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Lsi03G007340 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G007340
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionextensin-like
Genome locationchr03:9882022..9882489
RNA-Seq ExpressionLsi03G007340
SyntenyLsi03G007340
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD7690474.1 unnamed protein product [Nyctereutes procyonoides]6.8e-0654.31Show/hide
Query:  AAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTP---PPSSPAPAPSPTPVPPLAHHHAPTPGPVSPP---PPQSPSPSPLSVPSPSP
        A AP+P+P+PA SP+PP SP+PP    P   P P P PS    P P   PP SPAPAPSP+P PP +   AP+P P  PP   P  SPSP P   P+PSP
Subjt:  AAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTP---PPSSPAPAPSPTPVPPLAHHHAPTPGPVSPP---PPQSPSPSPLSVPSPSP

Query:  SPSWIDGPPSEAPAPS
        SPS    PPS APAPS
Subjt:  SPSWIDGPPSEAPAPS

KAF6254242.1 hypothetical protein COO60DRAFT_1462786 [Scenedesmus sp. NREL 46B-D3]3.1e-0656.14Show/hide
Query:  APSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS-SPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSPSPSPSWIDG
        +PSPSPSP+ SP PP SPSP    +P   P PPP+PS    P+PPPS SP+P PSP+P PP +   +P+P P SP PP SPSPSP   PSPSPSPS    
Subjt:  APSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS-SPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSPSPSPSWIDG

Query:  P-PSEAPAPSKPKS
        P P  +P+PS P S
Subjt:  P-PSEAPAPSKPKS

XP_011659717.1 vegetative cell wall protein gp1 [Cucumis sativus]1.3e-2867.31Show/hide
Query:  MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPP-PPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQS
        MPHS LLNALLAAALLFSAAA SPSPSP  SPTPPAS SPPWRW PITKPP  PPTPSHET+P+ PP      PSPT VPP AHH  P            
Subjt:  MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPP-PPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQS

Query:  PSPSPLSVPSPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL
        P+  P    SPSPSP+WI  PPSEA +PSK KSD F N FS+VGSVAIGAMAAA L
Subjt:  PSPSPLSVPSPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL

XP_022141995.1 extensin-like [Momordica charantia]1.1e-1961.59Show/hide
Query:  LAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPPPSSPAPAPSPTP--VPPLAHHHAPTPGPVSPPP-PQSPSPSP
        +AAALL SAAA   +P PA SP+P A+PSPPWRWTP  KPP PPT   P+   +PT PPSSPAP+PSPT   VPP      PT  PVSPPP  QSP+P  
Subjt:  LAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPPPSSPAPAPSPTP--VPPLAHHHAPTPGPVSPPP-PQSPSPSP

Query:  LSVPSPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL
           P+ +P+PSWI GPP++A APSK KS+A  NRFS+VGSV IGAMAAA L
Subjt:  LSVPSPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL

XP_038887113.1 anther-specific proline-rich protein APG-like [Benincasa hispida]1.3e-4178.85Show/hide
Query:  MPHSALLNALLAAALLFS-AAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQS
        MPHSALLNALLAAALLFS AAAP+P+PSPA   TPPASPSPPWRWTPITKPPP  TPSHE+KPTPPPSSP P PSPTPV P  HHHAPT  PVS P  +S
Subjt:  MPHSALLNALLAAALLFS-AAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQS

Query:  PSPSPLSVPSPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL
        PS      PSPSPSPSWI  PP EAPAPSK KSDAF+NRFSVV SVAI AMAAALL
Subjt:  PSPSPLSVPSPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL

TrEMBL top hitse value%identityAlignment
A0A0A0K238 Uncharacterized protein6.2e-2967.31Show/hide
Query:  MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPP-PPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQS
        MPHS LLNALLAAALLFSAAA SPSPSP  SPTPPAS SPPWRW PITKPP  PPTPSHET+P+ PP      PSPT VPP AHH  P            
Subjt:  MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPP-PPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQS

Query:  PSPSPLSVPSPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL
        P+  P    SPSPSP+WI  PPSEA +PSK KSD F N FS+VGSVAIGAMAAA L
Subjt:  PSPSPLSVPSPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL

A0A2K3CSD7 Uncharacterized protein5.6e-0648.89Show/hide
Query:  MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS-SPAPAPSPTPVPPLAHHHAPTPGP-VSPPPPQ
        +PH      ++ AALL +AAAP+P+PSPA  P+P  SPSP  + +P   P P P+PS    P+P PS SP+P+PSP+P P  +   +P+P P  SP P  
Subjt:  MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS-SPAPAPSPTPVPPLAHHHAPTPGP-VSPPPPQ

Query:  SPSPSPLSVPSPSPSPSWIDGP-PSEAPAPSKPKS
        SPSPSP   PSPSPSPS    P PS +P+PS   S
Subjt:  SPSPSPLSVPSPSPSPSWIDGP-PSEAPAPSKPKS

A0A419Q988 Cell surface glycoprotein 1 (Fragment)4.3e-0653.1Show/hide
Query:  PSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGP--VSPPPPQSPSPSPLSVPSPSPSPSWIDG
        PSPSP P  SP  P  PSPP    P + PPPPP+PS    P+P P SP P PS  P PP +    P P P   SPPPP SPSP P   PSPSPSP     
Subjt:  PSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGP--VSPPPPQSPSPSPLSVPSPSPSPSWIDG

Query:  PPSEAPAPSKPKS
        PPS  P+PS P S
Subjt:  PPSEAPAPSKPKS

A0A6J1CJN4 extensin-like5.2e-2061.59Show/hide
Query:  LAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPPPSSPAPAPSPTP--VPPLAHHHAPTPGPVSPPP-PQSPSPSP
        +AAALL SAAA   +P PA SP+P A+PSPPWRWTP  KPP PPT   P+   +PT PPSSPAP+PSPT   VPP      PT  PVSPPP  QSP+P  
Subjt:  LAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPPPSSPAPAPSPTP--VPPLAHHHAPTPGPVSPPP-PQSPSPSP

Query:  LSVPSPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL
           P+ +P+PSWI GPP++A APSK KS+A  NRFS+VGSV IGAMAAA L
Subjt:  LSVPSPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL

A0A7J7PQK5 Uncharacterized protein1.5e-0656.14Show/hide
Query:  APSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS-SPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSPSPSPSWIDG
        +PSPSPSP+ SP PP SPSP    +P   P PPP+PS    P+PPPS SP+P PSP+P PP +   +P+P P SP PP SPSPSP   PSPSPSPS    
Subjt:  APSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS-SPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSPSPSPSWIDG

Query:  P-PSEAPAPSKPKS
        P P  +P+PS P S
Subjt:  P-PSEAPAPSKPKS

SwissProt top hitse value%identityAlignment
O10341 Uncharacterized 29.3 kDa protein4.1e-0650.43Show/hide
Query:  PSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS---SPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSPSPSPSWID
        PSP+P+PALSPTP  +PSP    TP   P P PTPS    PTP PS   SP P PSPTP P       PTP P +P P  SP+P+P   PSP+P+PS   
Subjt:  PSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS---SPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSPSPSPSWID

Query:  GP---PSEAPAPSKPKS
         P   PS  P+P+ P S
Subjt:  GP---PSEAPAPSKPKS

Q9FPQ6 Vegetative cell wall protein gp11.7e-0450Show/hide
Query:  SAAAPS---PSPSPALSPTPPASPSPPWRWT---PITKPPPPPTPSHETKPTPP-PSSPAPA-PSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPS
        S A PS   P+P P  SP PP  P PP+      P + P PPP+P+  T PTPP PS P+P  PSP PVPP     +P P P   P P +PSPSP   PS
Subjt:  SAAAPS---PSPSPALSPTPPASPSPPWRWT---PITKPPPPPTPSHETKPTPP-PSSPAPA-PSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPS

Query:  PSPSPSWIDGP-PSEAPAPS
        PSPSPS    P PS +P PS
Subjt:  PSPSPSWIDGP-PSEAPAPS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCACTCTGCCCTTCTCAACGCCCTCTTGGCGGCGGCGCTGCTCTTCTCCGCCGCCGCCCCCTCTCCATCTCCGTCACCAGCCCTGTCCCCCACTCCCCCGGCCTC
CCCTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGCCTCCTCCACCACCAACGCCGTCGCATGAAACCAAGCCCACTCCACCGCCGTCGTCTCCGGCACCAGCACCGT
CGCCTACTCCAGTTCCGCCGCTGGCTCATCACCATGCACCAACTCCGGGTCCAGTTTCCCCGCCGCCGCCGCAGAGCCCTTCTCCGTCCCCTCTGTCAGTACCATCTCCG
TCTCCGTCTCCGTCCTGGATCGACGGACCGCCGTCGGAAGCACCGGCGCCGTCAAAACCGAAGAGCGATGCCTTTCATAATAGATTCTCGGTGGTGGGATCGGTGGCTAT
TGGAGCCATGGCTGCTGCTCTGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCACTCTGCCCTTCTCAACGCCCTCTTGGCGGCGGCGCTGCTCTTCTCCGCCGCCGCCCCCTCTCCATCTCCGTCACCAGCCCTGTCCCCCACTCCCCCGGCCTC
CCCTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGCCTCCTCCACCACCAACGCCGTCGCATGAAACCAAGCCCACTCCACCGCCGTCGTCTCCGGCACCAGCACCGT
CGCCTACTCCAGTTCCGCCGCTGGCTCATCACCATGCACCAACTCCGGGTCCAGTTTCCCCGCCGCCGCCGCAGAGCCCTTCTCCGTCCCCTCTGTCAGTACCATCTCCG
TCTCCGTCTCCGTCCTGGATCGACGGACCGCCGTCGGAAGCACCGGCGCCGTCAAAACCGAAGAGCGATGCCTTTCATAATAGATTCTCGGTGGTGGGATCGGTGGCTAT
TGGAGCCATGGCTGCTGCTCTGCTTTAA
Protein sequenceShow/hide protein sequence
MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSP
SPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL