; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G010600 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G010600
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionWD repeat-containing protein 89 homolog
Genome locationchr03:20341199..20342757
RNA-Seq ExpressionLsi03G010600
SyntenyLsi03G010600
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039328 - WD repeat-containing protein 89


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606965.1 WD repeat-containing protein GTS1, partial [Cucurbita argyrosperma subsp. sororia]2.1e-7989.4Show/hide
Query:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ
        SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYS+EG RLWVLGGTNDGTVGYFP+DH KGKNAIESPD++LEGGH+G+VRSVLP TN+LGGFS+
Subjt:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ

Query:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY
        SQGVFGWTGGEDGRLCCW SDDS E NRSWISSTLVIKSPG RRK+RHHPY
Subjt:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY

XP_008454356.1 PREDICTED: WD repeat-containing protein 89 homolog isoform X1 [Cucumis melo]6.0e-7990.73Show/hide
Query:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ
        SLWDWTDGRNEADITDARTLASNSW MGHVDYLVDCHYS EG RLWVLGGTNDGTVGYFPI+   GKNAIESPD++LEGGH+GVVRSVLPTTN+LGGFSQ
Subjt:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ

Query:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY
        SQGVFGWTGGEDGRLCCW SDDSHEMNRSWISSTLVIKSPG RRKNRH PY
Subjt:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY

XP_008454357.1 PREDICTED: WD repeat-containing protein 89 homolog isoform X2 [Cucumis melo]6.0e-7990.73Show/hide
Query:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ
        SLWDWTDGRNEADITDARTLASNSW MGHVDYLVDCHYS EG RLWVLGGTNDGTVGYFPI+   GKNAIESPD++LEGGH+GVVRSVLPTTN+LGGFSQ
Subjt:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ

Query:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY
        SQGVFGWTGGEDGRLCCW SDDSHEMNRSWISSTLVIKSPG RRKNRH PY
Subjt:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY

XP_022143440.1 WD repeat-containing protein 89 homolog [Momordica charantia]1.2e-7990.73Show/hide
Query:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ
        SLWDW+DGRNEADITDARTLASNSW M HVDYLVDCHYSNEG RLWVLGGTNDGTVGYFP+DH KGKNAIESP+++LEGGHVGVVRSVLP TNVLGGFSQ
Subjt:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ

Query:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY
        SQGVFGWTGGEDGRLCCWCSDDSHE  RSWISSTLVIKSP ARRK+RHHPY
Subjt:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY

XP_038906204.1 WD repeat-containing protein GTS1 [Benincasa hispida]5.5e-8090.07Show/hide
Query:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ
        SLWDWTDGRNEADITDARTLASN WTMG VDYLVDCHYS+EG RLWVLGG+NDG +GYFPIDHSKGKNAIESPDI+LEGGH+G++RSVLPTTN LGGFSQ
Subjt:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ

Query:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY
        SQGVFGWTGGEDGRLCCW SDDSHEMNRSWISS+LVIKSPG RRKNRHHPY
Subjt:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY

TrEMBL top hitse value%identityAlignment
A0A0A0KWI9 WD_REPEATS_REGION domain-containing protein8.5e-7990.07Show/hide
Query:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ
        SLWDWTDGRNEADITDARTLASN+W MGHVDYLVDCHYSNEG RLWVLGGTNDGTVGYFPI+ S GK AIESPD++LEGGH+GVVRSVLPTTN+LGGFSQ
Subjt:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ

Query:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY
        SQ VFGWTGGEDGRLCCW SDDS+EMNRSWISSTLVIKSPG RRKNRHHPY
Subjt:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY

A0A1S3BYE3 WD repeat-containing protein 89 homolog isoform X12.9e-7990.73Show/hide
Query:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ
        SLWDWTDGRNEADITDARTLASNSW MGHVDYLVDCHYS EG RLWVLGGTNDGTVGYFPI+   GKNAIESPD++LEGGH+GVVRSVLPTTN+LGGFSQ
Subjt:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ

Query:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY
        SQGVFGWTGGEDGRLCCW SDDSHEMNRSWISSTLVIKSPG RRKNRH PY
Subjt:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY

A0A1S3BZ68 WD repeat-containing protein 89 homolog isoform X22.9e-7990.73Show/hide
Query:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ
        SLWDWTDGRNEADITDARTLASNSW MGHVDYLVDCHYS EG RLWVLGGTNDGTVGYFPI+   GKNAIESPD++LEGGH+GVVRSVLPTTN+LGGFSQ
Subjt:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ

Query:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY
        SQGVFGWTGGEDGRLCCW SDDSHEMNRSWISSTLVIKSPG RRKNRH PY
Subjt:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY

A0A5A7TS28 WD repeat-containing protein 89-like protein isoform X12.9e-7990.73Show/hide
Query:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ
        SLWDWTDGRNEADITDARTLASNSW MGHVDYLVDCHYS EG RLWVLGGTNDGTVGYFPI+   GKNAIESPD++LEGGH+GVVRSVLPTTN+LGGFSQ
Subjt:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ

Query:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY
        SQGVFGWTGGEDGRLCCW SDDSHEMNRSWISSTLVIKSPG RRKNRH PY
Subjt:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY

A0A6J1CNT7 WD repeat-containing protein 89 homolog5.9e-8090.73Show/hide
Query:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ
        SLWDW+DGRNEADITDARTLASNSW M HVDYLVDCHYSNEG RLWVLGGTNDGTVGYFP+DH KGKNAIESP+++LEGGHVGVVRSVLP TNVLGGFSQ
Subjt:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ

Query:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY
        SQGVFGWTGGEDGRLCCWCSDDSHE  RSWISSTLVIKSP ARRK+RHHPY
Subjt:  SQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY

SwissProt top hitse value%identityAlignment
Q5FVP5 WD repeat-containing protein 893.9e-0433.02Show/hide
Query:  DITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGED
        D+TD +         GH+DYL+   Y     RL+V+GGTN G +       + G + + S    L+GGH   VRS   T       S+   +   TGGED
Subjt:  DITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGED

Query:  GRLCCW
         +L  W
Subjt:  GRLCCW

Q944S2 WD repeat-containing protein GTS12.8e-4256.58Show/hide
Query:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ
        S+W+W DG  E ++  AR LAS+SWT  +VDY VDCH    G  LWV+GGT  GTVGYFP+++ K   +I + + IL GGH+ VVRSVL      GG   
Subjt:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ

Query:  SQGVFGWTGGEDGRLCCWCSD-DSHEMNRSWISSTLVIKSPGARRKNRHHPY
        + G+FGWTGGEDGRLCCW SD D+ E+NRSW SS LV+K P  R+KNRH PY
Subjt:  SQGVFGWTGGEDGRLCCWCSD-DSHEMNRSWISSTLVIKSPGARRKNRHHPY

Q9D0R9 WD repeat-containing protein 895.1e-0435.16Show/hide
Query:  GHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCW
        GH+DYL+   Y  +  RL+V+GGTN G +       S G   + S    L GGH   VRS          ++ S+     TGGED +L  W
Subjt:  GHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCW

Arabidopsis top hitse value%identityAlignment
AT2G47790.1 Transducin/WD40 repeat-like superfamily protein2.0e-4356.58Show/hide
Query:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ
        S+W+W DG  E ++  AR LAS+SWT  +VDY VDCH    G  LWV+GGT  GTVGYFP+++ K   +I + + IL GGH+ VVRSVL      GG   
Subjt:  SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQ

Query:  SQGVFGWTGGEDGRLCCWCSD-DSHEMNRSWISSTLVIKSPGARRKNRHHPY
        + G+FGWTGGEDGRLCCW SD D+ E+NRSW SS LV+K P  R+KNRH PY
Subjt:  SQGVFGWTGGEDGRLCCWCSD-DSHEMNRSWISSTLVIKSPGARRKNRHHPY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGATGGTAGCTTATGGGACTGGACAGATGGGAGAAATGAAGCAGATATCACAGATGCTCGCACACTAGCTTCCAACAGTTGGACAATGGGTCATGTTGATTATTT
AGTTGATTGTCACTACTCAAATGAAGGCGGAAGATTGTGGGTTCTTGGAGGTACCAATGATGGCACCGTTGGCTACTTCCCAATTGACCACAGTAAGGGGAAGAATGCCA
TCGAATCACCGGACATTATACTTGAGGGTGGTCACGTTGGCGTCGTTAGAAGTGTCTTGCCCACGACGAACGTATTGGGTGGATTTTCACAGAGCCAAGGTGTGTTTGGA
TGGACAGGTGGAGAAGATGGACGTTTATGTTGTTGGTGTTCGGACGATTCTCATGAAATGAATCGATCCTGGATTTCAAGCACTCTAGTTATTAAGTCACCCGGTGCTCG
GAGGAAAAATAGGCACCATCCTTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGATGGTAGCTTATGGGACTGGACAGATGGGAGAAATGAAGCAGATATCACAGATGCTCGCACACTAGCTTCCAACAGTTGGACAATGGGTCATGTTGATTATTT
AGTTGATTGTCACTACTCAAATGAAGGCGGAAGATTGTGGGTTCTTGGAGGTACCAATGATGGCACCGTTGGCTACTTCCCAATTGACCACAGTAAGGGGAAGAATGCCA
TCGAATCACCGGACATTATACTTGAGGGTGGTCACGTTGGCGTCGTTAGAAGTGTCTTGCCCACGACGAACGTATTGGGTGGATTTTCACAGAGCCAAGGTGTGTTTGGA
TGGACAGGTGGAGAAGATGGACGTTTATGTTGTTGGTGTTCGGACGATTCTCATGAAATGAATCGATCCTGGATTTCAAGCACTCTAGTTATTAAGTCACCCGGTGCTCG
GAGGAAAAATAGGCACCATCCTTACTAAAGATCAACATATGTTTTTTGTGTCTTTGATCATACAATCTCTTAATGTTTCTGTAGCTGTATTAATCATCATGTTGCCTCCC
AACCCCTCAATTTGATGTCTTTTGACTTGCCTCTTTATGGGAGTATTATATAAAAATGGGTTAAAATTAAATGATT
Protein sequenceShow/hide protein sequence
MADGSLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFG
WTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY