CuGenDBv2

Gene ID	Lsi03G009580
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem I assembly protein Ycf3
Genome location	chr03:18340525..18340921
RNA-Seq Expression	Lsi03G009580
Synteny	Lsi03G009580
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022900 - electron transport chain (biological process) GO:0048564 - photosystem I assembly (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0005515 - protein binding (molecular function) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0019843 - rRNA binding (molecular function) GO:0048038 - quinone binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR001440 - Tetratricopeptide repeat 1 IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat

Homology

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GenBank top hits

e value

%identity

Alignment

AHM88684.1 hypothetical chloroplast RF34 [Lagenaria siceraria]

9.5e-32

95.71

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
        + NYYEA+RLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL

WP_202958889.1 tetratricopeptide repeat protein [Solirubrobacter sp. CPCC 204708]

7.3e-32

95.71

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
        ++NYYEA+RLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL

YP_009341778.1 hypothetical chloroplast RF34 [Castanopsis concinna]

7.3e-32

95.71

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
        ++NYYEA+RLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL

YP_009777019.1 hypothetical chloroplast RF34 [Quercus coccinea]

2.1e-31

95.65

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSP
        ++NYYEA+RLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSP
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSP

YP_010149075.1 hypothetical chloroplast RF34 [Castanopsis carlesii]

7.3e-32

95.71

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
        ++NYYEA+RLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL

TrEMBL top hits

e value

%identity

Alignment

A0A1N7TDX0 Photosystem I assembly protein Ycf3

3.5e-32

95.71

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
        ++NYYEA+RLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL

A0A6H1YHQ0 Photosystem I assembly protein Ycf3

1.0e-31

95.65

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSP
        ++NYYEA+RLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSP
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSP

A0A7J6HSE8 TPR_REGION domain-containing protein

3.5e-32

95.71

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
        ++NYYEA+RLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL

A0A7U0IVV2 Hypothetical chloroplast RF34

3.5e-32

95.71

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
        ++NYYEA+RLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL

X2F3U2 Hypothetical chloroplast RF34

4.6e-32

95.71

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
        + NYYEA+RLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL

SwissProt top hits

e value

%identity

Alignment

P61843 Photosystem I assembly protein Ycf3

1.1e-30

93.75

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
        ++NYYEA+RLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY

Q09X16 Photosystem I assembly protein Ycf3

2.2e-31

95.31

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
        ++NYYEA+RLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY

Q4VZH4 Photosystem I assembly protein Ycf3

2.2e-31

95.31

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
        ++NYYEA+RLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY

Q53CF3 Photosystem I assembly protein Ycf3

1.1e-30

93.75

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
        ++NYYEA+RLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY

Q8S8X3 Photosystem I assembly protein Ycf3

1.1e-30

93.75

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
        ++NYYEA+RLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY

Arabidopsis top hits

e value

%identity

Alignment

ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein

7.7e-32

93.75

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Query:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
        ++NYYEA+RLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Subjt:  MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY

Sequences

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CDS sequence

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ATGAGAAATTATTATGAAGCTATACGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGTCTTATCCACACAAGGAATGGAGAACATACAAAAGC
TTTGGAATATTATTTTCGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGTGCGACTATCTCCACTATAG

mRNA sequence

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Protein sequence

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MRNYYEAIRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL

Lsi03G009580 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome