPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQ--GYPPPPAYG-----PAYGHPPP

AT5G67600.1 unknown protein5.6e-0951.81Show/hide
Query:  YGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPP----AGYPLQGYPPPPAYGPAYGHPPPQRQNQNK-EGLVKRFC
        Y Q   PVG PPPQ     GYPPKD YPP GYPP  GYPP     GYP QGYPP     P Y   P Q+QN    EG +   C
Subjt:  YGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPP----AGYPLQGYPPPPAYGPAYGHPPPQRQNQNK-EGLVKRFC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAGGGAAATATGAGTTACTACGGCCAGCCACCTCCTCCCGTCGGCTTTCCTCCGCCGCAGGGTTATCCGCCGGCAGGATATCCTCCGAAGGATGCTTATCCGCC
GCCAGGATATCCACCGCAGGGCGGTTATCCACCTGCTGGTTATCCTCTGCAGGGATATCCACCTCCGCCGGCTTATGGTCCGGCGTACGGGCATCCTCCGCCTCAACGTC
AAAACCAAAATAAAGAAGGATTGGTCAAACGCTTTTGTTATGCTGTAATTTCGTGGATGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAGGGAAATATGAGTTACTACGGCCAGCCACCTCCTCCCGTCGGCTTTCCTCCGCCGCAGGGTTATCCGCCGGCAGGATATCCTCCGAAGGATGCTTATCCGCC
GCCAGGATATCCACCGCAGGGCGGTTATCCACCTGCTGGTTATCCTCTGCAGGGATATCCACCTCCGCCGGCTTATGGTCCGGCGTACGGGCATCCTCCGCCTCAACGTC
AAAACCAAAATAAAGAAGGATTGGTCAAACGCTTTTGTTATGCTGTAATTTCGTGGATGCCTTGATATGACCTTTTGGAGTGTGATCAAACCACATAAAAAGTTGAATTC
CTCCACTAATGTTTAGATTTGAATTTCATCATCTCCAATATACAATGTTTCTTTTTCATCTCTACTAGGACTAATGTGTATTTGAAATAGAATTATTATTAAATAGATAT
ATATTGTCAAGTTTTAATATAGTGATTAATATCAACGAGAATAGTGGAAGCTTATATGAATATCACATGTATAATCGATGAATTTTGTTTAGAGGATTAAATAAAAAAAA
TTAGGAGAAGAGAATAAG
Protein sequenceShow/hide protein sequence
MAEGNMSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKEGLVKRFCYAVISWMP