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Lsi03G007370 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G007370
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA helicase
Genome locationchr03:9936488..9945946
RNA-Seq ExpressionLsi03G007370
SyntenyLsi03G007370
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0005634 - nucleus (cellular component)
GO:0042555 - MCM complex (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0017116 - single-stranded DNA helicase activity (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR031327 - Mini-chromosome maintenance protein
IPR033762 - MCM OB domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031458.1 putative DNA helicase MCM9 isoform X1 [Cucumis melo var. makuwa]4.2e-2398.31Show/hide
Query:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD
        RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRS+LVILKDDLVDLVKAGD
Subjt:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD

XP_008455167.1 PREDICTED: probable DNA helicase MCM9 isoform X1 [Cucumis melo]4.2e-2398.31Show/hide
Query:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD
        RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRS+LVILKDDLVDLVKAGD
Subjt:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD

XP_008455168.1 PREDICTED: probable DNA helicase MCM9 isoform X3 [Cucumis melo]5.4e-2383.1Show/hide
Query:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGDAASSRKDGKMKE
        RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRS+LVILKDDLVDLVKAG   S++    +K+
Subjt:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGDAASSRKDGKMKE

XP_008455169.1 PREDICTED: probable DNA helicase MCM9 isoform X4 [Cucumis melo]4.2e-2398.31Show/hide
Query:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD
        RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRS+LVILKDDLVDLVKAGD
Subjt:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD

XP_016901680.1 PREDICTED: probable DNA helicase MCM9 isoform X2 [Cucumis melo]4.2e-2398.31Show/hide
Query:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD
        RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRS+LVILKDDLVDLVKAGD
Subjt:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD

TrEMBL top hitse value%identityAlignment
A0A0A0K618 DNA helicase2.6e-2396.61Show/hide
Query:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD
        RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRS+L+ILKDDLVDLVKAGD
Subjt:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD

A0A1S3BZV6 DNA helicase2.0e-2398.31Show/hide
Query:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD
        RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRS+LVILKDDLVDLVKAGD
Subjt:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD

A0A1S3C107 DNA helicase2.0e-2398.31Show/hide
Query:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD
        RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRS+LVILKDDLVDLVKAGD
Subjt:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD

A0A1S4E118 DNA helicase2.0e-2398.31Show/hide
Query:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD
        RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRS+LVILKDDLVDLVKAGD
Subjt:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD

A0A5A7SLG2 DNA helicase2.0e-2398.31Show/hide
Query:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD
        RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRS+LVILKDDLVDLVKAGD
Subjt:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD

SwissProt top hitse value%identityAlignment
B8B406 Probable DNA helicase MCM91.3e-1465.52Show/hide
Query:  SKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD
        +K C G +F+ +E S+  HDYQEIKIQE+ Q+LGVGSIPRS+ +IL DDLVD+VKAGD
Subjt:  SKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD

F1QDI9 DNA helicase MCM91.9e-1056.25Show/hide
Query:  PRSKPCEGKSFECLEGS----VVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD
        P  + C    F CL GS        DYQEIKIQE  Q L VGSIPRS+L+IL+DDLVD  K+GD
Subjt:  PRSKPCEGKSFECLEGS----VVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD

F4IFF3 Probable DNA helicase MCM94.2e-1876.27Show/hide
Query:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD
        RSK CEG +F+ ++ +V RHDYQEIKIQE+TQVLGVG IPRSILV+LKDDLVD VKAGD
Subjt:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD

Q69QA6 Probable DNA helicase MCM91.3e-1465.52Show/hide
Query:  SKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD
        +K C G +F+ +E S+  HDYQEIKIQE+ Q+LGVGSIPRS+ +IL DDLVD+VKAGD
Subjt:  SKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD

Q9NXL9 DNA helicase MCM95.5e-1057.81Show/hide
Query:  PRSKPCEGKSFECLEG---SVVR-HDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD
        P  + C+   F CL G   S  R  DYQEIKIQE  Q L VGSIPRS+ VIL+DDLVD  K+GD
Subjt:  PRSKPCEGKSFECLEG---SVVR-HDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD

Arabidopsis top hitse value%identityAlignment
AT2G14050.1 minichromosome maintenance 93.0e-1976.27Show/hide
Query:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD
        RSK CEG +F+ ++ +V RHDYQEIKIQE+TQVLGVG IPRSILV+LKDDLVD VKAGD
Subjt:  RSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAGGTCAAAACCATGTGAAGGGAAAAGTTTTGAGTGTTTGGAAGGTTCTGTCGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGGG
TGTGGGGTCCATTCCTCGTTCCATTCTAGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGATGCTGCCAGCTCCAGAAAGGATGGGAAGATGAAAGAAA
AATTTGAATCTTCAAAGGAAAATCAGGCTAAAACATTTCCAGTTTGGGTTCGAAAGGAGAAGGATATGCTGGACTTAAATCTTAACTCTTTACTAGTGGTTTCAATTCAT
CCCTTCTGCGATGACAAGGCATTGATCAAAATCCGCATTAAAGAGGCTATGTTGGATGAAGGGTACTCGGTGGACATGCTTGAAGAGAGAGATAATGTTGTGAGAGGTAT
TCCAAAGGACATAGCATCGGGGAAAGGAAAATTCTGTTCGGTTGATGTGGAGATTAATGAAAAGACAAATGTGCTCGTTAATAGCCAATTAAATATGACCATTAATTTGG
AGAGAGAAAATAACATTCAGGGTTTTGAGGTGTCTAATGATTGTTTACAGCTGGACACATTTATTGAAGAACCTTCACATCGGTTAGAAGAGCCTAAAGGCAATCACTAC
AACACTTTCCAAGGAGACAGCTCTAAGGATGAGTTCTTGAAGAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCAGGTCAAAACCATGTGAAGGGAAAAGTTTTGAGTGTTTGGAAGGTTCTGTCGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGGG
TGTGGGGTCCATTCCTCGTTCCATTCTAGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGATGCTGCCAGCTCCAGAAAGGATGGGAAGATGAAAGAAA
AATTTGAATCTTCAAAGGAAAATCAGGCTAAAACATTTCCAGTTTGGGTTCGAAAGGAGAAGGATATGCTGGACTTAAATCTTAACTCTTTACTAGTGGTTTCAATTCAT
CCCTTCTGCGATGACAAGGCATTGATCAAAATCCGCATTAAAGAGGCTATGTTGGATGAAGGGTACTCGGTGGACATGCTTGAAGAGAGAGATAATGTTGTGAGAGGTAT
TCCAAAGGACATAGCATCGGGGAAAGGAAAATTCTGTTCGGTTGATGTGGAGATTAATGAAAAGACAAATGTGCTCGTTAATAGCCAATTAAATATGACCATTAATTTGG
AGAGAGAAAATAACATTCAGGGTTTTGAGGTGTCTAATGATTGTTTACAGCTGGACACATTTATTGAAGAACCTTCACATCGGTTAGAAGAGCCTAAAGGCAATCACTAC
AACACTTTCCAAGGAGACAGCTCTAAGGATGAGTTCTTGAAGAGTTAG
Protein sequenceShow/hide protein sequence
MPRSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGDAASSRKDGKMKEKFESSKENQAKTFPVWVRKEKDMLDLNLNSLLVVSIH
PFCDDKALIKIRIKEAMLDEGYSVDMLEERDNVVRGIPKDIASGKGKFCSVDVEINEKTNVLVNSQLNMTINLERENNIQGFEVSNDCLQLDTFIEEPSHRLEEPKGNHY
NTFQGDSSKDEFLKS