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Lsi03G008110 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G008110
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionBED-type domain-containing protein
Genome locationchr03:12214241..12214432
RNA-Seq ExpressionLsi03G008110
SyntenyLsi03G008110
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAD4981694.1 hypothetical protein E3N88_18365 [Mikania micrantha]1.2e-1297.5Show/hide
Query:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        KRIEEASDSFM APLGSGGYSSVGRAPLLQLGRCDYGLDV
Subjt:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV

KAG0447283.1 hypothetical protein HPP92_028386 [Vanilla planifolia]4.0e-2186.67Show/hide
Query:  MIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYG
        MIYFTGEVSGSSPGWPS A+++ KRIEEA DSFM A LGSGGYSSVGRAPLLQLGRCDYG
Subjt:  MIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYG

KAG6773797.1 hypothetical protein POTOM_021122 [Populus tomentosa]2.3e-1371.43Show/hide
Query:  MIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        MIYFTGEV GSS GWPS AKE  K+I  A D F+ +PLGSGGY SVGRA LLQL  CDY LDV
Subjt:  MIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV

KAG6790056.1 hypothetical protein POTOM_006202 [Populus tomentosa]4.3e-1574.6Show/hide
Query:  MIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        MI+FT +V  SS GWPS AKEKN RI+EASDSF+ APL S GYS VGRA  LQLGRCDYGLDV
Subjt:  MIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV

KZN08615.1 hypothetical protein DCAR_001145 [Daucus carota subsp. sativus]1.2e-1297.5Show/hide
Query:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        KRIEEASDSFM APLGSGGYSSVGRAPLLQLGRCDYGLDV
Subjt:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV

TrEMBL top hitse value%identityAlignment
A0A166G702 Uncharacterized protein5.6e-1397.5Show/hide
Query:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        KRIEEASDSFM APLGSGGYSSVGRAPLLQLGRCDYGLDV
Subjt:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV

A0A5N6NLK6 Uncharacterized protein5.6e-1397.5Show/hide
Query:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        KRIEEASDSFM APLGSGGYSSVGRAPLLQLGRCDYGLDV
Subjt:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV

A0A6N2KFV3 Uncharacterized protein ycf681.6e-1295Show/hide
Query:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        KRIEEASDSF+ APLGSGGYSSVGRAPLLQLGRCDYGLDV
Subjt:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV

A0A6N2M157 Uncharacterized protein ycf681.6e-1295Show/hide
Query:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        KRIEEASDSF+ APLGSGGYSSVGRAPLLQLGRCDYGLDV
Subjt:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV

A0A6N2NK86 Uncharacterized protein ycf68 (Fragment)1.6e-1295Show/hide
Query:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        KRIEEASDSF+ APLGSGGYSSVGRAPLLQLGRCDYGLDV
Subjt:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTACTTCACGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTACGCCAAGGAAAAGAATAAAAGAATAGAAGAAGCATCTGACTCCTTCATGCAG
GCCCCACTTGGCTCGGGGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTTACTTCACGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTACGCCAAGGAAAAGAATAAAAGAATAGAAGAAGCATCTGACTCCTTCATGCAG
GCCCCACTTGGCTCGGGGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTCTAA
Protein sequenceShow/hide protein sequence
MIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV