CuGenDBv2

Gene ID	Lsi03G010050
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Tubulin alpha chain
Genome location	chr03:19337640..19344867
RNA-Seq Expression	Lsi03G010050
Synteny	Lsi03G010050
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576903.1 hypothetical protein SDJN03_24477, partial [Cucurbita argyrosperma subsp. sororia]

4.0e-108

91.89

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MA LQILKSTVSPPSISQP FG+QSSRFFSELDSTRRF LLHGRRRS+RYGCV RRLSFRC+AQD+DKESNGEEPPESLFMKELKKRGITPTSLLED +N
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        +DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHD +KTPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDERISQ+APRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

XP_022922737.1 uncharacterized protein LOC111430640 [Cucurbita moschata]

8.9e-108

91.44

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MA LQILKSTVSPPSISQP FG+QSSRFFSELDSTRRF LLHGRRRS+RYGCV RRLSFRC+AQD+DKESNGEEPPESLFMKELKKRGITPTSLLED +N
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        +DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHD +KTPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDER+SQ+APRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

XP_022984914.1 uncharacterized protein LOC111483048 [Cucurbita maxima]

1.4e-108

92.34

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MA LQILKSTVSPPSISQP FG+QSSRFFSELDSTRRFVLLHGRRRS+RYGCV RRLSFRC+AQD+DKESNGEEPPESLFMKELKKRGITPTSLLED +N
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        +DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHD +KTPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDERISQ+APRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

XP_023552655.1 uncharacterized protein LOC111810239 [Cucurbita pepo subsp. pepo]

6.8e-108

91.89

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MA LQILKSTVSPPSISQP FG+QSSRFF ELDSTRRFVLLHGRRRS+RYGCV RRLSFRC+AQD+DKESNGEEPPESLFMKELKKRGITPTSLLED +N
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        +DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHD +KTPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDERISQ+APRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

XP_038905067.1 uncharacterized protein LOC120091218 isoform X1 [Benincasa hispida]

4.7e-109

93.24

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MAALQILKSTVSPPSISQPNFG QSSRFFS+LDSTRRFVLLHGRRRS+RYGCVCRRLSFRC+AQDADK+SNGEEPPESLFMKELKKRGITPTSLLED NN
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI+ITVSFFFALYFFFG SFVHD S+T ISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
         YVDPYALLE+ERISQ AP VN
Subjt:  PYVDPYALLEDERISQIAPRVN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BY38 uncharacterized protein LOC103494832

1.1e-100

87.84

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MA+LQILKST+S PSIS PNFG+QS+RFFS+ DS    +LLHGRRRS+R  CVCRR SFRC+A+DADKESNGEEPPESLFMKELKKRGITPTSLLED NN
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI+ITVSFFF LYFFFG SF+HD  KTPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDERISQIAP VN
Subjt:  PYVDPYALLEDERISQIAPRVN

A0A6J1D5D9 uncharacterized protein LOC111017763

2.9e-104

89.64

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MAALQ+LKS VSP SISQPNFG +SSRF S+ DSTRRFV  HGRRRS+RYGCVCRRLSFRC+AQDADKESNGEEPPESLFMKELKKRG+TPTSLLED+N+
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        +DFGLGGEMTGE RDFS RSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVH+  +TPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDERISQ APRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

A0A6J1E457 uncharacterized protein LOC111430640

4.3e-108

91.44

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MA LQILKSTVSPPSISQP FG+QSSRFFSELDSTRRF LLHGRRRS+RYGCV RRLSFRC+AQD+DKESNGEEPPESLFMKELKKRGITPTSLLED +N
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        +DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHD +KTPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDER+SQ+APRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

A0A6J1JBV1 uncharacterized protein LOC111483048

6.6e-109

92.34

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MA LQILKSTVSPPSISQP FG+QSSRFFSELDSTRRFVLLHGRRRS+RYGCV RRLSFRC+AQD+DKESNGEEPPESLFMKELKKRGITPTSLLED +N
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        +DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHD +KTPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDERISQ+APRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

A0A6J1JUF8 uncharacterized protein LOC111488465 isoform X1

4.2e-95

83.78

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MAALQILKSTVS  S SQ +FG QSSRFF+ELDS+RR V  HGRRRS+RYGCVCRRLSFRC+AQD+ KESNGEEPPESLFMKELKKRGITPTSLLED  +
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        ++F LGGE TGEN DFS  SAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIVITV+FFFA YFFFG SFVHD ++TP SPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYV PYA LEDERISQIAPRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50020.1 unknown protein

1.4e-50

65.61

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Query:  DKESNGEEPPESLFMKELKKRGITPTSLLEDAN-NSDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLG
        D +S GEEPPESLFMKELK+RG+TPTSLL+D   + D    G+ TG +   S+ +A +   +KSL NQRERS+ LNSEGLEGLIPRA++LLTIGGTFFLG
Subjt:  DKESNGEEPPESLFMKELKKRGITPTSLLEDAN-NSDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLG

Query:  FWPLIVITVSFFFALYFFFGPSFVHDASKTPISPPPYVDPYALLEDERISQIAPRVN
        FWPLIV+T+  F ALY +FG  F+HD S+TP+SPPPY+DPYALLEDERIS + PR+N
Subjt:  FWPLIVITVSFFFALYFFFGPSFVHDASKTPISPPPYVDPYALLEDERISQIAPRVN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTGCTCTGCAAATTCTCAAATCAACTGTCTCTCCTCCTTCGATCTCTCAGCCGAATTTTGGCGCACAATCAAGCCGGTTCTTCTCGGAGTTGGATTCCACC
AGGAGGTTTGTACTGCTTCATGGACGTCGGAGGAGTATGCGATATGGCTGCGTTTGTAGAAGGTTGAGTTTCCGTTGCTCTGCTCAGGATGCTGATAAGGAAAGC
AATGGAGAAGAACCTCCAGAATCATTATTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCCACTTCCTTGCTTGAGGATGCTAACAACAGTGACTTTGGACTT
GGTGGCGAGATGACTGGAGAAAACAGAGATTTTTCCCGTAGAAGTGCTGTTTCAACTGAAGTTAACAAGAGCCTGTCCAATCAAAGGGAGCGTTCCATGCAATTG
AACAGTGAAGGCCTTGAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCATTGATCGTCATTACTGTTTCG
TTCTTTTTTGCTTTATACTTTTTTTTTGGACCATCTTTTGTTCATGATGCCAGCAAAACTCCAATATCTCCTCCACCGTACGTTGATCCATATGCTCTTTTAGAG
GACGAGAGAATTTCACAAATAGCTCCTCGCGTAAATTGA

mRNA sequence

Show/hide mRNA sequence

TTTTTGGAAAAACTAAGATGAAACTATTTCTCCCATTGAATTCCTTGGGAGGAAGAAAGCTCTAGCTTGCTAATCTATGGCTGCTCTGCAAATTCTCAAATCAAC
TGTCTCTCCTCCTTCGATCTCTCAGCCGAATTTTGGCGCACAATCAAGCCGGTTCTTCTCGGAGTTGGATTCCACCAGGAGGTTTGTACTGCTTCATGGACGTCG
GAGGAGTATGCGATATGGCTGCGTTTGTAGAAGGTTGAGTTTCCGTTGCTCTGCTCAGGATGCTGATAAGGAAAGCAATGGAGAAGAACCTCCAGAATCATTATT
CATGAAGGAACTGAAGAAGAGAGGTATAACTCCCACTTCCTTGCTTGAGGATGCTAACAACAGTGACTTTGGACTTGGTGGCGAGATGACTGGAGAAAACAGAGA
TTTTTCCCGTAGAAGTGCTGTTTCAACTGAAGTTAACAAGAGCCTGTCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGGGTTGATCCC
TCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCATTGATCGTCATTACTGTTTCGTTCTTTTTTGCTTTATACTTTTTTTTTGG
ACCATCTTTTGTTCATGATGCCAGCAAAACTCCAATATCTCCTCCACCGTACGTTGATCCATATGCTCTTTTAGAGGACGAGAGAATTTCACAAATAGCTCCTCG
CGTAAATTGACTGCCGCATAAAATCCTAATTGGTTGGTTTTCTTTTCTGCTACTTTGTTTCCCTTTCCCAATATTTATTTGATATGATATGTAAATGATTATTAG
CTAGAATTTTTCTTGTTTAATTTACGTTTTTAAGACTCCTGGTCTTGCGCCCTAAATTATTTCTTGAAGGGCTTTAGTTGATTCTTTTTAGTTTGCAGTTGTAGC
TTTAGTTTAAAAAAAAATTGAGGCTTTGAAATTTTAATTAGGTTAAAATATCATTTTAGTCCCTATACTTTGAAGTTTGTTTAATTTTAGTCCCTATATCTTTAA
TAAATCTTAAATTTAGTTCTCAATACTAGTTTATTGTTGATTTCTTAAAAAAAATTTGTTATCTATTAGCATTTTTACTATAAATTTTGAAAATATATTCACATA
TTATATTTCATTG

Protein sequence

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MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDANNSDFGL
GGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPPPYVDPYALLE
DERISQIAPRVN

Lsi03G010050 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome