CuGenDBv2

Gene ID	Lsi03G010370
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	calponin homology domain-containing protein DDB_G0272472
Genome location	chr03:19913373..19914648
RNA-Seq Expression	Lsi03G010370
Synteny	Lsi03G010370
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6600295.1 hypothetical protein SDJN03_05528, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-33

82.65

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Query:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ
        MDS+  NLDS+SAS++R N   AIDSESKKDDSGE +SASSKSGRSKF KET+QSTMHGLNKFTSQIKKPPHRKVSP+ WFPRK VDSYLKRKIKMLQ
Subjt:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ

KAG7030955.1 hypothetical protein SDJN02_04992 [Cucurbita argyrosperma subsp. argyrosperma]

6.4e-34

83.67

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Query:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ
        MDS+  NLDSVSAS++R N   AIDSESKKDDSGE +SASSKSGRSKF KET+QSTMHGLNKFTSQIKKPPHRKVSP+ WFPRK VDSYLKRKIKMLQ
Subjt:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ

XP_022941676.1 uncharacterized protein LOC111446963 [Cucurbita moschata]

6.4e-34

83.67

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Query:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ
        MDS+  NLDSVSAS++R N   AIDSESKKDDSGE +SASSKSGRSKF KET+QSTMHGLNKFTSQIKKPPHRKVSP+ WFPRK VDSYLKRKIKMLQ
Subjt:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ

XP_023526939.1 uncharacterized protein LOC111790309 [Cucurbita pepo subsp. pepo]

1.2e-32

81.63

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Query:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ
        MDS+  NLDS S S++R N   AIDSESKKDDSGE +SASSKSGRSKF KET+QSTMHGLNKFTSQIKKPPHRKVSP+ WFPRK VDSYLKRKIKMLQ
Subjt:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ

XP_038903669.1 uncharacterized protein LOC120090199 isoform X1 [Benincasa hispida]

2.0e-35

83.67

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Query:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ
        MDS++LNL+SVSASKNRSN+ T IDSE+KK+DS EP+SA ++SGRSKF KETSQS MHGLNKFTSQIKKPPHRKVSP+KWFPRKNVDSYLKRKIKMLQ
Subjt:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BXZ4 LOW QUALITY PROTEIN: uncharacterized protein LOC103494795

2.2e-32

78.57

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Query:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ
        MDS+ LNLDSV  ++N SN+  A+DS+SKKDDSGEP+SA SKSGRSKF KET+QS MHGLNKFTSQIKKP  RKVSP+KWFPRKN+DSYLKRKIKMLQ
Subjt:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ

A0A5A7TM27 Uncharacterized protein

2.2e-32

78.57

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Query:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ
        MDS+ LNLDSV  ++N SN+  A+DS+SKKDDSGEP+SA SKSGRSKF KET+QS MHGLNKFTSQIKKP  RKVSP+KWFPRKN+DSYLKRKIKMLQ
Subjt:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ

A0A6J1D550 uncharacterized protein LOC111017696

1.7e-32

78.57

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Query:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ
        MD    N+DSVSAS+ R+ ++TA++SESK DDSGEP+SASSKSGRSK SKET+QST+HGLNKFTSQIKKPPHRKVSP+ WFPRK VDSYLKRKIKMLQ
Subjt:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ

A0A6J1FLR6 uncharacterized protein LOC111446963

3.1e-34

83.67

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Query:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ
        MDS+  NLDSVSAS++R N   AIDSESKKDDSGE +SASSKSGRSKF KET+QSTMHGLNKFTSQIKKPPHRKVSP+ WFPRK VDSYLKRKIKMLQ
Subjt:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ

A0A6J1JYB3 calponin homology domain-containing protein DDB_G0272472

5.9e-33

80.61

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Query:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ
        MDS+  NLDSVSAS++R N   AIDSESKKD+SGE +SASSKSGRSKF KET+QS+MHG+NKFTSQIKKPPHRKVSP+ WFPRK VDSYLKRKIKMLQ
Subjt:  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49870.1 unknown protein

1.3e-05

49.25

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Query:  DSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ
        D  E  S+ SK G++K  +ETS      L K  SQ K+   RK SP+ WFPR+  DSYL RKIK LQ
Subjt:  DSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ

AT1G49870.2 unknown protein

6.7e-05

61.76

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Query:  SQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ
        SQ K+   RK SP+ WFPR+  DSYL RKIK LQ
Subjt:  SQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ

Sequences

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CDS sequence

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ATGGATTCATCTTTCTTGAACTTGGACTCTGTTTCAGCATCGAAAAATCGAAGTAACAAACTCACTGCTATCGATTCGGAGAGTAAGAAAGACGACTCTGGCGAGCCTAT
TTCTGCAAGCTCGAAAAGTGGAAGGAGTAAATTCTCGAAAGAGACAAGCCAATCAACAATGCACGGCCTTAACAAATTTACATCACAAATCAAGAAGCCTCCTCACAGGA
AGGTTTCCCCAGTCAAGTGGTTCCCACGCAAGAACGTGGACTCTTACTTGAAGAGAAAAATTAAAATGCTGCAGGTTTAG

mRNA sequence

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CTACTTTCCAATTTTCAAAAAAGAAAAAAGAAAATTAAACACAGTTCTCTCTCTCGTTGATTCAGAGAAAAATTCCAGCGCAAGAAAGGAAAATAATTCGACATTTCTCT
CATTGCAATTGATTCAAACATCTTTCACGTCAAATCTGTTTGATTTCTGAAAGCTTGATTGTCTTCAACCTGCTGCATTTCTGAGAAGATCAGCCATGGATTCATCTTTC
TTGAACTTGGACTCTGTTTCAGCATCGAAAAATCGAAGTAACAAACTCACTGCTATCGATTCGGAGAGTAAGAAAGACGACTCTGGCGAGCCTATTTCTGCAAGCTCGAA
AAGTGGAAGGAGTAAATTCTCGAAAGAGACAAGCCAATCAACAATGCACGGCCTTAACAAATTTACATCACAAATCAAGAAGCCTCCTCACAGGAAGGTTTCCCCAGTCA
AGTGGTTCCCACGCAAGAACGTGGACTCTTACTTGAAGAGAAAAATTAAAATGCTGCAGGTTTAG

Protein sequence

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MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQV

Lsi03G010370 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome