CuGenDBv2

Gene ID	Lsi03G008930
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Cyclin-T1-5
Genome location	chr03:15989274..15994445
RNA-Seq Expression	Lsi03G008930
Synteny	Lsi03G008930
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0032786 - positive regulation of DNA-templated transcription, elongation (biological process) GO:0045737 - positive regulation of cyclin-dependent protein serine/threonine kinase activity (biological process) GO:0051301 - cell division (biological process) GO:0008024 - cyclin/CDK positive transcription elongation factor complex (cellular component) GO:0061575 - cyclin-dependent protein serine/threonine kinase activator activity (molecular function)
InterPro domains	IPR036915 - Cyclin-like superfamily IPR043198 - Cyclin/Cyclin-like subunit Ssn8

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7012586.1 Cyclin-T1-5, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-19

92.59

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Query:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        +QDKQDEAG WY+SRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMR KV
Subjt:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

XP_008459075.1 PREDICTED: LOW QUALITY PROTEIN: cyclin-T1-5 [Cucumis melo]

6.2e-20

94.44

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Query:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        +Q+KQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMR KV
Subjt:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

XP_022994766.1 cyclin-T1-3-like isoform X1 [Cucurbita maxima]

1.8e-19

92.59

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Query:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        +QDKQDEAG WY+SRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMR KV
Subjt:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

XP_038894172.1 cyclin-T1-5-like isoform X1 [Benincasa hispida]

6.2e-20

94.44

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Query:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        +Q+KQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMR KV
Subjt:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

XP_038894173.1 cyclin-T1-4-like isoform X2 [Benincasa hispida]

6.2e-20

94.44

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Query:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        +Q+KQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMR KV
Subjt:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M1B5 Uncharacterized protein

1.1e-19

92.59

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Query:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        +Q+ QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMR KV
Subjt:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

A0A1S3CAJ8 LOW QUALITY PROTEIN: cyclin-T1-5

3.0e-20

94.44

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Query:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        +Q+KQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMR KV
Subjt:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

A0A6J1JWT1 cyclin-T1-5-like isoform X2

8.8e-20

92.59

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Query:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        +QDKQDEAG WY+SRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMR KV
Subjt:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

A0A6J1K036 cyclin-T1-3-like isoform X1

8.8e-20

92.59

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Query:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        +QDKQDEAG WY+SRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMR KV
Subjt:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

A0A6J1K620 cyclin-T1-4-like isoform X3

8.8e-20

92.59

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Query:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        +QDKQDEAG WY+SRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMR KV
Subjt:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

SwissProt top hits

e value

%identity

Alignment

Q2QQS5 Cyclin-T1-4

3.9e-17

77.19

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Query:  QDKQDEAGR----WYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        Q + +E G     WY SRKEIEENSPSRRDGIDLKKE+YLRKSYCTFLQDLGMR KV
Subjt:  QDKQDEAGR----WYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

Q2RAC5 Cyclin-T1-3

9.7e-16

76.79

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Query:  DKQDEAGR----WYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        D+  E G+    WY SRKEIEENS SRRDGIDLKKE+YLRKSYCTFLQDLGMR KV
Subjt:  DKQDEAGR----WYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

Q56YF8 Cyclin-T1-2

1.4e-11

71.43

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Query:  DEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        DE   W+ SR+EIE NSPSRRDGIDLK ET LR SYCTFL+ LG R KV
Subjt:  DEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

Q8GYM6 Cyclin-T1-4

1.6e-18

81.48

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Query:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        + +KQDE  RWY  RKEIEENSPSR D IDLKKETYLRKSYCTFLQDLGMR KV
Subjt:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

Q9FKE6 Cyclin-T1-5

9.3e-19

81.48

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Query:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        + +KQ+E  RWY  RKEIEENSPSR DGIDLKKETYLRKSYCTFLQDLGMR KV
Subjt:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

Arabidopsis top hits

e value

%identity

Alignment

AT1G27630.1 cyclin T 1;3

1.0e-12

62.26

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Query:  QDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        +  Q E  +WY SR+EIE  SPSR+DGIDL KE++LR SYCTFLQ LGM+  V
Subjt:  QDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

AT4G19560.1 Cyclin family protein

1.0e-12

71.43

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Query:  DEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        DE   W+ SR+EIE NSPSRRDGIDLK ET LR SYCTFL+ LG R KV
Subjt:  DEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

AT4G19600.1 Cyclin family protein

1.1e-19

81.48

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Query:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        + +KQDE  RWY  RKEIEENSPSR D IDLKKETYLRKSYCTFLQDLGMR KV
Subjt:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

AT5G45190.1 Cyclin family protein

6.6e-20

81.48

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Query:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        + +KQ+E  RWY  RKEIEENSPSR DGIDLKKETYLRKSYCTFLQDLGMR KV
Subjt:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

AT5G45190.2 Cyclin family protein

1.5e-19

79.63

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Query:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV
        + +KQ+E  RWY  RKEIEENSPSR DGIDLKKETYLRKSYCTFLQDLGMR K+
Subjt:  AQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKV

Sequences

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CDS sequence

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GGTTCAGAGGATATTTGCTCTTCAACAGCAAAGTTTGCGTTCGTCTGTTGTCGGCTTGAGGCTCAAGATAAGCAAGATGAAGCAGGTCGTTGGTATATGTCCAGAAAGGA
AATTGAAGAAAATTCCCCATCAAGAAGAGATGGTATTGACTTGAAGAAGGAGACTTACTTACGGAAGTCATACTGCACATTTCTGCAAGATCTGGGCATGAGGTTCAAAG
TTTATGCAAGATTGATTCCGAAGGAAAGGCAAGAAAAGTTGTTGGTTGATCTTGTTCGTTCGAGATTTGTAGAGCATGAAGAAAGCTCAGATCAATTTTGGCGCGCAGGT
CCAAAAGTCTTGGGAGGAAGTTGCGGTAACGAGGGTGTTGATGGCATGAAAACAAAATCAAAGGAATCTGAAGATGAAGTGTTTTCAGATGACGAGAAGAAGCAACATGG
GAGAGTGAAGATCAAATGA

mRNA sequence

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Protein sequence

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GSEDICSSTAKFAFVCCRLEAQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRFKVYARLIPKERQEKLLVDLVRSRFVEHEESSDQFWRAG
PKVLGGSCGNEGVDGMKTKSKESEDEVFSDDEKKQHGRVKIK

Lsi03G008930 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome