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Lsi03G009740 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G009740
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMADS-box protein SVP-like isoform X2
Genome locationchr03:18843430..18855299
RNA-Seq ExpressionLsi03G009740
SyntenyLsi03G009740
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044284.1 MADS-box protein SVP-like isoform X2 [Cucumis melo var. makuwa]3.5e-2176.6Show/hide
Query:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD-QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLGRQQLSPIRLKP
        DEKFLKEIG VKEKE LLM+ENQRLRNK METL +RD Q E+EAVVVIGGNS+GSKS SNTSNSSSS NPNSQDYDD+SLKLG      I   P
Subjt:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD-QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLGRQQLSPIRLKP

XP_008454463.1 PREDICTED: MADS-box protein JOINTLESS-like isoform X1 [Cucumis melo]4.5e-2184.34Show/hide
Query:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD-QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLG
        DEKFLKEIG VKEKE LLM+ENQRLRNK METL +RD Q E+EAVVVIGGNS+GSKS SNTSNSSSS NPNSQDYDD+SLKLG
Subjt:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD-QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLG

XP_008454464.1 PREDICTED: MADS-box protein SVP-like isoform X2 [Cucumis melo]4.5e-2184.34Show/hide
Query:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD-QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLG
        DEKFLKEIG VKEKE LLM+ENQRLRNK METL +RD Q E+EAVVVIGGNS+GSKS SNTSNSSSS NPNSQDYDD+SLKLG
Subjt:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD-QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLG

XP_011653451.1 MADS-box protein JOINTLESS [Cucumis sativus]1.1e-1982.14Show/hide
Query:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD--QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLG
        DEKFLKEI  VKEKE+LLM+ENQRLRNK METL NRD  Q E+EAVV+I GNS+GSKS SNTSNSSSS NPNSQDYDDISLKLG
Subjt:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD--QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLG

XP_038905492.1 MADS-box protein SVP-like isoform X1 [Benincasa hispida]1.4e-2589.87Show/hide
Query:  DEKFLKEIGAVKEKEALLMEENQRLRNKMETLNRDQLEQEAVVVIGGNSLGSKSSNTSNSSSSPNPNSQDYDDISLKLG
        DEKFLKEIGAVKEKEALLMEENQRLRNK+ETLN DQ EQ+AV V+GGNSLGSK SNTSNSSSS NPNSQDYDDISLKLG
Subjt:  DEKFLKEIGAVKEKEALLMEENQRLRNKMETLNRDQLEQEAVVVIGGNSLGSKSSNTSNSSSSPNPNSQDYDDISLKLG

TrEMBL top hitse value%identityAlignment
A0A0A0KW94 K-box domain-containing protein5.4e-2082.14Show/hide
Query:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD--QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLG
        DEKFLKEI  VKEKE+LLM+ENQRLRNK METL NRD  Q E+EAVV+I GNS+GSKS SNTSNSSSS NPNSQDYDDISLKLG
Subjt:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD--QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLG

A0A1S3BYN8 MADS-box protein SVP-like isoform X22.2e-2184.34Show/hide
Query:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD-QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLG
        DEKFLKEIG VKEKE LLM+ENQRLRNK METL +RD Q E+EAVVVIGGNS+GSKS SNTSNSSSS NPNSQDYDD+SLKLG
Subjt:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD-QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLG

A0A1S3BYS5 MADS-box protein JOINTLESS-like isoform X12.2e-2184.34Show/hide
Query:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD-QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLG
        DEKFLKEIG VKEKE LLM+ENQRLRNK METL +RD Q E+EAVVVIGGNS+GSKS SNTSNSSSS NPNSQDYDD+SLKLG
Subjt:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD-QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLG

A0A5A7TMA6 MADS-box protein SVP-like isoform X21.7e-2176.6Show/hide
Query:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD-QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLGRQQLSPIRLKP
        DEKFLKEIG VKEKE LLM+ENQRLRNK METL +RD Q E+EAVVVIGGNS+GSKS SNTSNSSSS NPNSQDYDD+SLKLG      I   P
Subjt:  DEKFLKEIGAVKEKEALLMEENQRLRNK-METL-NRD-QLEQEAVVVIGGNSLGSKS-SNTSNSSSSPNPNSQDYDDISLKLGRQQLSPIRLKP

A0A6J1J9Z1 MADS-box protein SVP-like isoform X12.1e-1981.01Show/hide
Query:  DEKFLKEIGAVKEKEALLMEENQRLRNKMETLNRDQLEQEAVVVIGGNSLGSKSSNTSNSSSSPNPNSQDYDDISLKLG
        DEKFLKEI AVKEKEALLM+ENQRLRN++  LNRDQ EQ+AV V GG+SLGSKS  TSNSSSSPNP+SQD DDISLKLG
Subjt:  DEKFLKEIGAVKEKEALLMEENQRLRNKMETLNRDQLEQEAVVVIGGNSLGSKSSNTSNSSSSPNPNSQDYDDISLKLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGATGAAAAGTTTCTTAAAGAGATTGGTGCTGTAAAAGAGAAGGAAGCTTTGCTAATGGAAGAGAATCAGAGACTGAGGAATAAAATGGAAACTTTGAATAGAGA
TCAGCTAGAACAAGAAGCAGTGGTTGTTATTGGTGGAAATTCTTTGGGGTCAAAGTCGTCAAACACCAGCAACAGCAGCTCCTCACCAAACCCTAATTCTCAAGATTATG
ATGACATTTCTCTTAAATTGGGTCGGCAGCAGTTGAGCCCAATAAGGCTCAAACCAGCTAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGATGAAAAGTTTCTTAAAGAGATTGGTGCTGTAAAAGAGAAGGAAGCTTTGCTAATGGAAGAGAATCAGAGACTGAGGAATAAAATGGAAACTTTGAATAGAGA
TCAGCTAGAACAAGAAGCAGTGGTTGTTATTGGTGGAAATTCTTTGGGGTCAAAGTCGTCAAACACCAGCAACAGCAGCTCCTCACCAAACCCTAATTCTCAAGATTATG
ATGACATTTCTCTTAAATTGGGTCGGCAGCAGTTGAGCCCAATAAGGCTCAAACCAGCTAATTGA
Protein sequenceShow/hide protein sequence
MTDEKFLKEIGAVKEKEALLMEENQRLRNKMETLNRDQLEQEAVVVIGGNSLGSKSSNTSNSSSSPNPNSQDYDDISLKLGRQQLSPIRLKPAN