CuGenDBv2

Gene ID	Lsi03G008600
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	protein IQ-DOMAIN 1
Genome location	chr03:14171976..14177389
RNA-Seq Expression	Lsi03G008600
Synteny	Lsi03G008600
Gene Ontology terms	GO:0005634 - nucleus (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004141323.1 protein IQ-DOMAIN 1 [Cucumis sativus]

9.3e-32

86.59

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Query:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        KLGSTKTKKW+LWRSPSGDL+ AWKGYK G+KAASEGSDSPR ADSFTA VAT+LRA PRNFRVV QEWAAIRIQ AFRGFL
Subjt:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

XP_008452736.1 PREDICTED: protein IQ-DOMAIN 1 [Cucumis melo]

2.7e-31

85.37

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Query:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        KLG TKTKKW+LWRSPSGDL+ AWKGYK G+KAASEGSDSPR ADSFTA VAT+LRA PRNFRVV QEWAAIRIQ AFRGFL
Subjt:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

XP_022132644.1 protein IQ-DOMAIN 1 [Momordica charantia]

5.3e-27

80.49

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Query:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        KLGS K KKWRLWRSPSGDL+ AWKGYK  +KAASEGS+SPR ADSFTA VAT+LRA P+NFR V QEWAAIRIQ AFRGFL
Subjt:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

XP_023536372.1 protein IQ-DOMAIN 1-like [Cucurbita pepo subsp. pepo]

1.2e-26

79.49

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Query:  TKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        +KTKKWRLWRSPSGDL+  WKGYK  +KAASEGSDSPR  DSFTA VA +LRA P+NFRVV QEWAAIRIQ AFRGFL
Subjt:  TKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

XP_038896142.1 protein IQ-DOMAIN 1 [Benincasa hispida]

6.0e-31

84.15

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Query:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        KLG+TKTKKWRLWRSPSGDL+ AWKGYK G+KAASEGSDSPR ADSFTA VAT+LRA PRNF+ V QEWAAIRIQ AFRGFL
Subjt:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2S3 Uncharacterized protein

4.5e-32

86.59

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Query:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        KLGSTKTKKW+LWRSPSGDL+ AWKGYK G+KAASEGSDSPR ADSFTA VAT+LRA PRNFRVV QEWAAIRIQ AFRGFL
Subjt:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

A0A1S3BVC1 protein IQ-DOMAIN 1

1.3e-31

85.37

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Query:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        KLG TKTKKW+LWRSPSGDL+ AWKGYK G+KAASEGSDSPR ADSFTA VAT+LRA PRNFRVV QEWAAIRIQ AFRGFL
Subjt:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

A0A5D3D949 Protein IQ-DOMAIN 1

1.3e-31

85.37

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Query:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        KLG TKTKKW+LWRSPSGDL+ AWKGYK G+KAASEGSDSPR ADSFTA VAT+LRA PRNFRVV QEWAAIRIQ AFRGFL
Subjt:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

A0A6J1BTP8 protein IQ-DOMAIN 1

2.6e-27

80.49

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Query:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        KLGS K KKWRLWRSPSGDL+ AWKGYK  +KAASEGS+SPR ADSFTA VAT+LRA P+NFR V QEWAAIRIQ AFRGFL
Subjt:  KLGSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

A0A6J1INT7 protein IQ-DOMAIN 1-like

5.7e-27

79.49

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Query:  TKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        +KTKKWRLWRSPSGDL+  WKGYK  +KAASEGSDSPR  DSFTA VA +LRA P+NFRVV QEWAAIRIQ AFRGFL
Subjt:  TKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

SwissProt top hits

e value

%identity

Alignment

O64852 Protein IQ-DOMAIN 6

1.7e-15

52.5

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Query:  GSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        G+ K KKW+LWR+ S D   +WKG++  +++ S+G DS  V   ++A VAT+LRA P++F+ V +EWAAIRIQ AFRGFL
Subjt:  GSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

Q2NND9 Protein IQ-DOMAIN 7

1.4e-09

44.16

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Query:  KKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVA--DSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        KKW+LWR  S  L  +    +  Y A+S GS+ P  +  ++FT  +A ++RA PR+F +V +EWA+ RIQ AFR FL
Subjt:  KKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVA--DSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

Q9CAI2 Protein IQ-DOMAIN 8

2.2e-12

51.25

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Query:  KKWRLWRSPSGDLTPAWKGYKV---GYKAASEGSDSPRVA--DSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        KKW+LWR+ S  L  + KG+K     Y   S GSD P  +  DSFTA VA ++RA P++F +V +EWAA RIQ AFR FL
Subjt:  KKWRLWRSPSGDLTPAWKGYKV---GYKAASEGSDSPRVA--DSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G17480.1 IQ-domain 7

9.6e-11

44.16

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Query:  KKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVA--DSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        KKW+LWR  S  L  +    +  Y A+S GS+ P  +  ++FT  +A ++RA PR+F +V +EWA+ RIQ AFR FL
Subjt:  KKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVA--DSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

AT1G72670.1 IQ-domain 8

1.6e-13

51.25

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Query:  KKWRLWRSPSGDLTPAWKGYKV---GYKAASEGSDSPRVA--DSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        KKW+LWR+ S  L  + KG+K     Y   S GSD P  +  DSFTA VA ++RA P++F +V +EWAA RIQ AFR FL
Subjt:  KKWRLWRSPSGDLTPAWKGYKV---GYKAASEGSDSPRVA--DSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

AT2G26180.1 IQ-domain 6

1.2e-16

52.5

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Query:  GSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL
        G+ K KKW+LWR+ S D   +WKG++  +++ S+G DS  V   ++A VAT+LRA P++F+ V +EWAAIRIQ AFRGFL
Subjt:  GSTKTKKWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFL

Sequences

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CDS sequence

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mRNA sequence

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ATGTTCTCCCTTCACTGCCCTACTGCCGAAGCGTTCTCGTTTCGTGCAAAGCTTTGTTTCATTTCGTCTTCGGTTCAGAGGTTTGTTAGTTTGCGTTCGTCTGTTGTTGG
CTTAAGTCTGCCACAAAGTGCTCTTGCACCACTTCTTGTTCGACCAGCAGCGATATTGTCTTCTTCTCTGTCTTTGACCAATAAGAAGTTGTCATATCTGGAGGATGAAA
GGGTGATTGCCCACCGTGAGAATGGAGCTTTAGATTACGATCGGTTCGATGGTACAAAGATGATTATTCTAGGTATTCATGGTTGTAAGTTGGGTAGTACTAAAACTAAG
AAATGGAGGCTATGGAGAAGCCCATCAGGGGATTTGACCCCTGCTTGGAAGGGTTATAAAGTGGGATACAAAGCAGCTTCTGAAGGATCTGATTCTCCTAGAGTGGCTGA
TTCTTTTACCGCTGTCGTCGCCACCATCCTCCGTGCTGCACCAAGGAATTTCAGGGTTGTCCACCAAGAATGGGCTGCAATTAGGATCCAAATTGCATTTCGTGGTTTCT
TGGTACACCTCTTTGTTCTAGGATCCAAATTGCATTTCGTGGTTTCTTGATCCAGTGGCGCCACTGTTCCAATTCACGTTCACTACCACCGTCTGTCGTCGACTCTACCA
TCCGCTGCCATAAGTTGCCATGTCTCGCCAGATTTTGATTGGATCTTGTCGAAATCTTTATTTTGATTAAGCTCATGTTATTTGGAAAGGATTGTTGGGTATCTTGAATA
CACAATAACTTTTGGCTTAATTGGTTGATACCCATTATGTTTTTGAATTTAGGTCGAAGTTTCAGGGTGTTAAGAACCGTGTCCCATTAGTTTGGCATGAATACTTGTGT
TAATTGGATTTTAGACTTGGATCTAAAACCCCCATGGTTTATGTCTAGATTGGATTTTGTATTTGAAGCTCGAGTGTAGTTCCAGTTAAGTCGACACTTTGGGGCTTGAT
TCAAGATTTCATTAGGCAAGGAAGAGGACAAATTTGCTTGATTGGGCTTAAACTTGAAGTAAGTGGCACTACTACTGGAATGCCTTGGAGCCAGGCGCCCTAGATAAGAT
AATATTATTATGTTGGATAAGTTCCAACTGCTTGTTATGGGATGTTTGAGATAATTTGCTATGTTTTTGTGTTGTGATGATATGTTTGTGGTATGAAATCATATTGGTTA
GGTACGATTTATGAAGGGAATGAAAAATATGGTCATGTTTGGACTTTGATTCGTGATATAGGACCCATTGAATATATGTTGCTTGTTAGTTAAGTAGGTGATGATCTACT
CTCTTATCAGTATTATGTATAACCATGAAGCGAAGGGTTCTCTACAATGATATGACCATCAACCTACTACGTATTTTATATACTCACCCTTTATTACATTATGTTTTTCA
AGTAAAGGAAAGGACATAGCGACACATGATAAAAAGAATTT

Protein sequence

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MFSLHCPTAEAFSFRAKLCFISSSVQRFVSLRSSVVGLSLPQSALAPLLVRPAAILSSSLSLTNKKLSYLEDERVIAHRENGALDYDRFDGTKMIILGIHGCKLGSTKTK
KWRLWRSPSGDLTPAWKGYKVGYKAASEGSDSPRVADSFTAVVATILRAAPRNFRVVHQEWAAIRIQIAFRGFLVHLFVLGSKLHFVVS

Lsi03G008600 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome