CuGenDBv2

Gene ID	Lsi03G009610
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L23
Genome location	chr03:18544081..18571177
RNA-Seq Expression	Lsi03G009610
Synteny	Lsi03G009610
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0007015 - actin filament organization (biological process) GO:0032259 - methylation (biological process) GO:0015629 - actin cytoskeleton (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008168 - methyltransferase activity (molecular function) GO:0070180 - large ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000218 - Ribosomal protein L14P IPR036853 - Ribosomal protein L14 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

GAV84144.1 Ribosomal_L14 domain-containing protein [Cephalotus follicularis]

3.7e-08

77.27

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Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL
        S GNKFR+SLGLP+AATVN  DNTGAKNLYIISVKG K    RL
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL

GFZ17660.1 ribosomal protein L14p/L23e family protein [Actinidia rufa]

5.7e-09

64.41

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Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRLSGEHQYRFRHAQPQE
        S GNKFR+SLGLP+AATVN  DNTGAKNLYIISVKG K    RL      R+ H   QE
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRLSGEHQYRFRHAQPQE

KAB2075314.1 hypothetical protein ES319_A07G214400v1 [Gossypium barbadense]

7.5e-09

79.55

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Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL
        S GNKFR+SLGLP+AATVNY DNTGAKNLYIISVKG K    RL
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL

KAF3780745.1 60S ribosomal protein L23 [Nymphaea thermarum]

3.7e-08

79.55

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Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL
        S GNKFRISLGLP+AATVN  DNTGAKNLYIISVKG K    RL
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL

OIV97968.1 hypothetical protein TanjilG_14068 [Lupinus angustifolius]

3.7e-08

88.89

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Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKG
        S GNKFR+SLGLP+AATVNY DNTGAKNLYIISVKG
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKG

TrEMBL top hits

e value

%identity

Alignment

A0A1J7H6J2 Uncharacterized protein

1.8e-08

88.89

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Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKG
        S GNKFR+SLGLP+AATVNY DNTGAKNLYIISVKG
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKG

A0A2P5YSL5 Uncharacterized protein

3.6e-09

79.55

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Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL
        S GNKFR+SLGLP+AATVNY DNTGAKNLYIISVKG K    RL
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL

A0A5D2G142 Uncharacterized protein

3.6e-09

79.55

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Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL
        S GNKFR+SLGLP+AATVNY DNTGAKNLYIISVKG K    RL
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL

A0A5D2PZ50 Uncharacterized protein

3.6e-09

79.55

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Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL
        S GNKFR+SLGLP+AATVNY DNTGAKNLYIISVKG K    RL
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL

A0A7J0H3I6 Ribosomal protein L14p/L23e family protein

2.8e-09

64.41

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Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRLSGEHQYRFRHAQPQE
        S GNKFR+SLGLP+AATVN  DNTGAKNLYIISVKG K    RL      R+ H   QE
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRLSGEHQYRFRHAQPQE

SwissProt top hits

e value

%identity

Alignment

P49690 60S ribosomal protein L23

2.4e-10

78.57

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Query:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL
        GNKFR+SLGLP+AATVN  DNTGAKNLYIISVKG K    RL
Subjt:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL

Q07760 60S ribosomal protein L23

1.4e-10

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Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL
        S GNKFR+SLGLP+AAT+N  DNTGAKNLYIISVKG K    RL
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL

Q3T057 60S ribosomal protein L23

7.8e-09

70.45

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Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL
        S G KFRISLGLP+ A +N  DNTGAKNLYIISVKG K    RL
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL

Q6PC14 60S ribosomal protein L23

7.8e-09

70.45

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Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL
        S G KFRISLGLP+ A +N  DNTGAKNLYIISVKG K    RL
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL

Q9XSU3 60S ribosomal protein L23

7.8e-09

70.45

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Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL
        S G KFRISLGLP+ A +N  DNTGAKNLYIISVKG K    RL
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL

Arabidopsis top hits

e value

%identity

Alignment

AT1G04480.1 Ribosomal protein L14p/L23e family protein

1.7e-11

78.57

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Query:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL
        GNKFR+SLGLP+AATVN  DNTGAKNLYIISVKG K    RL
Subjt:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL

AT2G33370.1 Ribosomal protein L14p/L23e family protein

1.7e-11

78.57

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Query:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL
        GNKFR+SLGLP+AATVN  DNTGAKNLYIISVKG K    RL
Subjt:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL

AT3G04400.1 Ribosomal protein L14p/L23e family protein

1.7e-11

78.57

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Query:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL
        GNKFR+SLGLP+AATVN  DNTGAKNLYIISVKG K    RL
Subjt:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL

AT3G04400.2 Ribosomal protein L14p/L23e family protein

3.0e-08

75.68

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Query:  ISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL
        +SLGLP+AATVN  DNTGAKNLYIISVKG K    RL
Subjt:  ISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRL

Sequences

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CDS sequence

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ATGCGTGCGGTTGTTATGAAGGCTTATGAGGCATCCATAGGGAACAAGTTTCGGATATCACTGGGTCTTCCAATGGCTGCTACTGTCAACTATGTAGACAACACGGGAGC
TAAGAATCTCTACATCATTTCAGTGAAAGGGTTCAAAGTAGGGAATCAGAGGCTGTCAGGGGAGCATCAGTATAGGTTTCGGCATGCACAACCACAGGAGATTGTTTATG
TGGGTACTGAATCCTATTAA

mRNA sequence

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Protein sequence

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MRAVVMKAYEASIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKVGNQRLSGEHQYRFRHAQPQEIVYVGTESY

Lsi03G009610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome