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Lsi03G008810 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G008810
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein Ycf2
Genome locationchr03:15267444..15275028
RNA-Seq ExpressionLsi03G008810
SyntenyLsi03G008810
Gene Ontology termsGO:0009570 - chloroplast stroma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AJW59550.1 Ycf2 [Ilex dumosa]2.7e-1389.8Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
ALI91624.1 Ycf2, partial [Oecopetalum mexicanum]2.7e-1389.8Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
AMK95960.1 hypothetical chloroplast RF21 [Saltugilia latimeri]2.7e-1389.8Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
QHE50375.1 hypothetical protein RF2 [Pittosporopsis kerrii]2.7e-1389.8Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
YP_010138913.1 Ycf2 [Ilex vomitoria]2.7e-1389.8Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
TrEMBL top hitse value%identityAlignment
A0A1B1NHJ5 Protein Ycf21.3e-1389.8Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
A0A649UJW6 Protein Ycf21.3e-1389.8Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
A0A7T7A9M9 Ycf21.3e-1389.8Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
A0A7U0KMH9 Ycf21.3e-1389.8Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
A0A7U0KQP2 Ycf21.3e-1389.8Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
SwissProt top hitse value%identityAlignment
A0A379 Protein Ycf23.0e-1587.76Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KKLT LLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
A8W3G3 Protein Ycf26.7e-1585.71Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KKLT LLYLLSC+AG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
P32033 Protein Ycf26.7e-1585.71Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KKLT LLYLLSC+AG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
Q0G9Q1 Protein Ycf26.7e-1585.71Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KKLT LLYLLSCSAG SV QDL SLPGPDE+NGITSYGLVENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
Q0ZIV6 Protein Ycf23.0e-1587.76Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KKLT LLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core1.7e-1379.59Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KK T LLYLLSCSAG SV QDL SLP PDEKN ITSYG VENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core1.7e-1379.59Show/hide
Query:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL
        S+KK T LLYLLSCSAG SV QDL SLP PDEKN ITSYG VENDSDL+
Subjt:  SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAACACGCTTTTTCGACCGCGGTGGTATGTTTGTCGGGCCCTCTCCTTGTTCCGTGAAGAAATTAACAAGACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCA
TCGGTTGTTCAAGACCTTTCGTCTCTACCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTATTAGATGACAATGTA
ATCAAACTCTAG
mRNA sequenceShow/hide mRNA sequence
GGAACACGCTTTTTCGACCGCGGTGGTATGTTTGTCGGGCCCTCTCCTTGTTCCGTGAAGAAATTAACAAGACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCA
TCGGTTGTTCAAGACCTTTCGTCTCTACCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTATTAGATGACAATGTA
ATCAAACTCTAG
Protein sequenceShow/hide protein sequence
GTRFFDRGGMFVGPSPCSVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLLDDNVIKL