; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G009670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G009670
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA replication complex GINS protein PSF2
Genome locationchr03:18775942..18785317
RNA-Seq ExpressionLsi03G009670
SyntenyLsi03G009670
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0031981 - nuclear lumen (cellular component)
InterPro domainsIPR007257 - DNA replication complex GINS protein Psf2
IPR021151 - GINS subunit, domain A
IPR036224 - GINS, helical bundle-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK07564.1 DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo var. makuwa]7.8e-8096.79Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP
        MAGQSDP +NLFSAEEVEFVAEDEM+EIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAER+SQGSFQILP
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP

Query:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR
        FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI+
Subjt:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR

XP_004137154.1 DNA replication complex GINS protein PSF2 [Cucumis sativus]5.4e-8197.44Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP
        MAGQSDPH+NLFSAEEVEFVAEDEMVEI+PNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAER+SQGSFQILP
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP

Query:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR
        FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI+
Subjt:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR

XP_008462891.1 PREDICTED: DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo]7.8e-8096.79Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP
        MAGQSDP +NLFSAEEVEFVAEDEM+EIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAER+SQGSFQILP
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP

Query:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR
        FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI+
Subjt:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR

XP_023517317.1 DNA replication complex GINS protein PSF2 isoform X1 [Cucurbita pepo subsp. pepo]1.5e-7895.51Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP
        MAGQSDPH+ LFSAEE+EFVAEDEMVEIVPNMRMDSL+LICGDYGPFYPQIATEVPLWLAIALKKRGKCAIR PEWMSVEKLTQ LEAERESQGSFQILP
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP

Query:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR
        FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI+
Subjt:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR

XP_038905117.1 DNA replication complex GINS protein PSF2 isoform X1 [Benincasa hispida]9.2e-8198.08Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP
        MAGQSDPH+NLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIR PEWMSVEKLTQILEAERESQGSFQILP
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP

Query:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR
        FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI+
Subjt:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR

TrEMBL top hitse value%identityAlignment
A0A1S4E3Y0 DNA replication complex GINS protein PSF23.8e-8096.79Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP
        MAGQSDP +NLFSAEEVEFVAEDEM+EIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAER+SQGSFQILP
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP

Query:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR
        FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI+
Subjt:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR

A0A5D3C8I7 DNA replication complex GINS protein PSF2 isoform X13.8e-8096.79Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP
        MAGQSDP +NLFSAEEVEFVAEDEM+EIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAER+SQGSFQILP
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP

Query:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR
        FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI+
Subjt:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR

A0A6J1D7Q0 DNA replication complex GINS protein PSF21.6e-7894.87Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP
        MAGQSDPH+ LFSAEEVEFVAEDE+VEIVPNMRMD LHLICGDYGPFYPQIA EVPLWLAIALKKRGKCAIR+PEWMSVEKLTQILEAERESQG+FQILP
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP

Query:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR
        FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI+
Subjt:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR

A0A6J1EAX5 DNA replication complex GINS protein PSF22.1e-7894.87Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP
        MAGQSDPH+ LFSAEE+EFVAEDEMVEIVPNMRMDSL+LICGDYGPFYPQIATEVPLWLAIALKKRGKCAIR PEWMSVEKLTQ LEAERESQGSFQILP
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP

Query:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR
        FHYVEISKLLFDHAR+DVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI+
Subjt:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR

A0A6J1HPD8 DNA replication complex GINS protein PSF21.6e-7894.87Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP
        MAGQSDPH+ LFSAEE+EFVAEDEMVEIVPNMRMDSL+LICGDYGPFYPQIATEVPLWLAIALKKRGKCAIR PEWMSVEKLTQ LEAERESQGSFQILP
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP

Query:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR
        FHYVE+SKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI+
Subjt:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIR

SwissProt top hitse value%identityAlignment
P0CQ31 DNA replication complex GINS protein PSF21.2e-2746.62Show/hide
Query:  EEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILPFHYVEISKLLFDHA
        +E+ F+AE + + IVP   M  + LI G YGPF P  A+ VPLWL ++LKK+ KC I  PEW+S E+L   L  E+E+   F+ LP  ++EISK+L D A
Subjt:  EEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILPFHYVEISKLLFDHA

Query:  RDDVPDMYLVRSLIEDIRDVRFHKVETSLESID
         DD+    L+RSL++DIR+VR  K+   L+S D
Subjt:  RDDVPDMYLVRSLIEDIRDVRFHKVETSLESID

Q7ZT46 DNA replication complex GINS protein PSF21.9e-2846.97Show/hide
Query:  AEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILPFHYVEISKLLFDH
        A EVEF+AE E V ++PN  +D ++LI GD GPF P +  EVPLWLAI LK+R KC I  PEWM VEKL  I + ER  +    +   +Y+E++KLL +H
Subjt:  AEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILPFHYVEISKLLFDH

Query:  ARDDVPDMYLVRSLIEDIRDVRFHKVETSLES
        A D++P    +R+L++D  D R  K+  S +S
Subjt:  ARDDVPDMYLVRSLIEDIRDVRFHKVETSLES

Q9C7A8 DNA replication complex GINS protein PSF21.4e-6072.26Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP
        MAGQ+DPH++LFS +EVEF+AEDE+VEIVPNM M+ L+ I GD+G F PQI T+VPLWLA+ALK+RGKC  R P WMSV+ LTQILEAERESQ +FQ LP
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP

Query:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI
        F YVEI++LLFDHARDD+PDMY+VRSL+EDIRDVR HK+ET+L S    TSAVKI
Subjt:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI

Q9D600 DNA replication complex GINS protein PSF21.5e-3048.48Show/hide
Query:  AEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILPFHYVEISKLLFDH
        A EVEF+AE E+V I+PN  +D ++LI GD GPF P +  +VPLWLAI LK+R KC +  PEWM VEKL Q+ + ER+ +    +   HY+EI+KLL +H
Subjt:  AEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILPFHYVEISKLLFDH

Query:  ARDDVPDMYLVRSLIEDIRDVRFHKVETSLES
        A D++P    +R+LI+D+ D R  K+  S +S
Subjt:  ARDDVPDMYLVRSLIEDIRDVRFHKVETSLES

Q9Y248 DNA replication complex GINS protein PSF21.1e-2846.21Show/hide
Query:  AEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILPFHYVEISKLLFDH
        A EVEF+AE E+V I+PN  +D ++LI GD GPF P +  EVPLWLAI LK+R KC +  PEWM VEKL ++ + ER+ +    +   +Y+E++KLL +H
Subjt:  AEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILPFHYVEISKLLFDH

Query:  ARDDVPDMYLVRSLIEDIRDVRFHKVETSLES
        A D++P    +R+L++D+ D R  K+  S +S
Subjt:  ARDDVPDMYLVRSLIEDIRDVRFHKVETSLES

Arabidopsis top hitse value%identityAlignment
AT3G12530.1 PSF21.0e-6172.26Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP
        MAGQ+DPH++LFS +EVEF+AEDE+VEIVPNM M+ L+ I GD+G F PQI T+VPLWLA+ALK+RGKC  R P WMSV+ LTQILEAERESQ +FQ LP
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILP

Query:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI
        F YVEI++LLFDHARDD+PDMY+VRSL+EDIRDVR HK+ET+L S    TSAVKI
Subjt:  FHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI

AT3G12530.2 PSF21.9e-5272.06Show/hide
Query:  VAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVP
        +AEDE+VEIVPNM M+ L+ I GD+G F PQI T+VPLWLA+ALK+RGKC  R P WMSV+ LTQILEAERESQ +FQ LPF YVEI++LLFDHARDD+P
Subjt:  VAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVP

Query:  DMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI
        DMY+VRSL+EDIRDVR HK+ET+L S    TSAVKI
Subjt:  DMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGTCAATCAGATCCTCACGTGAACCTATTTTCTGCAGAAGAGGTCGAGTTTGTAGCTGAAGATGAAATGGTGGAGATTGTTCCTAATATGAGAATGGATTCTCT
GCATTTGATCTGTGGGGATTATGGTCCATTCTATCCCCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTGCTTTGAAAAAAAGAGGGAAATGTGCAATTAGGACTC
CAGAGTGGATGTCAGTAGAAAAGTTGACACAAATTTTGGAGGCAGAACGAGAGTCTCAAGGATCTTTCCAGATACTACCCTTCCATTACGTGGAAATATCAAAACTTCTT
TTTGACCACGCACGAGATGACGTTCCTGACATGTATTTGGTGAGGTCTCTTATTGAAGATATCAGGGATGTTAGGTTTCACAAAGTTGAAACCAGCTTGGAGTCAATTGA
TACACGCACATCTGCAGTGAAGATTCGTGGAGAAAATCAGAAATACAATATTCAAATTTGTTCGGAA
mRNA sequenceShow/hide mRNA sequence
TTAAAAAGTAAAGTAAAAAGATCAAAACCCTAATAAATTTGTTCTCTCCTCTCCACCACACCACCCACGATTTCCTATTCTCCTCATCCTCAGTTGCAGACTTCCAGTCT
TCACTCCCAAATCTCCACGCCTCCACCGCCACCGCCACCGCCACCGCCACGACTCCAAGTCACCGGCGGCTCCACACCACACTTCGACACCGGCAGCACCACAGAACTAG
GCCCAGCTCCACGGTAGCAAAGGGTAAAAAATTTGTTTATCCTAAAATTTCTTCAACTATATCTAAATACATTTCTTGAATGGAGCTAGGGACAGCAAGCTTTAAAAAAA
AGGAGAAAAGAAAAAGAAAAAAAAGCGGTTTTAATCGAATCAGGGTGGTTCGGTTCAAATACCAAAACCGAAAAGGTTCGATTTTGGTCAAGGAACCGAACTGTGAACAC
CCCTGAGTCTCGCATTTGTCGTCCCACTCAGCCACCGCTGCCATCGACTCCTAGTACTACGGTTGAAGCTTTTGTTGGAAATGGCTGGTCAATCAGATCCTCACGTGAAC
CTATTTTCTGCAGAAGAGGTCGAGTTTGTAGCTGAAGATGAAATGGTGGAGATTGTTCCTAATATGAGAATGGATTCTCTGCATTTGATCTGTGGGGATTATGGTCCATT
CTATCCCCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTGCTTTGAAAAAAAGAGGGAAATGTGCAATTAGGACTCCAGAGTGGATGTCAGTAGAAAAGTTGACAC
AAATTTTGGAGGCAGAACGAGAGTCTCAAGGATCTTTCCAGATACTACCCTTCCATTACGTGGAAATATCAAAACTTCTTTTTGACCACGCACGAGATGACGTTCCTGAC
ATGTATTTGGTGAGGTCTCTTATTGAAGATATCAGGGATGTTAGGTTTCACAAAGTTGAAACCAGCTTGGAGTCAATTGATACACGCACATCTGCAGTGAAGATTCGTGG
AGAAAATCAGAAATACAATATTCAAATTTGTTCGGAA
Protein sequenceShow/hide protein sequence
MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERESQGSFQILPFHYVEISKLL
FDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIRGENQKYNIQICSE