CuGenDBv2

Gene ID	Lsi03G005970
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Cell cycle progression protein 1
Genome location	chr03:7428610..7431343
RNA-Seq Expression	Lsi03G005970
Synteny	Lsi03G005970
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009507 - chloroplast (cellular component) GO:0009522 - photosystem I (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7022506.1 hypothetical protein SDJN02_16238, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-20

73.47

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTT--TTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE
        MSSIGQ+ILMALA+TLN+FASSNVQSVQRN+   PPTT  TT+A+ +A S I RRGL+LSA    A AA   AVDSRTELLKRYLKKSE+NKEKNDKE
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTT--TTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE

XP_004136934.1 uncharacterized protein LOC101214221 [Cucumis sativus]

7.8e-21

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE
        MSSIGQSILMALAVTLNKFASSNVQSVQRN+A         ATAT  S IGRR LLLS +A  +AAA    VDSRTELLKRYLKKSE+NKEKNDKE
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE

XP_008455049.1 PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo]

1.2e-21

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE
        MSSIGQSILMALAVTLNKFASSNVQSVQRN+          ATAT  S IGRR LLLS VA  + AA   AVDSRTELLKRYLKKSE+NKEKNDKE
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE

XP_022927848.1 uncharacterized protein LOC111434615 [Cucurbita moschata]

7.8e-21

74.49

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTT--TTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE
        MSSIGQ+ILMALA+TLN+FASSNVQSVQRN+   PPTT  TT+A+ +A S I RRGLLLSA    A AA   AVDSRTELLKRYLKKSE+NKEKNDKE
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTT--TTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE

XP_038887440.1 uncharacterized protein LOC120077574 [Benincasa hispida]

4.6e-29

88.54

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE
        MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKP T    ATAT GS IGRRGLLLSAVA+ AAA PEEAVDSRTELLKRYLKKSE+NKEKNDKE
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C176 uncharacterized protein LOC103495319

5.8e-22

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE
        MSSIGQSILMALAVTLNKFASSNVQSVQRN+          ATAT  S IGRR LLLS VA  + AA   AVDSRTELLKRYLKKSE+NKEKNDKE
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE

A0A6J1D554 uncharacterized protein LOC111017388 isoform X2

5.5e-20

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKEVIFL
        MSSIGQSILMALAVT+NKFASSNVQSV RNQ          + A A S IGRRGLL SAVA  AA AP   VDSRTELLKRYLKKSE NKEKNDKE I L
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKEVIFL

A0A6J1D574 uncharacterized protein LOC111017388 isoform X1

3.5e-19

73.96

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE
        MSSIGQSILMALAVT+NKFASSNVQSV RNQ          + A A S IGRRGLL SAVA  AA AP   VDSRTELLKRYLKKSE NKEKNDKE
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE

A0A6J1EM63 uncharacterized protein LOC111434615

3.8e-21

74.49

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTT--TTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE
        MSSIGQ+ILMALA+TLN+FASSNVQSVQRN+   PPTT  TT+A+ +A S I RRGLLLSA    A AA   AVDSRTELLKRYLKKSE+NKEKNDKE
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTT--TTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE

A0A6J1JNZ7 uncharacterized protein LOC111486201

1.9e-20

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE
        MSSIGQ+ILMALA+TLN+FASSNVQSVQRN+   PPTT   AT +A S I RRGLLLSA    A AA   AVDSRTELLKRYLKKSE+NKEKNDKE
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49975.1 INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.7e-13

51.04

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE
        MSSI QSILMAL VT+NK+ASSNVQ+V+RN   +   T   A       +GRR +L S+ +  AA     A+ S  +LL++YLKK+E+NK KNDKE
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE

Sequences

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CDS sequence

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ATGGACCAAGAAAGCCTCATCTATTCTCTTCAACCTCATCCTCAAAACTCAAAACTCAAAACTCTCACTCCGATGAGTTCCATCGGCCAAAGCATTCTCATGGCCCTCGC
CGTCACTCTCAACAAATTCGCTTCCTCTAACGTTCAATCCGTTCAGAGAAACCAAGCCAACAAGCCTCCCACCACCACCACCGCCGCCACTGCCACCGCCGGTTCTGCAA
TCGGAAGAAGAGGCCTCCTCTTGTCCGCCGTTGCTTCCACCGCCGCCGCCGCTCCTGAAGAAGCCGTCGACTCCAGAACCGAGCTGCTAAAAAGGTACCTCAAGAAGTCT
GAAGATAACAAAGAAAAGAATGACAAGGAGGTAATTTTTTTGTAA

mRNA sequence

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CTTTTATTAAAGGTATATTATATGGACCAAGAAAGCCTCATCTATTCTCTTCAACCTCATCCTCAAAACTCAAAACTCAAAACTCTCACTCCGATGAGTTCCATCGGCCA
AAGCATTCTCATGGCCCTCGCCGTCACTCTCAACAAATTCGCTTCCTCTAACGTTCAATCCGTTCAGAGAAACCAAGCCAACAAGCCTCCCACCACCACCACCGCCGCCA
CTGCCACCGCCGGTTCTGCAATCGGAAGAAGAGGCCTCCTCTTGTCCGCCGTTGCTTCCACCGCCGCCGCCGCTCCTGAAGAAGCCGTCGACTCCAGAACCGAGCTGCTA
AAAAGGTACCTCAAGAAGTCTGAAGATAACAAAGAAAAGAATGACAAGGAGGTAATTTTTTTGTAATTTTGCCTATATTCTATTTTATTAAAAAATTTAAATCCTTATTT
TCTAGTGTTCTAGAAAAATGATTTAAATATGATCGTTTATGGTCTAACTATCACTCTATAATATATGATACAAAAAAATTTGTAATTTTAACAGAGATTGGAAAGTTACT
ACAAGCGAAATT

Protein sequence

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MDQESLIYSLQPHPQNSKLKTLTPMSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKS
EDNKEKNDKEVIFL

Lsi03G005970 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome