CuGenDBv2

Gene ID	Lsi03G011070
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA polymerase
Genome location	chr03:21203167..21203817
RNA-Seq Expression	Lsi03G011070
Synteny	Lsi03G011070
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0006351 - transcription, DNA-templated (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0005739 - mitochondrion (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAB4263365.1 unnamed protein product [Prunus armeniaca]

3.5e-77

72.69

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Query:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG
        MKRSYGEE SFTLG AIPLT  D +LIPM ++YA+ISR I+KYAE Y+G+ I RLMIRVYM+GKK +R ALS +ER+S+LS IIQ  L EI PI AR+I 
Subjt:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG

Query:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL
        NR +R+ PT+ITALK   T+LKPFIVADTETLL+DNVH PYAAGLLMVRPG+ I D ++D+YFSEDY+I+LDSFEERSTKVL DLVLRIS IVR+E+  L
Subjt:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL

Query:  TIYFHNFSRFDGILLL
        TIYFHNFSRFDGILLL
Subjt:  TIYFHNFSRFDGILLL

CAB4289961.1 unnamed protein product [Prunus armeniaca]

3.5e-77

72.69

Show/hide

Query:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG
        MKRSYGEE SFTLG AIPLT  D +LIPM ++YA+ISR I+KYAE Y+G+ I RLMIRVYM+GKK +R ALS +ER+S+LS IIQ  L EI PI AR+I 
Subjt:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG

Query:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL
        NR +R+ PT+ITALK   T+LKPFIVADTETLL+DNVH PYAAGLLMVRPG+ I D ++D+YFSEDY+I+LDSFEERSTKVL DLVLRIS IVR+E+  L
Subjt:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL

Query:  TIYFHNFSRFDGILLL
        TIYFHNFSRFDGILLL
Subjt:  TIYFHNFSRFDGILLL

GFS28696.1 hypothetical protein Acr_00g0003340 [Actinidia rufa]

2.7e-77

72.69

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Query:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG
        M RSYGEE SFTLG AIPLT QD +LIPM ++YA+I R + KYAE YDG+ I RLMIRVYM+G+KK+R ALS +ER S+LS IIQ  L EI PI AR+I 
Subjt:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG

Query:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL
        NRK R+ PT+ITALK   T+LKPF+VADTET+L+D+VH PYAAGL+MVRPG  IND M+DTYFSEDY+I+LDSFEERSTKVL DLVLRIS IVR+EK  L
Subjt:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL

Query:  TIYFHNFSRFDGILLL
        TIYFHNFSRFDGILLL
Subjt:  TIYFHNFSRFDGILLL

GFS28697.1 hypothetical protein Acr_00g0003350 [Actinidia rufa]

2.7e-77

72.69

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Query:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG
        M RSYGEE SFTLG AIPLT QD +LIPM ++YA+I R + KYAE YDG+ I RLMIRVYM+G+KK+R ALS +ER S+LS IIQ  L EI PI AR+I 
Subjt:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG

Query:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL
        NRK R+ PT+ITALK   T+LKPF+VADTET+L+D+VH PYAAGL+MVRPG  IND M+DTYFSEDY+I+LDSFEERSTKVL DLVLRIS IVR+EK  L
Subjt:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL

Query:  TIYFHNFSRFDGILLL
        TIYFHNFSRFDGILLL
Subjt:  TIYFHNFSRFDGILLL

QCB20442.1 DNA-polymerase-like [Actinidia chinensis]

1.6e-77

72.69

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Query:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG
        M RSYGEE SFTLG AIPLT QD +LIPM ++YA+I R I+KYAE YDG+ I RLMIRVYM+GKK +R ALS +ER S+LS IIQ  L EI PI AR+I 
Subjt:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG

Query:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL
        NRK R++PT+ITALK S T+LKPF+VADTET+L+DNVH PYAAGL+MVRPG+ I D M+DTYFSEDY+I+LDSFEERSTKVL D VLRIS IV++EK  L
Subjt:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL

Query:  TIYFHNFSRFDGILLL
        TIYFHNFSRFDGILLL
Subjt:  TIYFHNFSRFDGILLL

TrEMBL top hits

e value

%identity

Alignment

A0A4D6FU75 DNA polymerase

7.7e-78

72.69

Show/hide

Query:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG
        M RSYGEE SFTLG AIPLT QD +LIPM ++YA+I R I+KYAE YDG+ I RLMIRVYM+GKK +R ALS +ER S+LS IIQ  L EI PI AR+I 
Subjt:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG

Query:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL
        NRK R++PT+ITALK S T+LKPF+VADTET+L+DNVH PYAAGL+MVRPG+ I D M+DTYFSEDY+I+LDSFEERSTKVL D VLRIS IV++EK  L
Subjt:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL

Query:  TIYFHNFSRFDGILLL
        TIYFHNFSRFDGILLL
Subjt:  TIYFHNFSRFDGILLL

A0A6J5TJE9 DNA-directed DNA polymerase

1.7e-77

72.69

Show/hide

Query:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG
        MKRSYGEE SFTLG AIPLT  D +LIPM ++YA+ISR I+KYAE Y+G+ I RLMIRVYM+GKK +R ALS +ER+S+LS IIQ  L EI PI AR+I 
Subjt:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG

Query:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL
        NR +R+ PT+ITALK   T+LKPFIVADTETLL+DNVH PYAAGLLMVRPG+ I D ++D+YFSEDY+I+LDSFEERSTKVL DLVLRIS IVR+E+  L
Subjt:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL

Query:  TIYFHNFSRFDGILLL
        TIYFHNFSRFDGILLL
Subjt:  TIYFHNFSRFDGILLL

A0A6J5W251 DNA polymerase

1.7e-77

72.69

Show/hide

Query:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG
        MKRSYGEE SFTLG AIPLT  D +LIPM ++YA+ISR I+KYAE Y+G+ I RLMIRVYM+GKK +R ALS +ER+S+LS IIQ  L EI PI AR+I 
Subjt:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG

Query:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL
        NR +R+ PT+ITALK   T+LKPFIVADTETLL+DNVH PYAAGLLMVRPG+ I D ++D+YFSEDY+I+LDSFEERSTKVL DLVLRIS IVR+E+  L
Subjt:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL

Query:  TIYFHNFSRFDGILLL
        TIYFHNFSRFDGILLL
Subjt:  TIYFHNFSRFDGILLL

A0A7J0D761 Multifunctional fusion protein

1.3e-77

72.69

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Query:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG
        M RSYGEE SFTLG AIPLT QD +LIPM ++YA+I R + KYAE YDG+ I RLMIRVYM+G+KK+R ALS +ER S+LS IIQ  L EI PI AR+I 
Subjt:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG

Query:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL
        NRK R+ PT+ITALK   T+LKPF+VADTET+L+D+VH PYAAGL+MVRPG  IND M+DTYFSEDY+I+LDSFEERSTKVL DLVLRIS IVR+EK  L
Subjt:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL

Query:  TIYFHNFSRFDGILLL
        TIYFHNFSRFDGILLL
Subjt:  TIYFHNFSRFDGILLL

A0A7J0D8S5 Multifunctional fusion protein

1.3e-77

72.69

Show/hide

Query:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG
        M RSYGEE SFTLG AIPLT QD +LIPM ++YA+I R + KYAE YDG+ I RLMIRVYM+G+KK+R ALS +ER S+LS IIQ  L EI PI AR+I 
Subjt:  MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIG

Query:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL
        NRK R+ PT+ITALK   T+LKPF+VADTET+L+D+VH PYAAGL+MVRPG  IND M+DTYFSEDY+I+LDSFEERSTKVL DLVLRIS IVR+EK  L
Subjt:  NRKHRNNPTYITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEIL

Query:  TIYFHNFSRFDGILLL
        TIYFHNFSRFDGILLL
Subjt:  TIYFHNFSRFDGILLL

SwissProt top hits

e value

%identity

Alignment

P10582 DNA polymerase

2.8e-24

33.48

Show/hide

Query:  GEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQG---KLCEINPIRARKIGNR
        G   + TL +AI LT  D   I  + I   I   + KYAE Y    ++ + +R Y EG     +A    + ES     ++G   K  +IN +   K+G R
Subjt:  GEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQG---KLCEINPIRARKIGNR

Query:  KHRNNPTYITALKVSSTKLKPFIVADTETLL-------VDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRK
          R   +YI   K        F VAD ETLL       VD  H+PYA G +MV   K +N   + T+++ DY+ V   F + S K+L +++ RI   V++
Subjt:  KHRNNPTYITALKVSSTKLKPFIVADTETLL-------VDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRK

Query:  EKEILTIYFHNFSRFDGILLL
            + +YFHN S+FDGI++L
Subjt:  EKEILTIYFHNFSRFDGILLL

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

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ATGAAGCGATCTTACGGGGAGGAGTTTTCATTTACTCTTGGTGAGGCTATCCCCTTAACAACTCAAGATAGTCAGTTAATTCCTATGAAAGATATCTATGCAAATATATC
ACGATATATACTGAAATATGCTGAATATTACGACGGGAATTCTATAAAAAGACTGATGATTCGAGTTTATATGGAGGGTAAAAAGAAAGAAAGGAAAGCCTTATCAGAAA
AGGAGAGAGAAAGCACTCTTTCTGAAATCATTCAAGGCAAATTGTGCGAGATCAATCCAATAAGAGCAAGAAAGATTGGTAATAGAAAGCATCGTAACAATCCTACCTAT
ATCACAGCGCTGAAAGTATCTAGCACTAAGCTGAAACCATTCATTGTTGCTGATACCGAAACTCTGCTGGTTGATAACGTTCATATGCCTTATGCTGCTGGTCTCTTGAT
GGTTCGTCCCGGTAAACCTATCAATGATCAGATGATGGATACCTACTTCAGTGAGGACTACACAATCGTCCTGGATTCCTTTGAAGAAAGGAGTACTAAGGTTCTTCGTG
ACTTGGTATTGAGGATATCCGCGATAGTTAGAAAAGAGAAAGAGATTCTCACAATTTACTTCCACAACTTCTCGCGATTCGATGGAATTTTATTGCTTTAA

mRNA sequence

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Protein sequence

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MKRSYGEEFSFTLGEAIPLTTQDSQLIPMKDIYANISRYILKYAEYYDGNSIKRLMIRVYMEGKKKERKALSEKERESTLSEIIQGKLCEINPIRARKIGNRKHRNNPTY
ITALKVSSTKLKPFIVADTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRISAIVRKEKEILTIYFHNFSRFDGILLL

Lsi03G011070 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome