; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G011230 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G011230
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription factor upbeat1
Genome locationchr03:21439557..21439829
RNA-Seq ExpressionLsi03G011230
SyntenyLsi03G011230
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038125.1 basic helix-loop-helix protein [Cucumis melo var. makuwa]3.8e-2575.53Show/hide
Query:  MEVLAKDMLRNQVSEGRIVKQVKKKLPTASSR----SEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
        ME+LAKD     VS+ RI KQV KK     SR    SEKRICLKRI++LRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVH+LNGSD+
Subjt:  MEVLAKDMLRNQVSEGRIVKQVKKKLPTASSR----SEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
KAG6787023.1 hypothetical protein POTOM_008650 [Populus tomentosa]6.5e-0952Show/hide
Query:  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
        GRI+ + + +   +S+R+   I  +R++ L+K+IP SESM L+GLFRETADYI+ LQM+VR+MQ +V +L GSDD
Subjt:  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
KGN58133.1 hypothetical protein Csa_017541 [Cucumis sativus]3.8e-2573.4Show/hide
Query:  MEVLAKDMLRNQVSEGRIVKQVKKK----LPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
        ME+LAKD     VS+ RI KQV KK    +  +S  SEKRICLKRI+RL+KM+PKSESMELNGLFRETADYIVWLQMKVRMMQALVH+LNGSD+
Subjt:  MEVLAKDMLRNQVSEGRIVKQVKKK----LPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
XP_002301522.1 transcription factor UPBEAT1 [Populus trichocarpa]2.5e-0850.67Show/hide
Query:  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
        GRI+ + + +   ++ RS   I  +R++ L+K+IP SESM L+GLFRETADYI+ LQM+V++MQ +V +L GSDD
Subjt:  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
XP_034911859.1 transcription factor UPBEAT1-like [Populus alba]6.5e-0952Show/hide
Query:  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
        GRI+ + + +   +S+R+   I  +R++ L+K+IP SESM L+GLFRETADYI+ LQM+VR+MQ +V +L GSDD
Subjt:  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
TrEMBL top hitse value%identityAlignment
A0A0A0L8J6 Uncharacterized protein1.8e-2573.4Show/hide
Query:  MEVLAKDMLRNQVSEGRIVKQVKKK----LPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
        ME+LAKD     VS+ RI KQV KK    +  +S  SEKRICLKRI+RL+KM+PKSESMELNGLFRETADYIVWLQMKVRMMQALVH+LNGSD+
Subjt:  MEVLAKDMLRNQVSEGRIVKQVKKK----LPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
A0A3G0Z5L8 Basic helix-loop-helix protein1.2e-0850.67Show/hide
Query:  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
        GRI+ + + +   ++ RS   I  +R++ L+K+IP SESM L+GLFRETADYI+ LQM+V++MQ +V +L GSDD
Subjt:  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
A0A4V5ZXB7 Uncharacterized protein3.2e-0952Show/hide
Query:  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
        GRI+ + + +   +S+R+   I  +R++ L+K+IP SESM L+GLFRETADYI+ LQM+VR+MQ +V +L GSDD
Subjt:  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
A0A5A7T9M0 Basic helix-loop-helix protein1.8e-2575.53Show/hide
Query:  MEVLAKDMLRNQVSEGRIVKQVKKKLPTASSR----SEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
        ME+LAKD     VS+ RI KQV KK     SR    SEKRICLKRI++LRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVH+LNGSD+
Subjt:  MEVLAKDMLRNQVSEGRIVKQVKKKLPTASSR----SEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
B9GSV5 Uncharacterized protein1.2e-0850.67Show/hide
Query:  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
        GRI+ + + +   ++ RS   I  +R++ L+K+IP SESM L+GLFRETADYI+ LQM+V++MQ +V +L GSDD
Subjt:  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD
SwissProt top hitse value%identityAlignment
O22901 Transcription factor UPBEAT11.4e-0637.04Show/hide
Query:  MLRNQVSEGRIVKQ--VKKKLPTASSRSEKRICLKRIKRLRKMIPKSESME-LNGLFRETADYIVWLQMKVRMMQALVHIL
        ++R Q +   +VK+  ++ +    +SR   R   +R+K L++++P +++ E L+GLFR+TADYI+ L+MKV++MQ +V +L
Subjt:  MLRNQVSEGRIVKQ--VKKKLPTASSRSEKRICLKRIKRLRKMIPKSESME-LNGLFRETADYIVWLQMKVRMMQALVHIL
Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators1.0e-0737.04Show/hide
Query:  MLRNQVSEGRIVKQ--VKKKLPTASSRSEKRICLKRIKRLRKMIPKSESME-LNGLFRETADYIVWLQMKVRMMQALVHIL
        ++R Q +   +VK+  ++ +    +SR   R   +R+K L++++P +++ E L+GLFR+TADYI+ L+MKV++MQ +V +L
Subjt:  MLRNQVSEGRIVKQ--VKKKLPTASSRSEKRICLKRIKRLRKMIPKSESME-LNGLFRETADYIVWLQMKVRMMQALVHIL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTTTTGGCGAAAGATATGCTCCGAAATCAAGTTTCGGAAGGGCGAATCGTGAAACAAGTCAAGAAGAAGCTACCGACAGCGTCGTCGAGGTCGGAGAAAAGGAT
TTGCTTGAAGAGGATTAAGAGGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGGCTTTTTAGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGA
AGGTGAGGATGATGCAAGCTTTGGTTCATATACTGAATGGCTCTGACGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTTTTGGCGAAAGATATGCTCCGAAATCAAGTTTCGGAAGGGCGAATCGTGAAACAAGTCAAGAAGAAGCTACCGACAGCGTCGTCGAGGTCGGAGAAAAGGAT
TTGCTTGAAGAGGATTAAGAGGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGGCTTTTTAGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGA
AGGTGAGGATGATGCAAGCTTTGGTTCATATACTGAATGGCTCTGACGATTGA
Protein sequenceShow/hide protein sequence
MEVLAKDMLRNQVSEGRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD