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Lsi03G009140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G009140
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionATP-dependent DNA helicase
Genome locationchr03:17078976..17079508
RNA-Seq ExpressionLsi03G009140
SyntenyLsi03G009140
Gene Ontology termsGO:0000723 - telomere maintenance (biological process)
GO:0006281 - DNA repair (biological process)
GO:0003678 - DNA helicase activity (molecular function)
InterPro domainsIPR010285 - DNA helicase Pif1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008454685.1 PREDICTED: ATP-dependent DNA helicase PIF1-like [Cucumis melo]8.9e-2443.83Show/hide
Query:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNICVWRRFSSSTSSTSK--RNKTT--------------NHFILSIGNEEEPAYNNDIVT
        L+RK KLIIWDEAP+A +YTIESV+R+ RDIMD   PFGGK I     F        K  R +T                 FIL +G+  +P   +DI+ 
Subjt:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNICVWRRFSSSTSSTSK--RNKTT--------------NHFILSIGNEEEPAYNNDIVT

Query:  LPQEITM-SHFETNVEIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP
        LP++I + ++ E + +   IRKIYP+L+LHA    Y+T+R ILATTN  +D LN  +I +FP
Subjt:  LPQEITM-SHFETNVEIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP

XP_019242534.1 PREDICTED: uncharacterized protein LOC109222664, partial [Nicotiana attenuata]4.7e-2541.57Show/hide
Query:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNIC-----------------------------VWRRFSSSTSSTSKRNKTT---NHFIL
        L+RKAKLIIWDEAP+A R TIE+VDRSFRDIMD   PFGGK +                              +W +      + + R +T    + F+L
Subjt:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNIC-----------------------------VWRRFSSSTSSTSKRNKTT---NHFIL

Query:  SIGNEEEPAYNNDIVTLPQEITMSHF-ETNVEIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP
         IG+ EEP   +D+V LP+EI + H   T  E  +IR+I+P+L  +A+  +YMT RAILA+ N+ +D LN +LI+ FP
Subjt:  SIGNEEEPAYNNDIVTLPQEITMSHF-ETNVEIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP

XP_025888320.1 uncharacterized protein LOC112942002 [Solanum lycopersicum]1.8e-2444Show/hide
Query:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNICVWRRFSS----STSSTSKRNKTTNHFILSIGNEEEPAYNNDIVTLPQEITMSHFET
        L+RKAKLIIWDEAP+A R TIE+VD+SFRDIMD   PFGGK +     F         ST       + F+L +GN +EP    +++ LP+++T+ H + 
Subjt:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNICVWRRFSS----STSSTSKRNKTTNHFILSIGNEEEPAYNNDIVTLPQEITMSHFET

Query:  NV-EIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP
         + E  II++I+ +LQ +A + +Y+  RAILA+ ND +D +N  LI+ FP
Subjt:  NV-EIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP

XP_027769575.1 uncharacterized protein LOC114075285 [Solanum pennellii]1.2e-2337.64Show/hide
Query:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNIC-----------------------------VW---RRFSSSTSSTSKRNKTTNHFIL
        L+RKAK+IIWDEAP+A R TIE+VDRSFRDIMD   PFGGK +                              +W    +   + +  ++ + T + F+L
Subjt:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNIC-----------------------------VW---RRFSSSTSSTSKRNKTTNHFIL

Query:  SIGNEEEPAYNNDIVTLPQEITMSHFETNV-EIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP
         +GN +EP    +++ LP+++T+ H +  + E  II++I+ NLQ +A + +Y+T RAILA+ ND +D +N  LI+ FP
Subjt:  SIGNEEEPAYNNDIVTLPQEITMSHFETNV-EIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP

XP_027770891.1 ATP-dependent DNA helicase PIF1-like [Solanum pennellii]8.9e-2437.64Show/hide
Query:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNIC-----------------------------VW---RRFSSSTSSTSKRNKTTNHFIL
        L+RKAK+IIWDEAP+A R TIE+VDRSFRDIMD   PFGGK +                              +W    +   + +  ++ + T + F+L
Subjt:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNIC-----------------------------VW---RRFSSSTSSTSKRNKTTNHFIL

Query:  SIGNEEEPAYNNDIVTLPQEITMSHFETNV-EIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP
         +GN +EP    +++ LP+++T+ H +  + E  II++I+ NLQ +A + +Y+T RAILA+ ND +D +N  LI+ FP
Subjt:  SIGNEEEPAYNNDIVTLPQEITMSHFETNV-EIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP

TrEMBL top hitse value%identityAlignment
A0A1S3BZY9 ATP-dependent DNA helicase4.3e-2443.83Show/hide
Query:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNICVWRRFSSSTSSTSK--RNKTT--------------NHFILSIGNEEEPAYNNDIVT
        L+RK KLIIWDEAP+A +YTIESV+R+ RDIMD   PFGGK I     F        K  R +T                 FIL +G+  +P   +DI+ 
Subjt:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNICVWRRFSSSTSSTSK--RNKTT--------------NHFILSIGNEEEPAYNNDIVT

Query:  LPQEITM-SHFETNVEIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP
        LP++I + ++ E + +   IRKIYP+L+LHA    Y+T+R ILATTN  +D LN  +I +FP
Subjt:  LPQEITM-SHFETNVEIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP

A0A1S4CBN9 ATP-dependent DNA helicase3.7e-2340.45Show/hide
Query:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNIC-----------------------------VWRRFSSSTSSTSKRNKTT---NHFIL
        L+RKAKLIIWDEAP+A R TIE+VDRSFRDIMD   PFGGK +                              +W +      + + R +T    + F+L
Subjt:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNIC-----------------------------VWRRFSSSTSSTSKRNKTT---NHFIL

Query:  SIGNEEEPAYNNDIVTLPQEITMSHFETNVEIE-IIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP
         IG+ EEP   +++V LP+EI + H   +   + +IR+I+P+L  +A+  +YMT RAILA+ N+ ID LN  LI  FP
Subjt:  SIGNEEEPAYNNDIVTLPQEITMSHFETNVEIE-IIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP

A0A1U7XH39 ATP-dependent DNA helicase9.0e-2238.2Show/hide
Query:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNIC-----------------------------VWRRFSS---STSSTSKRNKTTNHFIL
        L+RK+KLIIWDEAP+A R TIE+VDRSFRDIMD   PFGGK +                              +W +        +  ++ + T + F+L
Subjt:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNIC-----------------------------VWRRFSS---STSSTSKRNKTTNHFIL

Query:  SIGNEEEPAYNNDIVTLPQEITMSH-FETNVEIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP
         IGN EEP   +D+V L +++ + H  ++  E  +IR+I+P+L   ++  +YMT RAILA+ N+ +D LN +LI  FP
Subjt:  SIGNEEEPAYNNDIVTLPQEITMSH-FETNVEIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP

A0A5B7A9C3 ATP-dependent DNA helicase1.5e-2137.64Show/hide
Query:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNIC-----------------------------VWRRFSSSTSSTSKRNKTT---NHFIL
        LLRKA+LIIWDE P+A R+ IE++DR+ RDIM+    FGGK I                              +W +    T + + R +     + F+L
Subjt:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNIC-----------------------------VWRRFSSSTSSTSKRNKTT---NHFIL

Query:  SIGNEEEPAYNNDIVTLPQEITMSHFETNV-EIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP
         +GN EEP  N D++ +P ++ + +    V E ++I  IYP+L+ +A S EYMT RAILAT N+ +D LN  LI +FP
Subjt:  SIGNEEEPAYNNDIVTLPQEITMSHFETNV-EIEIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP

C6JRR4 ATP-dependent DNA helicase5.3e-2239.74Show/hide
Query:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNICVWRRFSS-----STSSTSKRNKTTNHFILSIGNEEEPAYNNDIVTLPQEITMSHFE
        LLR+A LIIWDE  +  R  +E++DRS +DIM+C LPFGGK +     F       +  + ++ +     ++L IGN  E    +D V LP +I + + +
Subjt:  LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNICVWRRFSS-----STSSTSKRNKTTNHFILSIGNEEEPAYNNDIVTLPQEITMSHFE

Query:  TNVEI-EIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP
        T+V + ++I+ ++P L+ HATS  YM+SRAIL+T N+ +D LN ++I  FP
Subjt:  TNVEI-EIIRKIYPNLQLHATSMEYMTSRAILATTNDQIDYLNGLLINIFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTACTTCGAAAGGCCAAACTAATAATATGGGATGAGGCACCTTTGGCAACAAGATATACCATTGAATCAGTTGATCGATCATTTAGAGATATAATGGATTGTACTCTACC
ATTTGGAGGAAAAAATATTTGTGTTTGGAGGAGATTTTCGTCAAGTACTTCCAGTACTTCCAAAAGGAACAAGACAACAAACCATTTTATCTTAAGCATTGGAAATGAAG
AAGAACCTGCTTATAATAATGATATTGTTACCTTGCCGCAAGAAATTACAATGTCACATTTTGAAACCAACGTGGAGATAGAAATCATAAGAAAGATATATCCAAATTTA
CAACTTCATGCTACATCGATGGAGTACATGACAAGTAGAGCAATTTTAGCAACAACAAATGATCAGATTGATTATTTGAATGGACTTTTGATAAATATCTTTCCAAGA
mRNA sequenceShow/hide mRNA sequence
CTACTTCGAAAGGCCAAACTAATAATATGGGATGAGGCACCTTTGGCAACAAGATATACCATTGAATCAGTTGATCGATCATTTAGAGATATAATGGATTGTACTCTACC
ATTTGGAGGAAAAAATATTTGTGTTTGGAGGAGATTTTCGTCAAGTACTTCCAGTACTTCCAAAAGGAACAAGACAACAAACCATTTTATCTTAAGCATTGGAAATGAAG
AAGAACCTGCTTATAATAATGATATTGTTACCTTGCCGCAAGAAATTACAATGTCACATTTTGAAACCAACGTGGAGATAGAAATCATAAGAAAGATATATCCAAATTTA
CAACTTCATGCTACATCGATGGAGTACATGACAAGTAGAGCAATTTTAGCAACAACAAATGATCAGATTGATTATTTGAATGGACTTTTGATAAATATCTTTCCAAGA
Protein sequenceShow/hide protein sequence
LLRKAKLIIWDEAPLATRYTIESVDRSFRDIMDCTLPFGGKNICVWRRFSSSTSSTSKRNKTTNHFILSIGNEEEPAYNNDIVTLPQEITMSHFETNVEIEIIRKIYPNL
QLHATSMEYMTSRAILATTNDQIDYLNGLLINIFPR