CuGenDBv2

Gene ID	Lsi03G010350
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Mediator of RNA polymerase II transcription subunit 28
Genome location	chr03:19907092..19909856
RNA-Seq Expression	Lsi03G010350
Synteny	Lsi03G010350
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034456 - Mediator of RNA polymerase II transcription subunit 28

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152267.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus]

1.4e-65

95.04

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP+DQQH LDPQ QSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KN+IIKKQE+LIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_008454378.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]

6.2e-66

96.45

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH LDPQSQSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KNDIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_022149222.1 mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]

1.7e-63

92.91

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MA+RQP+DQQH LDPQ QS Q PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLKNDIIKK ERLIEGWKKDLKDQL KHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_022922953.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata]

9.0e-65

93.62

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+ +DPQ QSSQ PREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLK+DIIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_038904970.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida]

7.4e-67

97.16

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQHPLDPQ QSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLKN+IIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT19 Uncharacterized protein

6.7e-66

95.04

Show/hide

Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP+DQQH LDPQ QSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KN+IIKKQE+LIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A1S3BZ89 mediator of RNA polymerase II transcription subunit 28

3.0e-66

96.45

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH LDPQSQSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KNDIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A5A7TRZ8 Mediator of RNA polymerase II transcription subunit 28

3.0e-66

96.45

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH LDPQSQSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KNDIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A6J1E897 mediator of RNA polymerase II transcription subunit 28

4.4e-65

93.62

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+ +DPQ QSSQ PREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLK+DIIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A6J1JAT8 mediator of RNA polymerase II transcription subunit 28

4.4e-65

93.62

Show/hide

Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+ +DPQ QSSQ PREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLK+DIIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

SwissProt top hits

e value

%identity

Alignment

Q9LFA5 Mediator of RNA polymerase II transcription subunit 28

2.0e-38

69.49

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Query:  EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKNDIIKKQERLIEGW
        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK K+++IKK  RL +  
Subjt:  EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKNDIIKKQERLIEGW

Query:  KKDLKDQLDKHNNELEKV
        +K +K+Q++KH +ELEKV
Subjt:  KKDLKDQLDKHNNELEKV

Arabidopsis top hits

e value

%identity

Alignment

AT3G52860.1 unknown protein

1.4e-39

69.49

Show/hide

Query:  EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKNDIIKKQERLIEGW
        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK K+++IKK  RL +  
Subjt:  EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKNDIIKKQERLIEGW

Query:  KKDLKDQLDKHNNELEKV
        +K +K+Q++KH +ELEKV
Subjt:  KKDLKDQLDKHNNELEKV

Sequences

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CDS sequence

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mRNA sequence

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ATGCCATTATGTTCATGGAGTTACAATATGATGTTGGTTTTGGTTCTGTTTGTTGCTCATATGTTGATGGATATGGCTGAACGACAGCCACTCGACCAACAACATCCACT
TGATCCACAATCGCAATCATCACAACCTCCAAGAGAAGATATGATTGCATATGTGATGGCTTTGGAAGCTGCTCTGCTTCCATGCTTGCCTGCAAGAGAACTACAAGCAA
TAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAAAGACATGCTAGGGATTTCATGGAGGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAACGCGAG
GATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGTTAAAGAATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTG
GAAGAAGGATTTGAAAGACCAGTTAGACAAACATAACAATGAGTTAGAGAAGGTTTAATAGAATAGGCTTGCGATCCCATGATCTATTGTTTAGGTATTTGTAGATCTTG
TCAATTTATATACTTTCACAATTAGTTTATGGTGGGTATTTGTAGATCTTGTCAATTTATATACTTTCACAATTAGTTTATGGTGGGGCTATTGTTTGCTTATATTTTTA
ATGATCATTCTCTCCTTTGTTGGATCTCTTACGAATCTATTTTTCATATTGAATAGAGAAACGTGGGAAATTTTAGAATAATGTGGTCGATTGACCTAAAAGATTTGGTC
ACAATAA

Protein sequence

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MPLCSWSYNMMLVLVLFVAHMLMDMAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQRE
DQPTKVETLRKEISAIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

Lsi03G010350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome