; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G010610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G010610
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionWD repeat-containing protein 89 homolog
Genome locationchr03:20344557..20345963
RNA-Seq ExpressionLsi03G010610
SyntenyLsi03G010610
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily
IPR039328 - WD repeat-containing protein 89


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008454356.1 PREDICTED: WD repeat-containing protein 89 homolog isoform X1 [Cucumis melo]9.7e-7092.36Show/hide
Query:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC
        MESIDMDVE+H NAD+++NSSSF+RFGLKNSIQTNFGDDYVFHIAPN DWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC
Subjt:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC

Query:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG
        SSDGTI+SWD+RT QQVSSISAGPSQEIFSFAYGGSN SLLAAG
Subjt:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG

XP_022143440.1 WD repeat-containing protein 89 homolog [Momordica charantia]2.4e-6890.97Show/hide
Query:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC
        ME+IDMDVEEHANADTSTNSSSF+RFGLKNSIQTNFGDDYVFHIAP+ DWTSMAVSLSSNVVKLYSPVTGQYYGECRGH+GTINQISFSVPSTPHVLHSC
Subjt:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC

Query:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG
        SSDGTIRSWDVR   ++SSISAGPSQEIFSFAYGGS+ +LLAAG
Subjt:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG

XP_023522094.1 WD repeat-containing protein 89 homolog [Cucurbita pepo subsp. pepo]7.7e-6790.28Show/hide
Query:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC
        MESIDMDVEE  NAD+S +SSSF+RFGLKN+IQTNFGDDYVFHIAPN DWTSMAVSLSSNVVKLYSPVTGQYYGECRGH GTINQISF+VPSTPHVLHSC
Subjt:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC

Query:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG
        SSDGTIRSWDVR  QQVSSISAGPSQEIFSFAYGGS+M+LLAAG
Subjt:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG

XP_031740194.1 WD repeat-containing protein GTS1 [Cucumis sativus]4.1e-6890.97Show/hide
Query:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC
        MESIDMDVEEH NAD+++NS+SF+RFGLKNSIQTNFGDDYVFHI PN DWTSMAVSLSSNVVKLYSPVTGQYYGEC GHTGT+NQISFSVPSTPHVLHSC
Subjt:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC

Query:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG
        SSDGTI+SWDVRT QQVSSISAG SQEIFSFAYGGSNMSLLAAG
Subjt:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG

XP_038906204.1 WD repeat-containing protein GTS1 [Benincasa hispida]7.9e-7295.83Show/hide
Query:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC
        MESIDMDVEEHANADT+TNSSSF+RFGLKNSIQTNFGDDYVFHIAPN DWTSMAVSLSSNVVKLYSPVTGQY+GECRGHTGTIN+ISFSVPSTPHVLHSC
Subjt:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC

Query:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG
        SSDGTIRSWDVRT QQVSSISAGPSQEIFSFAYGGSNMSLLAAG
Subjt:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG

TrEMBL top hitse value%identityAlignment
A0A0A0KWI9 WD_REPEATS_REGION domain-containing protein2.0e-6890.97Show/hide
Query:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC
        MESIDMDVEEH NAD+++NS+SF+RFGLKNSIQTNFGDDYVFHI PN DWTSMAVSLSSNVVKLYSPVTGQYYGEC GHTGT+NQISFSVPSTPHVLHSC
Subjt:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC

Query:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG
        SSDGTI+SWDVRT QQVSSISAG SQEIFSFAYGGSNMSLLAAG
Subjt:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG

A0A1S3BYE3 WD repeat-containing protein 89 homolog isoform X14.7e-7092.36Show/hide
Query:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC
        MESIDMDVE+H NAD+++NSSSF+RFGLKNSIQTNFGDDYVFHIAPN DWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC
Subjt:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC

Query:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG
        SSDGTI+SWD+RT QQVSSISAGPSQEIFSFAYGGSN SLLAAG
Subjt:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG

A0A5A7TS28 WD repeat-containing protein 89-like protein isoform X14.7e-7092.36Show/hide
Query:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC
        MESIDMDVE+H NAD+++NSSSF+RFGLKNSIQTNFGDDYVFHIAPN DWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC
Subjt:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC

Query:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG
        SSDGTI+SWD+RT QQVSSISAGPSQEIFSFAYGGSN SLLAAG
Subjt:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG

A0A6J1CNT7 WD repeat-containing protein 89 homolog1.2e-6890.97Show/hide
Query:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC
        ME+IDMDVEEHANADTSTNSSSF+RFGLKNSIQTNFGDDYVFHIAP+ DWTSMAVSLSSNVVKLYSPVTGQYYGECRGH+GTINQISFSVPSTPHVLHSC
Subjt:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC

Query:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG
        SSDGTIRSWDVR   ++SSISAGPSQEIFSFAYGGS+ +LLAAG
Subjt:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG

A0A6J1GAT4 WD repeat-containing protein 89 homolog5.4e-6688.89Show/hide
Query:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC
        MESIDMDVEE  NAD+S +SSSF+RFGLKN+IQTNFGDDYVFHIAPN DWT MAVSLSSNVVKLYSPVTGQYYGECRGH GTINQISF+VPS PHVLHSC
Subjt:  MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSC

Query:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG
        SSDGTIRSWDVR  QQVSSISAGPSQEIFSFAYGGS+M+LLAAG
Subjt:  SSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG

SwissProt top hitse value%identityAlignment
A8NEG8 Nuclear distribution protein PAC11.1e-0425.17Show/hide
Query:  DYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFS-------------VPSTPHVLH-----SCSSDGTIRSWDVRTCQQVSSI
        ++V  + P+AD T +A       V+L+ P+TG+   E RGH   +  ++F+             +P+     H     S + D T++ WD +T Q + ++
Subjt:  DYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFS-------------VPSTPHVLH-----SCSSDGTIRSWDVRTCQQVSSI

Query:  SAGPSQEIFSFAYGGSNMSLLAAGDSLLGLAEQKASCMLGGLSCGRC
         AG    + + A+  S   LL++ D          +  +  LS GRC
Subjt:  SAGPSQEIFSFAYGGSNMSLLAAGDSLLGLAEQKASCMLGGLSCGRC

Q8BG40 Katanin p80 WD40 repeat-containing subunit B12.3e-0536.25Show/hide
Query:  APNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSISAGP
        +P+  W  +A +   + VKL+    G+   E  GHTG +N + F      ++L S SSD TIR WD+   Q VS I   P
Subjt:  APNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSISAGP

Q944S2 WD repeat-containing protein GTS13.5e-4664.14Show/hide
Query:  SIDMDVE-EHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPS--TPHVLHS
        S +M+VE ++     S+ + + ++FGLKNSIQTNFG DYVF I P  DWT++AVSLS+N VKLYSPVTGQYYGEC+GH+ T+NQI+FS  S  +PHVLHS
Subjt:  SIDMDVE-EHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPS--TPHVLHS

Query:  CSSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG
        CSSDGTIRSWD R+ QQVS I  G  QEIFSF+YGG+  +LLA G
Subjt:  CSSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG

Q9BVA0 Katanin p80 WD40 repeat-containing subunit B12.3e-0536.25Show/hide
Query:  APNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSISAGP
        +P+  W  +A +   + VKL+    G+   E  GHTG +N + F      ++L S SSD TIR WD+   Q VS I   P
Subjt:  APNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSISAGP

Q9FLX9 Notchless protein homolog1.7e-0528.43Show/hide
Query:  HIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLA
        + +P+  W + A    S  V+L++ +TGQ+    RGH G + Q+S+S  S   +L S S D T++ W++RT +++     G + E+F+  +      +++
Subjt:  HIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLA

Query:  AG
         G
Subjt:  AG

Arabidopsis top hitse value%identityAlignment
AT2G47790.1 Transducin/WD40 repeat-like superfamily protein2.5e-4764.14Show/hide
Query:  SIDMDVE-EHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPS--TPHVLHS
        S +M+VE ++     S+ + + ++FGLKNSIQTNFG DYVF I P  DWT++AVSLS+N VKLYSPVTGQYYGEC+GH+ T+NQI+FS  S  +PHVLHS
Subjt:  SIDMDVE-EHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPS--TPHVLHS

Query:  CSSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG
        CSSDGTIRSWD R+ QQVS I  G  QEIFSF+YGG+  +LLA G
Subjt:  CSSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAG

AT5G49430.1 WD40/YVTN repeat-like-containing domain;Bromodomain1.2e-0432.38Show/hide
Query:  VVKLYSPVTGQYYGECRGHTGTINQISFSV-PSTPHVLHSCSSDGTIRSWDVRTCQQV------------------SSISAGPSQEIFSFAYGGSNMSLL
        V++++    G      RGHTG +  I+FS  P +P+ L S S DGT R WD R  Q                    SS +A  S +IF  A+  S  S+ 
Subjt:  VVKLYSPVTGQYYGECRGHTGTINQISFSV-PSTPHVLHSCSSDGTIRSWDVRTCQQV------------------SSISAGPSQEIFSFAYGGSNMSLL

Query:  AAGDS
          G S
Subjt:  AAGDS

AT5G52820.1 WD-40 repeat family protein / notchless protein, putative1.2e-0628.43Show/hide
Query:  HIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLA
        + +P+  W + A    S  V+L++ +TGQ+    RGH G + Q+S+S  S   +L S S D T++ W++RT +++     G + E+F+  +      +++
Subjt:  HIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLA

Query:  AG
         G
Subjt:  AG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCCATTGATATGGATGTCGAGGAGCACGCCAATGCCGATACGAGTACAAATTCCAGCTCCTTCCAGCGCTTTGGACTCAAGAATTCCATTCAAACCAACTTCGG
TGATGATTACGTTTTTCACATCGCTCCCAATGCTGATTGGACGTCAATGGCGGTGTCATTATCTTCCAATGTTGTGAAGCTATACTCACCAGTGACTGGTCAGTACTATG
GAGAGTGCAGAGGTCACACTGGAACAATCAATCAAATTTCGTTCTCTGTTCCATCAACCCCACATGTATTGCATTCTTGTTCTTCTGATGGAACTATCAGATCTTGGGAT
GTGCGGACTTGTCAGCAGGTTTCATCCATTAGTGCTGGCCCTTCTCAAGAGATCTTCAGCTTTGCATATGGAGGATCAAACATGAGTCTTCTTGCTGCAGGTGATTCTCT
TCTGGGATTGGCGGAACAGAAAGCAAGTTGCATGCTTGGAGGACTCTCATGTGGAAGATGTGACTCAGGTTCTCCCTGA
mRNA sequenceShow/hide mRNA sequence
CTGAAACGGCGTCGTTTTTTTGTGGTAACCCTAACAGTTAATCGATTGGAGCGAACTGGTTGGAAGTTTCAGTGGCGCGCCTCCAACGGTTGGTTCAATTCCCCCATTGA
TTTCCATCTAAACCCTAAAACCCTTCACCCAATTTCTATACTTACTTCACAAACTTGTTCGTAATTTTGCTCTGTTTCATTGCATAGAGAGAGAGAAGAAAAAAAAAAAT
GGAATCCATTGATATGGATGTCGAGGAGCACGCCAATGCCGATACGAGTACAAATTCCAGCTCCTTCCAGCGCTTTGGACTCAAGAATTCCATTCAAACCAACTTCGGTG
ATGATTACGTTTTTCACATCGCTCCCAATGCTGATTGGACGTCAATGGCGGTGTCATTATCTTCCAATGTTGTGAAGCTATACTCACCAGTGACTGGTCAGTACTATGGA
GAGTGCAGAGGTCACACTGGAACAATCAATCAAATTTCGTTCTCTGTTCCATCAACCCCACATGTATTGCATTCTTGTTCTTCTGATGGAACTATCAGATCTTGGGATGT
GCGGACTTGTCAGCAGGTTTCATCCATTAGTGCTGGCCCTTCTCAAGAGATCTTCAGCTTTGCATATGGAGGATCAAACATGAGTCTTCTTGCTGCAGGTGATTCTCTTC
TGGGATTGGCGGAACAGAAAGCAAGTTGCATGCTTGGAGGACTCTCATGTGGAAGATGTGACTCAGGTTCTCCCTGA
Protein sequenceShow/hide protein sequence
MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWD
VRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAGDSLLGLAEQKASCMLGGLSCGRCDSGSP