; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G009380 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G009380
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionERAD-associated E3 ubiquitin-protein ligase HRD1B-like
Genome locationchr03:17968727..17969911
RNA-Seq ExpressionLsi03G009380
SyntenyLsi03G009380
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063647.1 ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Cucumis melo var. makuwa]4.0e-0775.86Show/hide
Query:  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETE
        I+ LQNQLQLLRKPKVEESSR A ETDKKGKS+A  SP+PS+  S SSS+SH PGETE
Subjt:  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETE

XP_004139202.1 ERAD-associated E3 ubiquitin-protein ligase HRD1B isoform X2 [Cucumis sativus]3.1e-0772.58Show/hide
Query:  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESPVR
        I+ LQNQLQLLRKPKVEESSR A E DKKGKS+A    SPSS  S SSS+SH PGETE  VR
Subjt:  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESPVR

XP_008455400.1 PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Cucumis melo]6.2e-0875.81Show/hide
Query:  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESPVR
        I+ LQNQLQLLRKPKVEESSR A ETDKKGKS+A  SPSPS+  S SSS+SH PGETE  VR
Subjt:  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESPVR

XP_031737096.1 ERAD-associated E3 ubiquitin-protein ligase HRD1B isoform X1 [Cucumis sativus]3.1e-0772.58Show/hide
Query:  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESPVR
        I+ LQNQLQLLRKPKVEESSR A E DKKGKS+A    SPSS  S SSS+SH PGETE  VR
Subjt:  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESPVR

XP_038889876.1 ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Benincasa hispida]2.1e-0875.44Show/hide
Query:  IKILQNQLQLLRKPKVEESSRAGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETE
        I+ILQNQLQLLR+PKVEESSRAGE DKKGKS+A+   S S LPSSSS +SH  GETE
Subjt:  IKILQNQLQLLRKPKVEESSRAGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETE

TrEMBL top hitse value%identityAlignment
A0A0A0LJG4 RING-type domain-containing protein1.5e-0772.58Show/hide
Query:  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESPVR
        I+ LQNQLQLLRKPKVEESSR A E DKKGKS+A    SPSS  S SSS+SH PGETE  VR
Subjt:  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESPVR

A0A1S4E231 ERAD-associated E3 ubiquitin-protein ligase HRD1B-like3.0e-0875.81Show/hide
Query:  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESPVR
        I+ LQNQLQLLRKPKVEESSR A ETDKKGKS+A  SPSPS+  S SSS+SH PGETE  VR
Subjt:  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESPVR

A0A5A7V9K3 ERAD-associated E3 ubiquitin-protein ligase HRD1B-like1.9e-0775.86Show/hide
Query:  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETE
        I+ LQNQLQLLRKPKVEESSR A ETDKKGKS+A  SP+PS+  S SSS+SH PGETE
Subjt:  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETE

A0A6J1CJF5 ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X12.1e-0669.35Show/hide
Query:  IKILQNQLQLLRKPKVEESSRAGETDKKGKSVASFSPSPSSLPSSSSSESHRP-GETESPVR
        I++LQ QLQLLR PKVEES+RAGE DKKGKSVAS  PS     SSS SESH P GE E  VR
Subjt:  IKILQNQLQLLRKPKVEESSRAGETDKKGKSVASFSPSPSSLPSSSSSESHRP-GETESPVR

A0A6J1KWZ5 ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X21.6e-0670Show/hide
Query:  IKILQNQLQLLRKPKVEESSRAGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESPV
        I+ILQ+QLQLLRK KVEESS AGE DKKGKS+AS S S     SSS S+SH PGETE  V
Subjt:  IKILQNQLQLLRKPKVEESSRAGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESPV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTATAATAAGAAGTTATGCAGGATCTCCTTGAAAACTACCTTGATCAAAATCCTCCAGAATCAGCTGCAACTTCTCCGTAAACCAAAAGTTGAGGAAAGCTCAAG
AGCAGGTGAGACAGATAAGAAAGGGAAAAGCGTAGCATCCTTCTCACCGTCACCATCATCGTTGCCATCATCATCTTCATCAGAATCTCATCGACCTGGAGAAACCGAAA
GTCCGGTGAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAATTATAATAAGAAGTTATGCAGGATCTCCTTGAAAACTACCTTGATCAAAATCCTCCAGAATCAGCTGCAACTTCTCCGTAAACCAAAAGTTGAGGAAAGCTCAAG
AGCAGGTGAGACAGATAAGAAAGGGAAAAGCGTAGCATCCTTCTCACCGTCACCATCATCGTTGCCATCATCATCTTCATCAGAATCTCATCGACCTGGAGAAACCGAAA
GTCCGGTGAGATAGAATAAATGTGCATAAATTATATTGTGTAATAATACAAGACTGCAGATTCACAATGACACGGATGTCTGTCTATTGTATACGGAAGATGCAGTTGGT
AAATCTTTAGAAGCAGTCTTCTTCCCCTTTGCCGTGTTGGTTGGTTGATTTGATTGGTTGTAAATGCTGAATTTGGTGTCTCTTTTGAAGCAGTCTATGCGACGGTCAAA
AAAGAATATGGAAAGTTATTTTTTTCCTTTTTTTTTTTTTTGGGTTGCTAGAAAAAGCAAAAGAAAGAAAGTTTATTCAAAGATGTTTGGTTTCTATTTTCTTAGTCTAA
AAGATGCTTTTTGAAAAGCAATTCAATTCAATTCACATGCGCATGAAATGAAAGCATTGATTGTTTGGAAGTGGACATTTTAGAAAGGTT
Protein sequenceShow/hide protein sequence
MNYNKKLCRISLKTTLIKILQNQLQLLRKPKVEESSRAGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESPVR