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Lsi03G006300 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G006300
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr03:7836228..7837412
RNA-Seq ExpressionLsi03G006300
SyntenyLsi03G006300
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF27682.1 conserved hypothetical protein [Ricinus communis]1.0e-1186.27Show/hide
Query:  SGVRSKELAYQGGSFDHSVRSKARLHQALEQRRYAPKNKEKFLIEGLMFRV
        SGVRS+ELAYQG SFDHSVRSKARLHQALEQR+YA   KEKFLIEGLM RV
Subjt:  SGVRSKELAYQGGSFDHSVRSKARLHQALEQRRYAPKNKEKFLIEGLMFRV
EEF30423.1 conserved hypothetical protein [Ricinus communis]4.6e-0972.55Show/hide
Query:  SGVRSKELAYQGGSFDHSVRSKARLHQALEQRRYAPKNKEKFLIEGLMFRV
        S V S+ELAYQ  SF+HSVRSK RLHQALEQR+Y+ K+KE FLIEGLM R+
Subjt:  SGVRSKELAYQGGSFDHSVRSKARLHQALEQRRYAPKNKEKFLIEGLMFRV
VVA33529.1 PREDICTED: IST1 [Prunus dulcis]2.1e-0993.94Show/hide
Query:  KEKFLIEGLMFRVFCWSHDFRLRNGDPMHAPIW
        KEKFLIEGLM RVF WSHDFRLRNGDPMHAPIW
Subjt:  KEKFLIEGLMFRVFCWSHDFRLRNGDPMHAPIW
WP_131796640.1 DUF4283 domain-containing protein [Candidatus Frankia datiscae]7.9e-0996.55Show/hide
Query:  LIEGLMFRVFCWSHDFRLRNGDPMHAPIW
        +IEGLMFRVFCWSHDFRLRNGDPMHAPIW
Subjt:  LIEGLMFRVFCWSHDFRLRNGDPMHAPIW
TrEMBL top hitse value%identityAlignment
A0A5E4G1B8 PREDICTED: IST11.0e-0993.94Show/hide
Query:  KEKFLIEGLMFRVFCWSHDFRLRNGDPMHAPIW
        KEKFLIEGLM RVF WSHDFRLRNGDPMHAPIW
Subjt:  KEKFLIEGLMFRVFCWSHDFRLRNGDPMHAPIW
B9T143 Uncharacterized protein2.2e-0972.55Show/hide
Query:  SGVRSKELAYQGGSFDHSVRSKARLHQALEQRRYAPKNKEKFLIEGLMFRV
        S V S+ELAYQ  SF+HSVRSK RLHQALEQR+Y+ K+KE FLIEGLM R+
Subjt:  SGVRSKELAYQGGSFDHSVRSKARLHQALEQRRYAPKNKEKFLIEGLMFRV
B9T8X7 Uncharacterized protein4.8e-1286.27Show/hide
Query:  SGVRSKELAYQGGSFDHSVRSKARLHQALEQRRYAPKNKEKFLIEGLMFRV
        SGVRS+ELAYQG SFDHSVRSKARLHQALEQR+YA   KEKFLIEGLM RV
Subjt:  SGVRSKELAYQGGSFDHSVRSKARLHQALEQRRYAPKNKEKFLIEGLMFRV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGGGCTTTGGTCTGCTTCCTTCTTTTCTTTTGAATCACAGGAAATGATTCAATCTCGAACTGGGCCTGACTATTCAGTTGAACGAGTCAAGTCAGTAATTTTTCC
TCAGCGTTTCGTTTCTAAGCTAGGTTACCAGAGCTTGGGGATTTTGTTTAGTTACAAAACCCTTTCTAAGGATGAGGACGGTAGTTCGGGAGTTCGCTCGAAAGAACTGG
CGTACCAAGGGGGATCTTTCGATCACTCTGTTAGATCCAAGGCACGTCTTCATCAAGCTCTCGAACAAAGAAGATATGCACCAAAAAACAAAGAGAAGTTTTTGATTGAG
GGATTGATGTTTAGGGTTTTCTGCTGGAGCCATGATTTCCGTCTCCGCAATGGTGATCCAATGCATGCGCCTATTTGGAGGAAACTTCTTGTCTGTAACGAACGAAAGAA
CCAAGGGCTATTACTCGAATCCCGGGCTCAAAGGGCATTCGATGGTCTTCGAGATGGTCTATCTAGTTCCATTCCAGAGGGATCGATTGTCATGTCTGAGGAATTACAAG
TGGACGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGGGCTTTGGTCTGCTTCCTTCTTTTCTTTTGAATCACAGGAAATGATTCAATCTCGAACTGGGCCTGACTATTCAGTTGAACGAGTCAAGTCAGTAATTTTTCC
TCAGCGTTTCGTTTCTAAGCTAGGTTACCAGAGCTTGGGGATTTTGTTTAGTTACAAAACCCTTTCTAAGGATGAGGACGGTAGTTCGGGAGTTCGCTCGAAAGAACTGG
CGTACCAAGGGGGATCTTTCGATCACTCTGTTAGATCCAAGGCACGTCTTCATCAAGCTCTCGAACAAAGAAGATATGCACCAAAAAACAAAGAGAAGTTTTTGATTGAG
GGATTGATGTTTAGGGTTTTCTGCTGGAGCCATGATTTCCGTCTCCGCAATGGTGATCCAATGCATGCGCCTATTTGGAGGAAACTTCTTGTCTGTAACGAACGAAAGAA
CCAAGGGCTATTACTCGAATCCCGGGCTCAAAGGGCATTCGATGGTCTTCGAGATGGTCTATCTAGTTCCATTCCAGAGGGATCGATTGTCATGTCTGAGGAATTACAAG
TGGACGATTAA
Protein sequenceShow/hide protein sequence
MRGLWSASFFSFESQEMIQSRTGPDYSVERVKSVIFPQRFVSKLGYQSLGILFSYKTLSKDEDGSSGVRSKELAYQGGSFDHSVRSKARLHQALEQRRYAPKNKEKFLIE
GLMFRVFCWSHDFRLRNGDPMHAPIWRKLLVCNERKNQGLLLESRAQRAFDGLRDGLSSSIPEGSIVMSEELQVDD