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Lsi03G007150 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G007150
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr03:9540187..9544083
RNA-Seq ExpressionLsi03G007150
SyntenyLsi03G007150
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFZ18991.1 hypothetical protein Acr_27g0007300 [Actinidia rufa]1.2e-0653.85Show/hide
Query:  TTEFNRLNALNNLNETPRQQMARYVGGLKSSIQDQLSLKSMKTLSKAIKLAQKAEAHNTRTNTRS
        T EF RL+A NNL E+  QQ+AR+V GL+ +I+DQ+SL++M +L++A+ LA+K E+   RTNTRS
Subjt:  TTEFNRLNALNNLNETPRQQMARYVGGLKSSIQDQLSLKSMKTLSKAIKLAQKAEAHNTRTNTRS

KAA0039086.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]9.1e-4250.63Show/hide
Query:  MATRSDRERMNEGERDFPVVWQAIVEIGNRLDQHFERTNRDIQEMQQSMAQMNANLRGAHPQNHCEQPRARGVERRGGRRGGRQHAGGRQGPIMEEENIS
        M  R DRE+ NE E   P +WQAI +IGNRLD+HFERTNRDIQE+Q+SMAQMNAN RGA PQN           RRG +    ++ GGR GPI+EEEN  
Subjt:  MATRSDRERMNEGERDFPVVWQAIVEIGNRLDQHFERTNRDIQEMQQSMAQMNANLRGAHPQNHCEQPRARGVERRGGRRGGRQHAGGRQGPIMEEENIS

Query:  QSENDDNKN----------------------------------------------------------------TTEFNRLNALNNLNETPRQQMARYVGG
         SENDDN +                                                                TTEF+RLNALNNLNETP QQ+ARYVGG
Subjt:  QSENDDNKN----------------------------------------------------------------TTEFNRLNALNNLNETPRQQMARYVGG

Query:  LKSSIQDQLSLKSMKTLSKAIKLAQKAEAHNTRTNTR
        LKS+IQDQLSLKSMKTLSKAI LAQKAEAHNT+ N R
Subjt:  LKSSIQDQLSLKSMKTLSKAIKLAQKAEAHNTRTNTR

KAA0056127.1 uncharacterized protein E6C27_scaffold697G00040 [Cucumis melo var. makuwa]8.9e-2957.97Show/hide
Query:  MATRSDRERMNEGERDFPVVWQAIVEIGNRLDQHFERTNRDIQEMQQSMAQMNANLRGAHPQN-HCEQPRARGVERRGGRRGGRQHAGGRQGPIMEEENI
        MA R  RE+ NE   D P +WQA  EIGNRLD+HF++TNRDIQE+Q+S+ QMN NLRG  PQN H +QP+ RGVERRGGRRGGRQ+AG R GP++EEEN 
Subjt:  MATRSDRERMNEGERDFPVVWQAIVEIGNRLDQHFERTNRDIQEMQQSMAQMNANLRGAHPQN-HCEQPRARGVERRGGRRGGRQHAGGRQGPIMEEENI

Query:  SQSENDDNKNT--TEFNRLNALNNLNETPRQQMARYVG
        S SENDDN +T   EF +  A+   N+  R++  +  G
Subjt:  SQSENDDNKNT--TEFNRLNALNNLNETPRQQMARYVG

XP_020683016.1 uncharacterized protein LOC110100003 [Dendrobium catenatum]7.3e-0750Show/hide
Query:  MEEENISQSENDDNKNTTEFNRLNALNNLNETPRQQMARYVGGLKSSIQDQLSLKSMKTLSKAIKLAQKAEAHNTR
        M  ++ SQ     +K T EFNRL+A N+LNE+  Q +ARY+GGLK SIQDQL L S+ +L +A+ LA K E    R
Subjt:  MEEENISQSENDDNKNTTEFNRLNALNNLNETPRQQMARYVGGLKSSIQDQLSLKSMKTLSKAIKLAQKAEAHNTR

XP_020700281.1 uncharacterized protein LOC110112409 [Dendrobium catenatum]7.3e-0753.52Show/hide
Query:  MEEENISQSENDDNKNTTEFNRLNALNNLNETPRQQMARYVGGLKSSIQDQLSLKSMKTLSKAIKLAQKAE
        M+ ++ SQ  +  N+ T EF RL+A NNLNET  Q +ARY+GGLK +IQD+L L S+ TLS+AI  A K E
Subjt:  MEEENISQSENDDNKNTTEFNRLNALNNLNETPRQQMARYVGGLKSSIQDQLSLKSMKTLSKAIKLAQKAE

TrEMBL top hitse value%identityAlignment
A0A2I0WQN8 RNA-directed DNA polymerase1.0e-0648.68Show/hide
Query:  MEEENISQSENDDNKNTTEFNRLNALNNLNETPRQQMARYVGGLKSSIQDQLSLKSMKTLSKAIKLAQKAEAHNTR
        M  ++ SQ     ++ T EFNRL+A N+LNE+  Q +ARY+GGLK SIQDQL L S+ +L +A+ LA K E    R
Subjt:  MEEENISQSENDDNKNTTEFNRLNALNNLNETPRQQMARYVGGLKSSIQDQLSLKSMKTLSKAIKLAQKAEAHNTR

A0A5A7TAL8 Transposon Ty3-G Gag-Pol polyprotein4.4e-4250.63Show/hide
Query:  MATRSDRERMNEGERDFPVVWQAIVEIGNRLDQHFERTNRDIQEMQQSMAQMNANLRGAHPQNHCEQPRARGVERRGGRRGGRQHAGGRQGPIMEEENIS
        M  R DRE+ NE E   P +WQAI +IGNRLD+HFERTNRDIQE+Q+SMAQMNAN RGA PQN           RRG +    ++ GGR GPI+EEEN  
Subjt:  MATRSDRERMNEGERDFPVVWQAIVEIGNRLDQHFERTNRDIQEMQQSMAQMNANLRGAHPQNHCEQPRARGVERRGGRRGGRQHAGGRQGPIMEEENIS

Query:  QSENDDNKN----------------------------------------------------------------TTEFNRLNALNNLNETPRQQMARYVGG
         SENDDN +                                                                TTEF+RLNALNNLNETP QQ+ARYVGG
Subjt:  QSENDDNKN----------------------------------------------------------------TTEFNRLNALNNLNETPRQQMARYVGG

Query:  LKSSIQDQLSLKSMKTLSKAIKLAQKAEAHNTRTNTR
        LKS+IQDQLSLKSMKTLSKAI LAQKAEAHNT+ N R
Subjt:  LKSSIQDQLSLKSMKTLSKAIKLAQKAEAHNTRTNTR

A0A5A7UNE4 Uncharacterized protein4.3e-2957.97Show/hide
Query:  MATRSDRERMNEGERDFPVVWQAIVEIGNRLDQHFERTNRDIQEMQQSMAQMNANLRGAHPQN-HCEQPRARGVERRGGRRGGRQHAGGRQGPIMEEENI
        MA R  RE+ NE   D P +WQA  EIGNRLD+HF++TNRDIQE+Q+S+ QMN NLRG  PQN H +QP+ RGVERRGGRRGGRQ+AG R GP++EEEN 
Subjt:  MATRSDRERMNEGERDFPVVWQAIVEIGNRLDQHFERTNRDIQEMQQSMAQMNANLRGAHPQN-HCEQPRARGVERRGGRRGGRQHAGGRQGPIMEEENI

Query:  SQSENDDNKNT--TEFNRLNALNNLNETPRQQMARYVG
        S SENDDN +T   EF +  A+   N+  R++  +  G
Subjt:  SQSENDDNKNT--TEFNRLNALNNLNETPRQQMARYVG

A0A7J0ECX3 CCHC-type domain-containing protein1.3e-0652.31Show/hide
Query:  TTEFNRLNALNNLNETPRQQMARYVGGLKSSIQDQLSLKSMKTLSKAIKLAQKAEAHNTRTNTRS
        T EF RL+A NNL E+  QQ+AR+V GL+ +I+DQ+SL+++ +L++A+ LA+K E+   RTNTRS
Subjt:  TTEFNRLNALNNLNETPRQQMARYVGGLKSSIQDQLSLKSMKTLSKAIKLAQKAEAHNTRTNTRS

A0A7J0H7Q1 Retrotrans_gag domain-containing protein6.0e-0753.85Show/hide
Query:  TTEFNRLNALNNLNETPRQQMARYVGGLKSSIQDQLSLKSMKTLSKAIKLAQKAEAHNTRTNTRS
        T EF RL+A NNL E+  QQ+AR+V GL+ +I+DQ+SL++M +L++A+ LA+K E+   RTNTRS
Subjt:  TTEFNRLNALNNLNETPRQQMARYVGGLKSSIQDQLSLKSMKTLSKAIKLAQKAEAHNTRTNTRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAAGCCCAAAGATCACTTGGGCAATGGCAACTAGAAGTGATAGAGAAAGAATGAATGAGGGAGAGAGAGATTTTCCAGTTGTGTGGCAAGCCATAGTTGAA
ATCGGAAATCGACTCGATCAACATTTCGAGCGAACTAATCGAGACATCCAGGAAATGCAGCAAAGCATGGCCCAAATGAACGCCAATCTTAGAGGTGCGCACCCA
CAAAATCATTGCGAACAACCGCGCGCTAGAGGGGTTGAACGCAGAGGTGGTCGGCGTGGGGGTAGACAACATGCTGGAGGTAGGCAAGGACCTATAATGGAAGAA
GAAAACATCAGTCAATCAGAAAATGATGATAATAAAAATACAACTGAGTTCAATCGATTAAATGCATTGAACAATTTGAATGAAACTCCAAGACAACAAATGGCA
AGATATGTTGGGGGGTTAAAGTCAAGCATTCAAGATCAATTATCTTTAAAGTCCATGAAGACATTGTCAAAAGCAATAAAATTGGCACAAAAGGCAGAGGCACAC
AATACTAGAACAAACACGCGTTCAATATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAAGCCCAAAGATCACTTGGGCAATGGCAACTAGAAGTGATAGAGAAAGAATGAATGAGGGAGAGAGAGATTTTCCAGTTGTGTGGCAAGCCATAGTTGAA
ATCGGAAATCGACTCGATCAACATTTCGAGCGAACTAATCGAGACATCCAGGAAATGCAGCAAAGCATGGCCCAAATGAACGCCAATCTTAGAGGTGCGCACCCA
CAAAATCATTGCGAACAACCGCGCGCTAGAGGGGTTGAACGCAGAGGTGGTCGGCGTGGGGGTAGACAACATGCTGGAGGTAGGCAAGGACCTATAATGGAAGAA
GAAAACATCAGTCAATCAGAAAATGATGATAATAAAAATACAACTGAGTTCAATCGATTAAATGCATTGAACAATTTGAATGAAACTCCAAGACAACAAATGGCA
AGATATGTTGGGGGGTTAAAGTCAAGCATTCAAGATCAATTATCTTTAAAGTCCATGAAGACATTGTCAAAAGCAATAAAATTGGCACAAAAGGCAGAGGCACAC
AATACTAGAACAAACACGCGTTCAATATAG
Protein sequenceShow/hide protein sequence
MLSPKITWAMATRSDRERMNEGERDFPVVWQAIVEIGNRLDQHFERTNRDIQEMQQSMAQMNANLRGAHPQNHCEQPRARGVERRGGRRGGRQHAGGRQGPIMEE
ENISQSENDDNKNTTEFNRLNALNNLNETPRQQMARYVGGLKSSIQDQLSLKSMKTLSKAIKLAQKAEAHNTRTNTRSI