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Lsi03G006310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G006310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosomal protein S10
Genome locationchr03:7841411..7842214
RNA-Seq ExpressionLsi03G006310
SyntenyLsi03G006310
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001848 - Ribosomal protein S10
IPR027486 - Ribosomal protein S10 domain
IPR036838 - Ribosomal protein S10 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAD25546.1 TPA_asm: hypothetical protein HUJ06_027010 [Nelumbo nucifera]5.6e-4693.33Show/hide
Query:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR
        ++TGRGVSQKE PPKVTTTKIRIVIRSFD+PF ENHFWGLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKKQFLVIKTE HELRKKFFRLKRR
Subjt:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR

Query:  ATRRT
        ATRRT
Subjt:  ATRRT

KAE9584349.1 putative ribosomal protein S10 [Lupinus albus]1.4e-4492.38Show/hide
Query:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR
        ++TGRGVSQKERPPKVTTTKIRIVIRSFD+PFFENHF GLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKK+ LVIKTE HELRKKFFRLKRR
Subjt:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR

Query:  ATRRT
        ATRRT
Subjt:  ATRRT

KYP31509.1 hypothetical protein KK1_048135 [Cajanus cajan]1.2e-4592.38Show/hide
Query:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR
        ++TGRGVSQKERPPKVTTTKIRIVIRSFD+PFFENHF GLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKK+FL+IKTE+HELRKKFFRLKRR
Subjt:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR

Query:  ATRRT
        ATRRT
Subjt:  ATRRT

QVJ97849.1 hypothetical protein [Apium graveolens]1.1e-4695.24Show/hide
Query:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR
        +KTGRGVSQKERPPKVTTTKIRIVIRSFD+PFFEN FWGLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKKQFLVIK ERHELRKKFFRLKRR
Subjt:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR

Query:  ATRRT
        ATRRT
Subjt:  ATRRT

YP_009935535.1 ribosomal protein S10 [Sapindus mukorossi]1.4e-4493.33Show/hide
Query:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR
        ++TGRGVSQKERPPKVTTTKIRIVIRSFD+PF EN F GLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR
Subjt:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR

Query:  ATRRT
        ATRRT
Subjt:  ATRRT

TrEMBL top hitse value%identityAlignment
A0A151UHR2 Ribosomal_S10 domain-containing protein6.0e-4692.38Show/hide
Query:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR
        ++TGRGVSQKERPPKVTTTKIRIVIRSFD+PFFENHF GLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKK+FL+IKTE+HELRKKFFRLKRR
Subjt:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR

Query:  ATRRT
        ATRRT
Subjt:  ATRRT

A0A1J7GJX4 Ribosomal_S10 domain-containing protein6.7e-4592.38Show/hide
Query:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR
        ++TGRGVSQKERPPKVTTTKIRIVIRSFD+PFFENHF GLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKK+ LVIKTE HELRKKFFRLKRR
Subjt:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR

Query:  ATRRT
        ATRRT
Subjt:  ATRRT

A0A5C2FRB4 Ribosomal protein S106.7e-4593.33Show/hide
Query:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR
        ++TGRGVSQKERPPKVTTTKIRIVIRSFD+PFFEN  WGLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKK+FLVIKTERHELRKKFFRLKRR
Subjt:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR

Query:  ATRRT
        ATRRT
Subjt:  ATRRT

A0A6A5L2R1 Putative ribosomal protein S106.7e-4592.38Show/hide
Query:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR
        ++TGRGVSQKERPPKVTTTKIRIVIRSFD+PFFENHF GLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKK+ LVIKTE HELRKKFFRLKRR
Subjt:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR

Query:  ATRRT
        ATRRT
Subjt:  ATRRT

A0A7H1CQT7 Ribosomal protein S106.7e-4593.33Show/hide
Query:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR
        ++TGRGVSQKERPPKVTTTKIRIVIRSFD+PF EN F GLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR
Subjt:  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR

Query:  ATRRT
        ATRRT
Subjt:  ATRRT

SwissProt top hitse value%identityAlignment
A0LII9 30S ribosomal protein S104.5e-0636.84Show/hide
Query:  VTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIG--------LPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVI
        +T  +IRI ++++D+   +     +    +K G        LP     YTVLRSPH+DKKSREQFE+ + K+ + I
Subjt:  VTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIG--------LPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVI

P26869 Ribosomal protein S10, mitochondrial2.2e-1664.2Show/hide
Query:  TTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLK
        T KI IVI+S     FEN   GL   TRKIGLP+ +  YTVLRSPHIDKKSREQFEM I KQ LVI+TE H+LR+K   LK
Subjt:  TTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLK

P42797 40S ribosomal protein S10, mitochondrial1.5e-2251.72Show/hide
Query:  PAKRRVVGKERERAGGSHKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVI
        P  R+ +  ++E A            +E   K+  TKI I IRSF NP  E   W LPP+TRK+ +P++R  YTVLRSPH+DKKSREQFEM  KK+FLVI
Subjt:  PAKRRVVGKERERAGGSHKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVI

Query:  KTERHELRKKFFRLKR
        K + HEL KK F LKR
Subjt:  KTERHELRKKFFRLKR

P51428 Ribosomal protein S10, mitochondrial6.7e-3487.95Show/hide
Query:  TTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR
        TTKIRIVIRSFD+PF ENHF GLPPYT KIGLPESRV YTVLRSPHIDKKSREQFEMEIKK++LVIKTE+HELRKKFF LKR+
Subjt:  TTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR

Q6MJ14 30S ribosomal protein S107.7e-0641.67Show/hide
Query:  KIRIVIRSFDNPFFENHFWGLPPYTRKIG--------LPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVI
        KIRI +++FD+   +     +    R+ G        LP     YTVLRSPH+DKKSREQFE+   K+ L I
Subjt:  KIRIVIRSFDNPFFENHFWGLPPYTRKIG--------LPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVI

Arabidopsis top hitse value%identityAlignment
AT3G22300.1 ribosomal protein S101.1e-2351.72Show/hide
Query:  PAKRRVVGKERERAGGSHKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVI
        P  R+ +  ++E A            +E   K+  TKI I IRSF NP  E   W LPP+TRK+ +P++R  YTVLRSPH+DKKSREQFEM  KK+FLVI
Subjt:  PAKRRVVGKERERAGGSHKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVI

Query:  KTERHELRKKFFRLKR
        K + HEL KK F LKR
Subjt:  KTERHELRKKFFRLKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGCTTTCTCGTCTAAAGACAGGGGTGAGCTTTTTCACTATACAATGACCACTACGAACGAAGGACCAACGACGATGAAGGAGGAGAAGGACGGCGAGGAGCCCAC
TGGTTGTTGGACTAACCTATGGTGTGTTCCGGCGAAGCGCCGGGTTGTTGGTAAGGAGCGTGAGCGGGCGGGGGGCTCACACAAAACAGGAAGAGGAGTCAGCCAAAAAG
AAAGACCACCAAAAGTCACGACCACCAAGATACGCATAGTGATTCGATCTTTTGATAACCCATTTTTTGAAAACCATTTTTGGGGGCTTCCGCCTTACACACGGAAGATT
GGATTGCCTGAATCACGAGTCAACTATACTGTGTTACGATCACCTCATATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATCAAGAAACAATTTCTGGTCATAAA
AACAGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCGACTCGGAGGACATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGGCTTTCTCGTCTAAAGACAGGGGTGAGCTTTTTCACTATACAATGACCACTACGAACGAAGGACCAACGACGATGAAGGAGGAGAAGGACGGCGAGGAGCCCAC
TGGTTGTTGGACTAACCTATGGTGTGTTCCGGCGAAGCGCCGGGTTGTTGGTAAGGAGCGTGAGCGGGCGGGGGGCTCACACAAAACAGGAAGAGGAGTCAGCCAAAAAG
AAAGACCACCAAAAGTCACGACCACCAAGATACGCATAGTGATTCGATCTTTTGATAACCCATTTTTTGAAAACCATTTTTGGGGGCTTCCGCCTTACACACGGAAGATT
GGATTGCCTGAATCACGAGTCAACTATACTGTGTTACGATCACCTCATATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATCAAGAAACAATTTCTGGTCATAAA
AACAGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCGACTCGGAGGACATAA
Protein sequenceShow/hide protein sequence
MGAFSSKDRGELFHYTMTTTNEGPTTMKEEKDGEEPTGCWTNLWCVPAKRRVVGKERERAGGSHKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKI
GLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT