; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G011270 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G011270
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr03:21493702..21495248
RNA-Seq ExpressionLsi03G011270
SyntenyLsi03G011270
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038119.1 Zinc knuckle family protein isoform 1 [Cucumis melo var. makuwa]6.2e-11094.5Show/hide
Query:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK
        S +AYGNDRVRGRSSHSKSPAHPPYSGSSF SYDSYQNK A+GRTEGWDNERR SDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK
Subjt:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK

Query:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF
        HRETIREMRESYTKKL HLRGTHAKQWDEFLQLDAQRRQQQVHQQMAAS F GYKQHNYSEYEGGSVN+HYEGANL ALDSRSKYQNHMENYPSRPHGNF
Subjt:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF

Query:  GEFQRQRHDDYENAYKRY
        GEFQRQR DDYENAYKRY
Subjt:  GEFQRQRHDDYENAYKRY

XP_008447472.1 PREDICTED: uncharacterized protein LOC103489910 [Cucumis melo]6.2e-11094.5Show/hide
Query:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK
        S +AYGNDRVRGRSSHSKSPAHPPYSGSSF SYDSYQNK A+GRTEGWDNERR SDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK
Subjt:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK

Query:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF
        HRETIREMRESYTKKL HLRGTHAKQWDEFLQLDAQRRQQQVHQQMAAS F GYKQHNYSEYEGGSVN+HYEGANL ALDSRSKYQNHMENYPSRPHGNF
Subjt:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF

Query:  GEFQRQRHDDYENAYKRY
        GEFQRQR DDYENAYKRY
Subjt:  GEFQRQRHDDYENAYKRY

XP_011651535.1 uncharacterized protein LOC101215062 isoform X2 [Cucumis sativus]1.8e-10994.04Show/hide
Query:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK
        S +AYGNDRVRGRSSHSKSPAHPPYSGSSF SYDSYQNK+A+GRTEGWDNERR SDLQSSRQFEYPAFPQSLEELE+EYKREATELGKIRDKEEDEENYK
Subjt:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK

Query:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF
        +RETIREMRESYTKKL HLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGF GYKQHNYSEYEGGSVN+HYEGANL ALDSRSKYQNHMENYPSRPHGNF
Subjt:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF

Query:  GEFQRQRHDDYENAYKRY
        GEFQRQR DDYENAYKRY
Subjt:  GEFQRQRHDDYENAYKRY

XP_038905438.1 uncharacterized protein LOC120091471 isoform X1 [Benincasa hispida]1.8e-10993.61Show/hide
Query:  ISFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENY
        +  +AYGNDRVRGRSSHSKSPAHPPYSG S SSYDSYQNKSA+GRTEGWDNERR SDLQSSRQFEYPAFPQSLEELEMEYKREA ELGKIRDKEEDEENY
Subjt:  ISFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENY

Query:  KHRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGN
        KHRETIREMRESYTKKL H+RGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANL ALDSRSKYQNHMENYPSRPHGN
Subjt:  KHRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGN

Query:  FGEFQRQRHDDYENAYKRY
        FGEFQRQR DDYENA+KRY
Subjt:  FGEFQRQRHDDYENAYKRY

XP_038905439.1 uncharacterized protein LOC120091471 isoform X2 [Benincasa hispida]1.1e-10994.5Show/hide
Query:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK
        S +AYGNDRVRGRSSHSKSPAHPPYSG S SSYDSYQNKSA+GRTEGWDNERR SDLQSSRQFEYPAFPQSLEELEMEYKREA ELGKIRDKEEDEENYK
Subjt:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK

Query:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF
        HRETIREMRESYTKKL H+RGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANL ALDSRSKYQNHMENYPSRPHGNF
Subjt:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF

Query:  GEFQRQRHDDYENAYKRY
        GEFQRQR DDYENA+KRY
Subjt:  GEFQRQRHDDYENAYKRY

TrEMBL top hitse value%identityAlignment
A0A0A0L866 CCHC-type domain-containing protein8.7e-11094.04Show/hide
Query:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK
        S +AYGNDRVRGRSSHSKSPAHPPYSGSSF SYDSYQNK+A+GRTEGWDNERR SDLQSSRQFEYPAFPQSLEELE+EYKREATELGKIRDKEEDEENYK
Subjt:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK

Query:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF
        +RETIREMRESYTKKL HLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGF GYKQHNYSEYEGGSVN+HYEGANL ALDSRSKYQNHMENYPSRPHGNF
Subjt:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF

Query:  GEFQRQRHDDYENAYKRY
        GEFQRQR DDYENAYKRY
Subjt:  GEFQRQRHDDYENAYKRY

A0A1S3BHI0 uncharacterized protein LOC1034899103.0e-11094.5Show/hide
Query:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK
        S +AYGNDRVRGRSSHSKSPAHPPYSGSSF SYDSYQNK A+GRTEGWDNERR SDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK
Subjt:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK

Query:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF
        HRETIREMRESYTKKL HLRGTHAKQWDEFLQLDAQRRQQQVHQQMAAS F GYKQHNYSEYEGGSVN+HYEGANL ALDSRSKYQNHMENYPSRPHGNF
Subjt:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF

Query:  GEFQRQRHDDYENAYKRY
        GEFQRQR DDYENAYKRY
Subjt:  GEFQRQRHDDYENAYKRY

A0A5D3DAF0 Zinc knuckle family protein isoform 13.0e-11094.5Show/hide
Query:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK
        S +AYGNDRVRGRSSHSKSPAHPPYSGSSF SYDSYQNK A+GRTEGWDNERR SDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK
Subjt:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK

Query:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF
        HRETIREMRESYTKKL HLRGTHAKQWDEFLQLDAQRRQQQVHQQMAAS F GYKQHNYSEYEGGSVN+HYEGANL ALDSRSKYQNHMENYPSRPHGNF
Subjt:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF

Query:  GEFQRQRHDDYENAYKRY
        GEFQRQR DDYENAYKRY
Subjt:  GEFQRQRHDDYENAYKRY

A0A6J1DWP5 uncharacterized protein LOC111023835 isoform X29.7e-10993.12Show/hide
Query:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK
        S +AYGNDR RGRSSHSKSPAHPPYSGSSF+SYDSYQNKSA+GRTEGWDNERR SDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK
Subjt:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK

Query:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF
        HRETIREMRE+Y KKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEY+GGSVNSHY+GANL  LDSRSKY NHMENYPSRPHGNF
Subjt:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF

Query:  GEFQRQRHDDYENAYKRY
        GEFQRQR DDY NAYKRY
Subjt:  GEFQRQRHDDYENAYKRY

A0A6J1F1P5 uncharacterized protein LOC111441584 isoform X21.6e-10894.04Show/hide
Query:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK
        S +AYGNDRVRGRSSHSKSPA+ PYSGSSFSSYDSYQNKSA+GRTEGWD+ERR SDLQSSRQFEYPAFPQSLEELEMEYKREA ELGKIRDKEEDEENYK
Subjt:  SFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK

Query:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF
        HRETIREMRE+YTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEY+GGSVNSHYEGANL ALDSRSKYQNHMENYPSRPHGNF
Subjt:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHMENYPSRPHGNF

Query:  GEFQRQRHDDYENAYKRY
        GEFQRQR DDY NAYKRY
Subjt:  GEFQRQRHDDYENAYKRY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G62330.1 Zinc knuckle (CCHC-type) family protein4.4e-5356.76Show/hide
Query:  EAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERR--VSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK
        +AYG+DR R RS+HSKSP  P YSG     YD  + + +  R+E WD ER    SD+Q S QFE P FPQ+LEELE+EY R+A EL K RDKEEDEEN K
Subjt:  EAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERR--VSDLQSSRQFEYPAFPQSLEELEMEYKREATELGKIRDKEEDEENYK

Query:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQH-NYSEYEGG--SVNSHYEGANLPALDSRSKYQNHMENYPSR-P
        HRETIRE+RESY KKLA LRG +AKQWD+FLQLDAQRRQQQ  QQ +   +  Y+Q   Y+E++ G  S    Y G N+P +DS+ +Y NH +NY SR  
Subjt:  HRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQH-NYSEYEGG--SVNSHYEGANLPALDSRSKYQNHMENYPSR-P

Query:  HGNFGEFQRQRHDDYENAYKRY
          N+G FQRQR ++Y  AY RY
Subjt:  HGNFGEFQRQRHDDYENAYKRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTTTGTATGATTTTATGATGATCACAATGAATTTGACCACAACATATACTCGCGTTGATCTATTATTAACATTGCTCTTCATTTCTTTTGAAGCTTATGGCAA
TGACAGAGTTAGAGGTCGTTCAAGCCACTCAAAGTCTCCAGCTCATCCACCCTATTCTGGCAGCTCGTTCAGTTCATATGATAGTTATCAGAACAAGAGTGCATTTGGTA
GAACCGAAGGATGGGATAACGAGAGAAGAGTATCTGATTTGCAATCTAGTCGTCAGTTTGAGTATCCAGCTTTTCCCCAATCTCTTGAAGAATTGGAGATGGAGTATAAA
AGGGAAGCAACTGAACTTGGAAAGATTCGTGATAAAGAAGAAGATGAAGAAAATTATAAACACCGTGAGACTATAAGGGAGATGAGAGAGAGCTACACGAAGAAATTGGC
TCATTTGAGGGGCACACATGCAAAGCAGTGGGATGAGTTTCTCCAACTTGATGCCCAAAGGCGTCAGCAACAAGTGCACCAACAAATGGCCGCTTCAGGTTTTGCTGGGT
ATAAGCAGCATAACTATTCTGAATATGAAGGTGGCTCAGTCAATTCCCACTATGAAGGGGCTAATTTACCGGCCCTCGATTCAAGGAGCAAGTATCAAAATCATATGGAG
AATTATCCTTCAAGACCTCATGGTAATTTTGGGGAGTTTCAACGTCAGAGGCATGATGATTACGAGAATGCTTACAAACGATACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCTTTGTATGATTTTATGATGATCACAATGAATTTGACCACAACATATACTCGCGTTGATCTATTATTAACATTGCTCTTCATTTCTTTTGAAGCTTATGGCAA
TGACAGAGTTAGAGGTCGTTCAAGCCACTCAAAGTCTCCAGCTCATCCACCCTATTCTGGCAGCTCGTTCAGTTCATATGATAGTTATCAGAACAAGAGTGCATTTGGTA
GAACCGAAGGATGGGATAACGAGAGAAGAGTATCTGATTTGCAATCTAGTCGTCAGTTTGAGTATCCAGCTTTTCCCCAATCTCTTGAAGAATTGGAGATGGAGTATAAA
AGGGAAGCAACTGAACTTGGAAAGATTCGTGATAAAGAAGAAGATGAAGAAAATTATAAACACCGTGAGACTATAAGGGAGATGAGAGAGAGCTACACGAAGAAATTGGC
TCATTTGAGGGGCACACATGCAAAGCAGTGGGATGAGTTTCTCCAACTTGATGCCCAAAGGCGTCAGCAACAAGTGCACCAACAAATGGCCGCTTCAGGTTTTGCTGGGT
ATAAGCAGCATAACTATTCTGAATATGAAGGTGGCTCAGTCAATTCCCACTATGAAGGGGCTAATTTACCGGCCCTCGATTCAAGGAGCAAGTATCAAAATCATATGGAG
AATTATCCTTCAAGACCTCATGGTAATTTTGGGGAGTTTCAACGTCAGAGGCATGATGATTACGAGAATGCTTACAAACGATACTAATTTGTTAACCAGGAAGTAAGTTG
GATTCAGATCCATCTTGGGTAGGCAGAATGCATGGAGGAACGTCTAACGAAAGGTAAGTATGTATCTTACGGTCTTGGACTGAGTAGCATCCGTAGTAGCCTACTTCCAG
TTGTTTTTATAGTTAAGCTTAATAGTTCAGCTGGTTCGGAACTTGTTGTAAAGAGCGGCATGGAATGTCATCTTGGATTTATTAGTCAGATGAAATTCTCATGAACGGTT
GAGATTTTGAATTAGTTATAAATTGATACCTTGGCAAACTTGCGAGCGTTGGATAGTTTACTAGTTGATATGATTGTGTTTATATACTTTTCTGAAAATCTAAACTCTTT
CCCAGAATCCCACAACCCTAATCCAGGAAACTATAGGTATGG
Protein sequenceShow/hide protein sequence
MVSLYDFMMITMNLTTTYTRVDLLLTLLFISFEAYGNDRVRGRSSHSKSPAHPPYSGSSFSSYDSYQNKSAFGRTEGWDNERRVSDLQSSRQFEYPAFPQSLEELEMEYK
REATELGKIRDKEEDEENYKHRETIREMRESYTKKLAHLRGTHAKQWDEFLQLDAQRRQQQVHQQMAASGFAGYKQHNYSEYEGGSVNSHYEGANLPALDSRSKYQNHME
NYPSRPHGNFGEFQRQRHDDYENAYKRY