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Lsi03G007120 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G007120
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMADS-box protein JOINTLESS-like isoform X2
Genome locationchr03:9514223..9522280
RNA-Seq ExpressionLsi03G007120
SyntenyLsi03G007120
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136891.2 MADS-box protein SVP isoform X1 [Cucumis sativus]2.5e-2572.83Show/hide
Query:  ILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK
        ILERHNSVHSENLPNLNEPSVELQ   +     ++ +  +++ L+QMKGEELQGLG+EELKKLEKSLQGGL+RVAEIMDG+NT+L+SDIGRK
Subjt:  ILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK

XP_008455141.1 PREDICTED: MADS-box protein JOINTLESS-like isoform X2 [Cucumis melo]2.8e-2468.42Show/hide
Query:  ILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTE
        ILERHN+VHS+NLPNLNEPSVELQ   +     ++ +  +++ L+QMKGEELQGLG+EELKKLEKSLQGGL+RVAEIMDG+N+EL+S IGRK+ E
Subjt:  ILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTE

XP_022141961.1 MADS-box protein JOINTLESS-like isoform X1 [Momordica charantia]4.8e-2459.13Show/hide
Query:  GILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK-------
        G+LERHNSVHSENLPNLNEPSVELQ   +     ++ +  + + L+QMKGEELQGLG+EELKKLEKSLQGGLNRV+E+MDGRN +LI DI RK       
Subjt:  GILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK-------

Query:  DTELNPIEPIIPLTE
        +  LN ++ +  +T+
Subjt:  DTELNPIEPIIPLTE

XP_031744925.1 MADS-box protein SVP isoform X2 [Cucumis sativus]2.5e-2572.83Show/hide
Query:  ILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK
        ILERHNSVHSENLPNLNEPSVELQ   +     ++ +  +++ L+QMKGEELQGLG+EELKKLEKSLQGGL+RVAEIMDG+NT+L+SDIGRK
Subjt:  ILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK

XP_038886864.1 MADS-box protein SVP-like isoform X3 [Benincasa hispida]6.2e-2471.74Show/hide
Query:  ILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK
        ILERHNSV+SENLPNLNEPSVELQ   +     ++ +  + + L+QMKGEELQGLG++ELKKLEKSLQG L+RVAEIMDGRNT+LISDIGRK
Subjt:  ILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK

TrEMBL top hitse value%identityAlignment
A0A1S3BZT6 MADS-box protein JOINTLESS-like isoform X21.4e-2468.42Show/hide
Query:  ILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTE
        ILERHN+VHS+NLPNLNEPSVELQ   +     ++ +  +++ L+QMKGEELQGLG+EELKKLEKSLQGGL+RVAEIMDG+N+EL+S IGRK+ E
Subjt:  ILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTE

A0A1S3C1G2 MADS-box protein SVP-like isoform X18.8e-2469.57Show/hide
Query:  ILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK
        ILERHN+VHS+NLPNLNEPSVELQ   +     ++ +  +++ L+QMKGEELQGLG+EELKKLEKSLQGGL+RVAEIMDG+N+EL+S IGRK
Subjt:  ILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK

A0A6J1CKS2 MADS-box protein JOINTLESS-like isoform X12.3e-2459.13Show/hide
Query:  GILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK-------
        G+LERHNSVHSENLPNLNEPSVELQ   +     ++ +  + + L+QMKGEELQGLG+EELKKLEKSLQGGLNRV+E+MDGRN +LI DI RK       
Subjt:  GILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK-------

Query:  DTELNPIEPIIPLTE
        +  LN ++ +  +T+
Subjt:  DTELNPIEPIIPLTE

A0A6J1CLA0 MADS-box protein JOINTLESS-like isoform X23.0e-2469.89Show/hide
Query:  GILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK
        G+LERHNSVHSENLPNLNEPSVELQ   +     ++ +  + + L+QMKGEELQGLG+EELKKLEKSLQGGLNRV+E+MDGRN +LI DI RK
Subjt:  GILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK

A0A6J1IA12 MADS-box protein JOINTLESS-like isoform X22.0e-2368.82Show/hide
Query:  GILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK
        G+LE+H+SVHSENLPNLNEPSVE Q   +     ++ +  + + L+QMKGEELQGLGLEELKKLEKSL GGL+RVAE+MDGRN ELI DIGRK
Subjt:  GILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK

SwissProt top hitse value%identityAlignment
Q5K4R0 MADS-box transcription factor 474.4e-0434.02Show/hide
Query:  ILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL
        I++R+NS HS+ L       ++LQ    S      + L   +  L+QM+GEEL  L +E+L++LEKSL+ GL  V +    +  + I  + RK  +L
Subjt:  ILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL

Q69TG5 MADS-box transcription factor 556.7e-0536.59Show/hide
Query:  LQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTELNPIEPIIPLTEPSIHLPIHPFRIDFTHNI
        L+QM+GEEL+GL +EEL+++EK+L+ GL RV    D +  + IS++ RK  +L   E  + L +    +P     +  T N+
Subjt:  LQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTELNPIEPIIPLTEPSIHLPIHPFRIDFTHNI

Q9FUY6 MADS-box protein JOINTLESS5.3e-1042.27Show/hide
Query:  ILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL
        ILER + +HS+NL  L++PS+ELQ    S +   S  +  +++ L+QM+GEELQGL +EEL++LE+SL+ GL+RV E    +    I+ + +K   L
Subjt:  ILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL

Q9FVC1 MADS-box protein SVP8.2e-1143.3Show/hide
Query:  ILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL
        +LERHN + S+NL  L++PS+ELQ    S     S  +  +++ L+QM+GEELQGL +EEL++LEK+L+ GL RV E    +    IS++ +K  +L
Subjt:  ILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL

Q9XJ66 MADS-box transcription factor 222.0e-0938.54Show/hide
Query:  ILERHNSVHSENLPNLNEPSVEL---QSYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL
        I++++N+ HS NL    +PS++L    S +   ++ L   +  L+QM+GEEL+GL ++EL++LEK+L+ GL+RV    D +  E IS++ RK ++L
Subjt:  ILERHNSVHSENLPNLNEPSVEL---QSYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL

Arabidopsis top hitse value%identityAlignment
AT2G22540.1 K-box region and MADS-box transcription factor family protein5.8e-1243.3Show/hide
Query:  ILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL
        +LERHN + S+NL  L++PS+ELQ    S     S  +  +++ L+QM+GEELQGL +EEL++LEK+L+ GL RV E    +    IS++ +K  +L
Subjt:  ILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL

AT2G22540.2 K-box region and MADS-box transcription factor family protein5.8e-1243.3Show/hide
Query:  ILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL
        +LERHN + S+NL  L++PS+ELQ    S     S  +  +++ L+QM+GEELQGL +EEL++LEK+L+ GL RV E    +    IS++ +K  +L
Subjt:  ILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL

AT3G57230.2 AGAMOUS-like 169.9e-0432.97Show/hide
Query:  ILERHNSVHSENLPNLNEPSVELQS-YFQTYSDYLFPQNYIL-QQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK
        ++ER++    E   + N+P+ E+Q  Y  T   Y + +  +L +QM GEEL GL +E L+ LE  L+  L  V    D    E I  + R+
Subjt:  ILERHNSVHSENLPNLNEPSVELQS-YFQTYSDYLFPQNYIL-QQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRK

AT4G24540.1 AGAMOUS-like 241.5e-0432.14Show/hide
Query:  ILERHNSVHSENLPNL-NEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAE-----------IMDGRNTELISD
        IL R+ S+H+ N+  L + PS  L+         S  +  +   L++++GE+L GL LEEL++LEK L+ GL+RV+E            ++ R +EL+ +
Subjt:  ILERHNSVHSENLPNL-NEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAE-----------IMDGRNTELISD

Query:  IGRKDTELNPIE
          R   +L  +E
Subjt:  IGRKDTELNPIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATATTGGGATACTTGAGAGACATAATAGTGTTCATTCAGAGAACCTTCCCAATTTGAATGAACCATCAGTTGAGTTGCAGAGTTATTTTCAAACATACAGTGATTA
TTTATTTCCTCAAAATTACATCTTACAGCAAATGAAAGGAGAGGAGCTTCAAGGGTTAGGGTTGGAGGAACTTAAGAAATTAGAGAAATCACTTCAAGGAGGACTCAACC
GTGTTGCAGAAATTATGGATGGAAGAAATACTGAATTGATCAGTGATATTGGAAGGAAGGATACCGAACTGAACCCAATCGAACCGATTATACCTTTAACCGAGCCCTCT
ATACATCTGCCCATTCACCCTTTTAGAATAGATTTCACCCACAACATCTACAACTTCTTACTCAAAAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAATATTGGGATACTTGAGAGACATAATAGTGTTCATTCAGAGAACCTTCCCAATTTGAATGAACCATCAGTTGAGTTGCAGAGTTATTTTCAAACATACAGTGATTA
TTTATTTCCTCAAAATTACATCTTACAGCAAATGAAAGGAGAGGAGCTTCAAGGGTTAGGGTTGGAGGAACTTAAGAAATTAGAGAAATCACTTCAAGGAGGACTCAACC
GTGTTGCAGAAATTATGGATGGAAGAAATACTGAATTGATCAGTGATATTGGAAGGAAGGATACCGAACTGAACCCAATCGAACCGATTATACCTTTAACCGAGCCCTCT
ATACATCTGCCCATTCACCCTTTTAGAATAGATTTCACCCACAACATCTACAACTTCTTACTCAAAAGATAA
Protein sequenceShow/hide protein sequence
MNIGILERHNSVHSENLPNLNEPSVELQSYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTELNPIEPIIPLTEPS
IHLPIHPFRIDFTHNIYNFLLKR