CuGenDBv2

Gene ID	Lsi03G009030
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	general transcription factor 3C polypeptide 5-like
Genome location	chr03:16558051..16561354
RNA-Seq Expression	Lsi03G009030
Synteny	Lsi03G009030
Gene Ontology terms	GO:0006384 - transcription initiation from RNA polymerase III promoter (biological process) GO:0000127 - transcription factor TFIIIC complex (cellular component) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR040454 - Transcription factor IIIC subunit Tfc1/Sfc1

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004142476.1 general transcription factor 3C polypeptide 5 isoform X2 [Cucumis sativus]

1.2e-49

71.1

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Query:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKLDANYAEEDEEEDGLGVESD------
        +YESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALL AASESFEKLKR DRKDC+KVDQ  EHEANA   +DDKLDA+YAEED EEDG+GVES       
Subjt:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKLDANYAEEDEEEDGLGVESD------

Query:  --------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD
                            L M+DVSRTHLQELFGSF    EDGEK MDDGDGS++EYQIYEQDTDMDSD+D
Subjt:  --------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD

XP_008465056.1 PREDICTED: general transcription factor 3C polypeptide 5-like isoform X1 [Cucumis melo]

9.5e-50

70.06

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Query:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKL-DANYAEED---EEEDGLGVESD--
        +YESGWFS+R LNCIRQRIMMRFLSVFPTAGAEALL AASE+FEKLKREDRKDC+KVDQ  EHEANA VI+DDKL DA+YAEED   +EEDGLGVES   
Subjt:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKL-DANYAEED---EEEDGLGVESD--

Query:  ------------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD
                                L+M+D+SRTHLQELFGSF    EDGEK MDDGDGS++EYQIYEQDTDMDSDDD
Subjt:  ------------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD

XP_008465058.1 PREDICTED: general transcription factor 3C polypeptide 5-like isoform X2 [Cucumis melo]

9.5e-50

70.06

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Query:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKL-DANYAEED---EEEDGLGVESD--
        +YESGWFS+R LNCIRQRIMMRFLSVFPTAGAEALL AASE+FEKLKREDRKDC+KVDQ  EHEANA VI+DDKL DA+YAEED   +EEDGLGVES   
Subjt:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKL-DANYAEED---EEEDGLGVESD--

Query:  ------------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD
                                L+M+D+SRTHLQELFGSF    EDGEK MDDGDGS++EYQIYEQDTDMDSDDD
Subjt:  ------------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD

XP_011655959.1 general transcription factor 3C polypeptide 5 isoform X1 [Cucumis sativus]

5.5e-50

72.41

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Query:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVIN-DDKLDANYAEEDEEEDGLGVESD-----
        +YESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALL AASESFEKLKR DRKDC+KVDQ  EHEANAAV N DDKLDA+YAEED EEDG+GVES      
Subjt:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVIN-DDKLDANYAEEDEEEDGLGVESD-----

Query:  ---------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD
                             L M+DVSRTHLQELFGSF    EDGEK MDDGDGS++EYQIYEQDTDMDSD+D
Subjt:  ---------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD

XP_038888323.1 transcription factor tau subunit sfc1-like [Benincasa hispida]

1.4e-56

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Query:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKLDANYAEEDEE--EDGLGVESD----
        +YESGWFSLRI+NCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRK+C+KVDQGGEHE NAAVINDDKL+ANYAEEDEE  EDGLGVES     
Subjt:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKLDANYAEEDEE--EDGLGVESD----

Query:  ----------------------LNMDDVSRTHLQELFGSF----EDGEKMDDGDGSEDEYQIYEQDTDMDSDDDQS
                              LNM++VSRTHLQELFGSF    EDG KMDDGDGSE+EYQIYEQDTDMDSDDD S
Subjt:  ----------------------LNMDDVSRTHLQELFGSF----EDGEKMDDGDGSEDEYQIYEQDTDMDSDDDQS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KV91 Uncharacterized protein

6.0e-50

71.1

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Query:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKLDANYAEEDEEEDGLGVESD------
        +YESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALL AASESFEKLKR DRKDC+KVDQ  EHEANA   +DDKLDA+YAEED EEDG+GVES       
Subjt:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKLDANYAEEDEEEDGLGVESD------

Query:  --------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD
                            L M+DVSRTHLQELFGSF    EDGEK MDDGDGS++EYQIYEQDTDMDSD+D
Subjt:  --------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD

A0A1S3CMW8 general transcription factor 3C polypeptide 5-like isoform X2

4.6e-50

70.06

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Query:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKL-DANYAEED---EEEDGLGVESD--
        +YESGWFS+R LNCIRQRIMMRFLSVFPTAGAEALL AASE+FEKLKREDRKDC+KVDQ  EHEANA VI+DDKL DA+YAEED   +EEDGLGVES   
Subjt:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKL-DANYAEED---EEEDGLGVESD--

Query:  ------------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD
                                L+M+D+SRTHLQELFGSF    EDGEK MDDGDGS++EYQIYEQDTDMDSDDD
Subjt:  ------------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD

A0A1S4E516 general transcription factor 3C polypeptide 5-like isoform X1

4.6e-50

70.06

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Query:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKL-DANYAEED---EEEDGLGVESD--
        +YESGWFS+R LNCIRQRIMMRFLSVFPTAGAEALL AASE+FEKLKREDRKDC+KVDQ  EHEANA VI+DDKL DA+YAEED   +EEDGLGVES   
Subjt:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKL-DANYAEED---EEEDGLGVESD--

Query:  ------------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD
                                L+M+D+SRTHLQELFGSF    EDGEK MDDGDGS++EYQIYEQDTDMDSDDD
Subjt:  ------------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD

A0A5A7VAR4 Ty3/gypsy retrotransposon protein

3.9e-49

70.22

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Query:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAA-VINDDKL-DANYAEED---EEEDGLGVESD-
        +YESGWFS+R LNCIRQRIMMRFLSVFPTAGAEALL AASE+FEKLKREDRKDC+KVDQ  EHEANAA VI+DDKL DA+YAEED   +EEDGLGVES  
Subjt:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAA-VINDDKL-DANYAEED---EEEDGLGVESD-

Query:  -------------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD
                                 L+M+D+SRTHLQELFGSF    EDGEK MDDGDGS++EYQIYEQDTDMDSDDD
Subjt:  -------------------------LNMDDVSRTHLQELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD

A0A6J1JKL2 general transcription factor 3C polypeptide 5-like

4.7e-47

66.09

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Query:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKLDANYAEEDEEEDGLGVESD------
        +YESGWFSLRILNC+RQRIMMRFL VFPTA AE LLRAASE+FEKLKR+ +K C KVD GG+H+ANAAVINDDKL+ N  EED  EDGL VES       
Subjt:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKLDANYAEEDEEEDGLGVESD------

Query:  --------------------LNMDDVSRTHLQELFGSF----EDGEKMDDGDGSEDEYQIYEQDTDMDSDDDQS
                            LNMDDVSRTHLQELFGSF    ED +K+DDGDGSE+EYQIYEQD+D+DSDDD S
Subjt:  --------------------LNMDDVSRTHLQELFGSF----EDGEKMDDGDGSEDEYQIYEQDTDMDSDDDQS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G49410.1 Transcription factor IIIC, subunit 5

1.7e-09

30.77

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Query:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKRED------------RKDCTKVDQGGE-----HEANAAVINDDKLDANYAEED
        +++SGWFS  +L+ +R R+ +RF+SVFP  G E + ++  E FE+ ++               ++ TK  +  E     +E   A +N+D  D N  +ED
Subjt:  TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKRED------------RKDCTKVDQGGE-----HEANAAVINDDKLDANYAEED

Query:  EEED--------------GLGVESDLNMDDVSRTHLQELFGSFEDGEKMDDG-----DGSEDEYQIYEQDTD--MDSDDDQS
        E+E+               L     L+ ++ SRT+LQ LF SF   E    G     DGS+ E+QIYE++++     DDD +
Subjt:  EEED--------------GLGVESDLNMDDVSRTHLQELFGSFEDGEKMDDG-----DGSEDEYQIYEQDTD--MDSDDDQS

AT5G24450.1 Transcription factor IIIC, subunit 5

7.8e-10

31.95

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Query:  YESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKR-------------------EDRKDCTKVDQGGEHEANAAVINDDKLDANYAEE
        Y++GWFS  +L+ +R R+ +RF+SVFP  G E + ++  E FE+ ++                   +D K C   ++  + + NA   ++D LD  Y EE
Subjt:  YESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKR-------------------EDRKDCTKVDQGGEHEANAAVINDDKLDANYAEE

Query:  DEEEDGLGVESD--LNMDDVSRTHLQELFGSFED------GEKMDDGDGSEDEYQIYEQDTDMDSDDDQ
           +D + + S    +M++ SRT+LQ LF  F        G   DD D S+ EY IYEQ+++   DD++
Subjt:  DEEEDGLGVESD--LNMDDVSRTHLQELFGSFED------GEKMDDGDGSEDEYQIYEQDTDMDSDDDQ

Sequences

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CDS sequence

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mRNA sequence

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ATGCATACTTATGAATCTGGATGGTTTTCTCTGCGTATCCTAAATTGCATCCGACAACGAATCATGATGAGGTTTTTATCAGTATTCCCAACGGCAGGTGCTGAAGCTTT
ACTCAGAGCAGCCTCTGAAAGCTTTGAAAAATTGAAGAGGGAGGATAGAAAAGACTGCACAAAGGTCGACCAGGGAGGGGAACATGAAGCCAATGCAGCTGTGATCAATG
ATGACAAACTGGATGCTAATTACGCCGAAGAAGATGAAGAAGAAGATGGCCTAGGTGTTGAGAGTGATTTAAACATGGACGATGTTTCAAGAACACATTTGCAAGAATTG
TTTGGTAGCTTTGAAGATGGAGAGAAGATGGACGATGGAGATGGCAGTGAGGATGAGTATCAAATATATGAGCAAGATACTGATATGGACTCTGACGATGATCAATCATA
GCTTTTCTTTTCTTTTTTTCCTTTTTTCAGAATATTGTCAGTTAGTTTATGTTTACTTAATTTAATTGGAAAATTACTATAATTAAAAAAAATATCCAACTATTTGATAG
ATCTATTTTATGTTTTGAGATTTACTGAGTTGAGCAAAGATGTGTTTAGCACATAACTCAAATTTTGTTTCATCACTTGGATTCTAGTACAAATTTTGAAAACATTTTTA
TG

Protein sequence

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MHTYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKLDANYAEEDEEEDGLGVESDLNMDDVSRTHLQEL
FGSFEDGEKMDDGDGSEDEYQIYEQDTDMDSDDDQS

Lsi03G009030 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome