; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G008140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G008140
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionglycine-rich RNA-binding protein 2-like
Genome locationchr03:12283083..12283643
RNA-Seq ExpressionLsi03G008140
SyntenyLsi03G008140
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608571.1 hypothetical protein SDJN03_01913, partial [Cucurbita argyrosperma subsp. sororia]2.0e-5777.53Show/hide
Query:  LVVFAAVIYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW----GGGGGGGGGSGGGGGGWGWGGGGGGW
        LV F   +YGSRAEGL NG      TFLTFSELP+GNAGE  RN+S NTTTVEVSK+N  GGGGGYGWGW    GGGGGGGGG GGGGGGWGWGGGGGGW
Subjt:  LVVFAAVIYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW----GGGGGGGGGSGGGGGGWGWGGGGGGW

Query:  WKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
        WKWGCGGQ KS R  R  GRRKNV+RK++Y+E+DY MGEFA+CMVKGRC+GMRLDCPLHC GPCFYDCRYMCKAHCRR
Subjt:  WKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

KAG7037889.1 hypothetical protein SDJN02_01520, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-5674.73Show/hide
Query:  VVFAAVIYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---------GGGGGGGGGSGGGGGGWGWGGG
        + F   +YGSRAEGL NG      TFLTFSELP+GNAGE  RN+S NTTTVEVSK+N  GGGGGYGWGW         GGGGGGGGG GGGGGGWGWGGG
Subjt:  VVFAAVIYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---------GGGGGGGGGSGGGGGGWGWGGG

Query:  GGGWWKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
        GGGWWKWGCGGQ KS R  R  GRRKNV+RK++Y+E+DY MGEFA+CMVKGRC+GMRLDCPLHC GPCFYDCRYMCKAHCRR
Subjt:  GGGWWKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

XP_008455258.1 PREDICTED: keratin, type II cytoskeletal 1 [Cucumis melo]3.1e-7484.1Show/hide
Query:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRN-GGGGGGGYGWGW------GGGGGGGGGSG
        MGWENPIKL ALV+ A VIYGSR AEGLGNGSMP NVTFLTFSELPQ NAGE RRN+S NT+TVEVSK+N GGGGGGGYGWGW      GGGGGGGGG G
Subjt:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRN-GGGGGGGYGWGW------GGGGGGGGGSG

Query:  GGGGGWGWGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
        GGGGGWGWGGGGGGWWKWGCGG+ K E+VGRRD  GRRKNV RKKMY+EKDYRMGEFAQCMVKGRC+GMRLDCPLHC GPCFYDCRYMCKAHC R
Subjt:  GGGGGWGWGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

XP_011659711.1 keratin, type II cytoskeletal 2 epidermal [Cucumis sativus]2.0e-7384.29Show/hide
Query:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGG
        MGWENPIKL ALV+ A VI GSR AEGLGNGSMP NVTFLTFSELPQ NAGE RRN+S N+TTVEVSK+NGGGGGGGYGWGW   GGGGGGGGG GGGGG
Subjt:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGG

Query:  GWGWGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
        GWGWGGGGGGWWKWGCGGQ KSERVGRRD  G  +NV  K+MY EKDYRMGEFAQCMVKGRC+GMRLDCPLHC GPCFYDCRYMCKAHC R
Subjt:  GWGWGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

XP_022940700.1 glycine-rich RNA-binding protein 2-like [Cucurbita moschata]7.3e-5578.24Show/hide
Query:  IYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGGGWGWGGGGGGWWKWGCGGQ
        +YGSRAEGL NG      TFLTFSELP GNAGE  RN+S NTTTVEVSK+N  GGGGGYGWGW   GGGGGGGGG GGGGGGWGWGGGGGGWWKWGCGGQ
Subjt:  IYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGGGWGWGGGGGGWWKWGCGGQ

Query:  RKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
         KS R  R  GRRKNV+RK++Y+E+DY +GEFA+CMVKGRC+GMRLDCPLHC GPCFYDCR+MCKAHCRR
Subjt:  RKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

TrEMBL top hitse value%identityAlignment
A0A0A0K766 Uncharacterized protein9.9e-7484.29Show/hide
Query:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGG
        MGWENPIKL ALV+ A VI GSR AEGLGNGSMP NVTFLTFSELPQ NAGE RRN+S N+TTVEVSK+NGGGGGGGYGWGW   GGGGGGGGG GGGGG
Subjt:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGG

Query:  GWGWGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
        GWGWGGGGGGWWKWGCGGQ KSERVGRRD  G  +NV  K+MY EKDYRMGEFAQCMVKGRC+GMRLDCPLHC GPCFYDCRYMCKAHC R
Subjt:  GWGWGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

A0A1S3C029 keratin, type II cytoskeletal 11.5e-7484.1Show/hide
Query:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRN-GGGGGGGYGWGW------GGGGGGGGGSG
        MGWENPIKL ALV+ A VIYGSR AEGLGNGSMP NVTFLTFSELPQ NAGE RRN+S NT+TVEVSK+N GGGGGGGYGWGW      GGGGGGGGG G
Subjt:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRN-GGGGGGGYGWGW------GGGGGGGGGSG

Query:  GGGGGWGWGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
        GGGGGWGWGGGGGGWWKWGCGG+ K E+VGRRD  GRRKNV RKKMY+EKDYRMGEFAQCMVKGRC+GMRLDCPLHC GPCFYDCRYMCKAHC R
Subjt:  GGGGGWGWGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

A0A2R6RMQ2 Bowman-Birk type proteinase inhibitor DE-4 like9.4e-3252.81Show/hide
Query:  CALVVFAAVIYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGWGGGG--GGGGGSGGGGGGWGWGGGGGGW
        C  ++ +  I G    G  +G   T           Q NA   ++N +     V  + +  GG GGG GWGWGGGG  GGGGG GGGGGGWGWGGGGGGW
Subjt:  CALVVFAAVIYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGWGGGG--GGGGGSGGGGGGWGWGGGGGGW

Query:  WKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
        W WGC   RK++        R +V++K+ +  KDY+MGEFAQCM++GRC+GMRLDCPLHC GPCFYDC+YMCKAHCRR
Subjt:  WKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

A0A540M1B0 Uncharacterized protein4.2e-3247.98Show/hide
Query:  KLCALVVFAAVIYGSRAEG--LGNGSMPT--------NVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKR----------------------NGGGGGG
        KL  L+     I GS A G  L NG+  +          + L  +E+P    GE+R   +  TT V+++ +                        GGGGG
Subjt:  KLCALVVFAAVIYGSRAEG--LGNGSMPT--------NVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKR----------------------NGGGGGG

Query:  GYGWGWGGGGGGGG-------GSGGGGGGWGWGGGGG--GWWKWGCGGQRKSERVGRRDGRRKNVN----RKKMYDEKDYRMGEFAQCMVKGRCKGMRLD
        GY WGWGGGGGGGG       G+GG GGGWGWGGGGG  GWWKWGCGG +   + GR  GRR + +     K+ +DE++Y +GEFAQCM KGRCKGMRLD
Subjt:  GYGWGWGGGGGGGG-------GSGGGGGGWGWGGGGG--GWWKWGCGGQRKSERVGRRDGRRKNVN----RKKMYDEKDYRMGEFAQCMVKGRCKGMRLD

Query:  CPLHCDGPCFYDCRYMCKAHCRR
        CPLHC GPCFYDC++MCKAHCRR
Subjt:  CPLHCDGPCFYDCRYMCKAHCRR

A0A6J1FRC8 glycine-rich RNA-binding protein 2-like3.5e-5578.24Show/hide
Query:  IYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGGGWGWGGGGGGWWKWGCGGQ
        +YGSRAEGL NG      TFLTFSELP GNAGE  RN+S NTTTVEVSK+N  GGGGGYGWGW   GGGGGGGGG GGGGGGWGWGGGGGGWWKWGCGGQ
Subjt:  IYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGGGWGWGGGGGGWWKWGCGGQ

Query:  RKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
         KS R  R  GRRKNV+RK++Y+E+DY +GEFA+CMVKGRC+GMRLDCPLHC GPCFYDCR+MCKAHCRR
Subjt:  RKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G75550.1 glycine-rich protein5.6e-2152.78Show/hide
Query:  NNSDNTTTVEV----SKRNGGGGGGGYGWGW-------GGGGGGGGGSGGGGGGWGW--GGGGGGWWKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKD
        NN +N+TT  V     KR+  GG G Y WGW       GGGGGGGGG GGGGGGWGW  GGGGGGW+KWGCGG  K +    R+GR + V R        
Subjt:  NNSDNTTTVEV----SKRNGGGGGGGYGWGW-------GGGGGGGGGSGGGGGGWGW--GGGGGGWWKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKD

Query:  YRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
            E+A+C  +G+C G RL+CP HC G CFYDC ++CK HCRR
Subjt:  YRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTGGGAAAATCCAATTAAATTATGTGCTTTGGTGGTTTTTGCAGCAGTGATTTATGGGTCAAGAGCTGAGGGTTTGGGAAATGGAAGTATGCCCACAAATGTCAC
TTTCTTGACATTCTCAGAGCTGCCACAGGGGAATGCAGGGGAGATCAGAAGAAACAATTCAGACAATACTACAACGGTTGAGGTCAGCAAGCGGAATGGGGGTGGCGGTG
GCGGTGGCTATGGATGGGGATGGGGTGGAGGCGGCGGTGGTGGTGGAGGAAGTGGTGGTGGTGGTGGTGGATGGGGATGGGGAGGAGGTGGAGGTGGGTGGTGGAAATGG
GGTTGCGGAGGACAGCGAAAATCCGAGAGAGTTGGACGACGTGACGGACGGAGAAAAAATGTTAACCGAAAGAAAATGTACGACGAGAAAGATTATAGAATGGGAGAATT
TGCACAATGTATGGTGAAAGGAAGATGCAAAGGAATGAGATTAGACTGCCCACTTCATTGCGACGGACCTTGCTTTTATGATTGTCGATACATGTGTAAAGCTCACTGTC
GACGCTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTGGGAAAATCCAATTAAATTATGTGCTTTGGTGGTTTTTGCAGCAGTGATTTATGGGTCAAGAGCTGAGGGTTTGGGAAATGGAAGTATGCCCACAAATGTCAC
TTTCTTGACATTCTCAGAGCTGCCACAGGGGAATGCAGGGGAGATCAGAAGAAACAATTCAGACAATACTACAACGGTTGAGGTCAGCAAGCGGAATGGGGGTGGCGGTG
GCGGTGGCTATGGATGGGGATGGGGTGGAGGCGGCGGTGGTGGTGGAGGAAGTGGTGGTGGTGGTGGTGGATGGGGATGGGGAGGAGGTGGAGGTGGGTGGTGGAAATGG
GGTTGCGGAGGACAGCGAAAATCCGAGAGAGTTGGACGACGTGACGGACGGAGAAAAAATGTTAACCGAAAGAAAATGTACGACGAGAAAGATTATAGAATGGGAGAATT
TGCACAATGTATGGTGAAAGGAAGATGCAAAGGAATGAGATTAGACTGCCCACTTCATTGCGACGGACCTTGCTTTTATGATTGTCGATACATGTGTAAAGCTCACTGTC
GACGCTCCTAA
Protein sequenceShow/hide protein sequence
MGWENPIKLCALVVFAAVIYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGWGGGGGGGGGSGGGGGGWGWGGGGGGWWKW
GCGGQRKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRRS