CuGenDBv2

Gene ID	Lsi03G010470
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Integrase
Genome location	chr03:20119188..20128589
RNA-Seq Expression	Lsi03G010470
Synteny	Lsi03G010470
Gene Ontology terms	GO:0006397 - mRNA processing (biological process) GO:0015074 - DNA integration (biological process) GO:0003729 - mRNA binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0032729.1 integrase [Cucumis melo var. makuwa]

6.3e-98

85.46

Show/hide

Query:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM--MHK
        MQTSFRGGSRGRRGG GRRGGGRNYDNR+G NSENSQESSS SRGRGS RGRGFG+NQ GGRGN S IQCFNC+KYGHFQADCWA KNG  N+TM  MHK
Subjt:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM--MHK

Query:  EE-KNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLL
        E+ KNDEG+LFL CSVQD+VVE TWYLDSGCSNHMT NRSIFVTLDES QSEVKTGD+TRLQVKGQGDILVKTKKG KRVT+VFYV GLKHNLLSIGQLL
Subjt:  EE-KNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLL

Query:  QRGQKVSFEGDVCTIKDQTGVLIAKSK
        QRG KVSFEGD+C IKDQ GVLIAK K
Subjt:  QRGQKVSFEGDVCTIKDQTGVLIAKSK

KAA0051300.1 integrase [Cucumis melo var. makuwa]

7.5e-99

80.72

Show/hide

Query:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE
        MQTSFRGGS GRRGG GRRGGGRNYDNR+G NSENSQESSS SRGRGSRRGRGFGRNQ GGRGN S IQCFNC KYGHFQADCWA KNG  N+TM MHKE
Subjt:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE

Query:  E-KNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ
        + KNDEG+LFLACSVQ +VVE TWYLDSGCSNHMT NRSIFVTLDES QSEVKTGD+TRLQVKGQGDILVKTKKG KRVT+VFYV GLKHNLLSIGQLLQ
Subjt:  E-KNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ

Query:  RGQKVSFEGDVCTIKDQTGVLIAKSKKAGSIELRIHRQRIAAIEATSNG
        RG KVSFEGD+C IKDQ GVLIAK       E  IH Q  A +    NG
Subjt:  RGQKVSFEGDVCTIKDQTGVLIAKSKKAGSIELRIHRQRIAAIEATSNG

KAA0060377.1 integrase [Cucumis melo var. makuwa]

4.1e-97

85.84

Show/hide

Query:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE
        MQTSFRGGSRGRRGG GRRGGGRNYDNR+G NSENSQESSS SRGRGS RGRGFGRNQ GGRGN S IQCFNC KYGHFQA+CWA KNG  N+TM MHKE
Subjt:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE

Query:  EKN-DEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ
        +K  DEG+LFLACSVQD+VVE TWYLDSGCSNHMT NRSIFVTLDES QSEVKTGD+TRLQVKGQGDILVKTKKG KRVT+VFYV GLKHNLLSIGQLLQ
Subjt:  EKN-DEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ

Query:  RGQKVSFEGDVCTIKDQTGVLIAKSK
        RG KVSFEGD+C IKDQ GVLIAK K
Subjt:  RGQKVSFEGDVCTIKDQTGVLIAKSK

TYJ95504.1 integrase [Cucumis melo var. makuwa]

4.1e-97

85.84

Show/hide

Query:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE
        MQTSFRGGSRGRRGG GRRGGGRNYDNR+G NSENSQESSS SRGRGS RGRGFGRNQ GGRGN S IQCFNC KYGHFQA+CWA KNG  N+TM MHKE
Subjt:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE

Query:  EKN-DEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ
        +K  DEG+LFLACSVQD+VVE TWYLDSGCSNHMT NRSIFVTLDES QSEVKTGD+TRLQVKGQGDILVKTKKG KRVT+VFYV GLKHNLLSIGQLLQ
Subjt:  EKN-DEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ

Query:  RGQKVSFEGDVCTIKDQTGVLIAKSK
        RG KVSFEGD+C IKDQ GVLIAK K
Subjt:  RGQKVSFEGDVCTIKDQTGVLIAKSK

TYK05177.1 integrase [Cucumis melo var. makuwa]

2.4e-97

79.12

Show/hide

Query:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE
        MQTSFRGGSRGRR G GR+GGGRNYDNR+G NSENSQESSS S+GRGS RGRGFGRNQ GGRGN S IQCFNC+KYGHFQADCWA KNG  N+TM MHKE
Subjt:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE

Query:  E-KNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ
        + KNDEG+LFL CSVQD+VVE TWYLDSGCSNHMT NRSIFVTLDES QSEVKTGD+TRLQVKGQGDILVKTKKG KRVT+VFYV GLKHNLLSIGQLLQ
Subjt:  E-KNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ

Query:  RGQKVSFEGDVCTIKDQTGVLIAKSKKAGSIELRIHRQRIAAIEATSNG
        RG KVSFEGD+C IKDQ GVLI K       E  IH Q  A +    NG
Subjt:  RGQKVSFEGDVCTIKDQTGVLIAKSKKAGSIELRIHRQRIAAIEATSNG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SKA6 Integrase

2.0e-97

74.81

Show/hide

Query:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE
        MQTSFRGGSRGRRGGRGRRGGGRNYDNR   N ENSQE+SS SRGRGS RGRGFGRNQ GGRGN SHIQCFNC+KYGHF ADCW  KNGD N+TM MHKE
Subjt:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE

Query:  E-KNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ
        + KNDEG+LFLACSVQDDVVE TWYLDSGCSNHMT NRSIFVTLDES QSEVKTGD+T+LQVKGQGDILVKTKKG KR+T+VFYV GLKHNLLSIGQLLQ
Subjt:  E-KNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ

Query:  RGQKVSFEGDVCTIKDQTGVLIA--------KSKKA-----GSIELRIHRQRIAAIEATSNGNPIS
        RG KVSFEGD+C I+DQ GVLIA        KS+K        +   + +  I A+E++S+  P S
Subjt:  RGQKVSFEGDVCTIKDQTGVLIA--------KSKKA-----GSIELRIHRQRIAAIEATSNGNPIS

A0A5A7SUA3 Integrase

3.1e-98

85.46

Show/hide

Query:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM--MHK
        MQTSFRGGSRGRRGG GRRGGGRNYDNR+G NSENSQESSS SRGRGS RGRGFG+NQ GGRGN S IQCFNC+KYGHFQADCWA KNG  N+TM  MHK
Subjt:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM--MHK

Query:  EE-KNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLL
        E+ KNDEG+LFL CSVQD+VVE TWYLDSGCSNHMT NRSIFVTLDES QSEVKTGD+TRLQVKGQGDILVKTKKG KRVT+VFYV GLKHNLLSIGQLL
Subjt:  EE-KNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLL

Query:  QRGQKVSFEGDVCTIKDQTGVLIAKSK
        QRG KVSFEGD+C IKDQ GVLIAK K
Subjt:  QRGQKVSFEGDVCTIKDQTGVLIAKSK

A0A5A7U800 Integrase

3.6e-99

80.72

Show/hide

Query:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE
        MQTSFRGGS GRRGG GRRGGGRNYDNR+G NSENSQESSS SRGRGSRRGRGFGRNQ GGRGN S IQCFNC KYGHFQADCWA KNG  N+TM MHKE
Subjt:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE

Query:  E-KNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ
        + KNDEG+LFLACSVQ +VVE TWYLDSGCSNHMT NRSIFVTLDES QSEVKTGD+TRLQVKGQGDILVKTKKG KRVT+VFYV GLKHNLLSIGQLLQ
Subjt:  E-KNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ

Query:  RGQKVSFEGDVCTIKDQTGVLIAKSKKAGSIELRIHRQRIAAIEATSNG
        RG KVSFEGD+C IKDQ GVLIAK       E  IH Q  A +    NG
Subjt:  RGQKVSFEGDVCTIKDQTGVLIAKSKKAGSIELRIHRQRIAAIEATSNG

A0A5D3C044 Integrase

1.2e-97

79.12

Show/hide

Query:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE
        MQTSFRGGSRGRR G GR+GGGRNYDNR+G NSENSQESSS S+GRGS RGRGFGRNQ GGRGN S IQCFNC+KYGHFQADCWA KNG  N+TM MHKE
Subjt:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE

Query:  E-KNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ
        + KNDEG+LFL CSVQD+VVE TWYLDSGCSNHMT NRSIFVTLDES QSEVKTGD+TRLQVKGQGDILVKTKKG KRVT+VFYV GLKHNLLSIGQLLQ
Subjt:  E-KNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ

Query:  RGQKVSFEGDVCTIKDQTGVLIAKSKKAGSIELRIHRQRIAAIEATSNG
        RG KVSFEGD+C IKDQ GVLI K       E  IH Q  A +    NG
Subjt:  RGQKVSFEGDVCTIKDQTGVLIAKSKKAGSIELRIHRQRIAAIEATSNG

A0A5D3CLV1 Integrase

2.0e-97

85.84

Show/hide

Query:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE
        MQTSFRGGSRGRRGG GRRGGGRNYDNR+G NSENSQESSS SRGRGS RGRGFGRNQ GGRGN S IQCFNC KYGHFQA+CWA KNG  N+TM MHKE
Subjt:  MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKE

Query:  EKN-DEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ
        +K  DEG+LFLACSVQD+VVE TWYLDSGCSNHMT NRSIFVTLDES QSEVKTGD+TRLQVKGQGDILVKTKKG KRVT+VFYV GLKHNLLSIGQLLQ
Subjt:  EKN-DEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQ

Query:  RGQKVSFEGDVCTIKDQTGVLIAKSK
        RG KVSFEGD+C IKDQ GVLIAK K
Subjt:  RGQKVSFEGDVCTIKDQTGVLIAKSK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G20980.1 Gag-Pol-related retrotransposon family protein

1.4e-10

39.42

Show/hide

Query:  ESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVK--TGD---DTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQRGQKVSFEGDV-CTI
        E+ W + S  SNHMT +   F TLD S + +VK  +GD    T   V+G GD+   T +G K + +V YV G++ N LS+ QL + G +VS E    C +
Subjt:  ESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVK--TGD---DTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQRGQKVSFEGDV-CTI

Query:  KDQT
         D+T
Subjt:  KDQT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAAACTTCATTCAGAGGTGGTTCACGTGGAAGACGTGGTGGTCGTGGAAGACGAGGAGGTGGAAGAAACTATGATAATAGAAATGGTGGAAATTCAGAAAATTCACA
AGAAAGCTCTTCTTCATCTCGAGGTAGAGGAAGCAGAAGAGGAAGAGGTTTTGGCAGAAACCAAGAAGGAGGTCGAGGTAATTTGTCTCACATTCAATGTTTTAACTGCA
AAAAGTATGGTCATTTTCAAGCAGATTGTTGGGCACCGAAAAATGGAGATGAAAATTCCACCATGATGCATAAAGAGGAGAAAAATGATGAAGGCGTTCTATTTCTTGCA
TGTAGCGTTCAAGACGACGTTGTAGAGTCTACATGGTATCTTGATAGTGGTTGTAGTAACCACATGACAAGAAATAGAAGTATATTTGTTACTTTGGATGAATCTCTCCA
AAGTGAAGTAAAAACTGGTGATGACACTAGATTGCAAGTCAAAGGCCAAGGTGATATTCTTGTGAAGACGAAAAAAGGTATAAAACGAGTTACAGATGTGTTTTATGTTC
TAGGTCTGAAGCATAATCTTTTGAGTATTGGCCAACTGCTTCAACGAGGTCAAAAAGTTTCATTTGAAGGTGATGTATGTACAATCAAAGATCAGACTGGCGTTCTTATT
GCCAAGTCGAAAAAAGCTGGCAGCATTGAATTGAGGATTCACCGTCAGCGAATCGCCGCCATTGAAGCTACGAGCAATGGAAACCCAATCTCTCATGAAGTTGGTTATGG
AGGTTGTATCCGCAAGTTTGTGATGGGCAGAGGCACAAATCACTTCTCCTCCACATTCAAATTTTGTCAACTGAATAAACAACAAAGGATGCAATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTMMHKEEKNDEGVLFLA
CSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQRGQKVSFEGDVCTIKDQTGVLI
AKSKKAGSIELRIHRQRIAAIEATSNGNPISHEVGYGGCIRKFVMGRGTNHFSSTFKFCQLNKQQRMQ

Lsi03G010470 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome