CuGenDBv2

Gene ID	Lsi03G011330
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Transmembrane protein
Genome location	chr03:21617226..21617675
RNA-Seq Expression	Lsi03G011330
Synteny	Lsi03G011330
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7012062.1 hypothetical protein SDJN02_26970, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.8e-35

65.71

Show/hide

Query:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE
        +++SVRKEITM HIFFF+FHST         TKDFHG A  RSWIP LCSLLF LGIIWAVRYKT   L+       + +K+ R         +KRK VE
Subjt:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE

Query:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS
        FDLLKEVDALRRAKS RVEAK VRKWSSRDFITLFFFSVS
Subjt:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS

XP_004139828.2 uncharacterized protein LOC101213346 [Cucumis sativus]

3.4e-35

65.71

Show/hide

Query:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE
        +++SVRKEITM HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWAVRYKT   ++       + +K+ R         +KRK +E
Subjt:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE

Query:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS
        FDLLKEVDALRRAKS RVEAK VRKWSSRDFITLFFFSVS
Subjt:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS

XP_008447121.1 PREDICTED: uncharacterized protein LOC103489644 [Cucumis melo]

3.4e-35

65.71

Show/hide

Query:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE
        +++SVRKEITM HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWAVRYKT   ++       + +K+ R         +KRK +E
Subjt:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE

Query:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS
        FDLLKEVDALRRAKS RVEAK VRKWSSRDFITLFFFSVS
Subjt:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS

XP_022952110.1 uncharacterized protein LOC111454873 [Cucurbita moschata]

5.8e-35

65.71

Show/hide

Query:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE
        +++SVRKEITM HIFFF+FHST         TKDFHG A  RSWIP LCSLLF LGIIWAVRYKT   L+       + +K+ R         +KRK VE
Subjt:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE

Query:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS
        FDLLKEVDALRRAKS RVEAK VRKWSSRDFITLFFFSVS
Subjt:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS

XP_023553637.1 uncharacterized protein LOC111811128 [Cucurbita pepo subsp. pepo]

5.8e-35

65.71

Show/hide

Query:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE
        +++SVRKEITM HIFFF+FHST         TKDFHG A  RSWIP LCSLLF LGIIWAVRYKT   L+       + +K+ R         +KRK VE
Subjt:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE

Query:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS
        FDLLKEVDALRRAKS RVEAK VRKWSSRDFITLFFFSVS
Subjt:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K424 Uncharacterized protein

1.6e-35

65.71

Show/hide

Query:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE
        +++SVRKEITM HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWAVRYKT   ++       + +K+ R         +KRK +E
Subjt:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE

Query:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS
        FDLLKEVDALRRAKS RVEAK VRKWSSRDFITLFFFSVS
Subjt:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS

A0A1S3BHA3 uncharacterized protein LOC103489644

1.6e-35

65.71

Show/hide

Query:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE
        +++SVRKEITM HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWAVRYKT   ++       + +K+ R         +KRK +E
Subjt:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE

Query:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS
        FDLLKEVDALRRAKS RVEAK VRKWSSRDFITLFFFSVS
Subjt:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS

A0A5A7U7C4 Putative transmembrane protein

1.6e-35

65.71

Show/hide

Query:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE
        +++SVRKEITM HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWAVRYKT   ++       + +K+ R         +KRK +E
Subjt:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE

Query:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS
        FDLLKEVDALRRAKS RVEAK VRKWSSRDFITLFFFSVS
Subjt:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS

A0A6J1GKU6 uncharacterized protein LOC111454873

2.8e-35

65.71

Show/hide

Query:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE
        +++SVRKEITM HIFFF+FHST         TKDFHG A  RSWIP LCSLLF LGIIWAVRYKT   L+       + +K+ R         +KRK VE
Subjt:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE

Query:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS
        FDLLKEVDALRRAKS RVEAK VRKWSSRDFITLFFFSVS
Subjt:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS

A0A6J1I0X4 uncharacterized protein LOC111468053

4.8e-35

65.71

Show/hide

Query:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE
        +++SVRKEITM HIFFF+FHST         TKDFHG A  RSWIP LCSLLF LGIIWAVRYKT   L+       + +K+ R         +KRK VE
Subjt:  KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVE

Query:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS
        FDLLKEVDALRRAKS RVEAK VRKWSSRDFITLFFFSVS
Subjt:  FDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G12870.1 unknown protein

3.5e-30

52.82

Show/hide

Query:  AKLNSVRKEITMFHIFFFVFH------------STTKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTR---RMLKPIWRSCWKGK--KKTRFAVKRKW
        ++++SVR+EIT  +IFFF+FH            S++     +A KRSWIP LC+LL  LGIIWAVRYK+     + K + R     K  +K    +K+K 
Subjt:  AKLNSVRKEITMFHIFFFVFH------------STTKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTR---RMLKPIWRSCWKGK--KKTRFAVKRKW

Query:  VEFDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS
        +EFDLLKEVDALRRAKS RVE+K V+KWS+RDF+TLFFFSVS
Subjt:  VEFDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGAAACTCAACTCTGTGAGAAAAGAAATCACAATGTTTCACATCTTCTTCTTCGTCTTCCACTCCACGACCAAGGATTTCCATGGCGCAGCTGGTAAAAGATCATG
GATTCCCTTGCTCTGTTCTCTCTTGTTTTATCTGGGTATCATTTGGGCGGTGAGATACAAGACAAGACGAATGTTGAAGCCCATTTGGAGAAGCTGCTGGAAAGGGAAAA
AGAAGACAAGATTTGCTGTCAAAAGGAAATGGGTTGAATTTGATTTGCTAAAGGAGGTGGATGCGCTAAGGAGGGCAAAGAGTCCGAGGGTTGAAGCTAAGGATGTGAGA
AAATGGTCTTCAAGGGATTTCATTACTCTATTTTTCTTCTCTGTTTCTTTGGATTATTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAKLNSVRKEITMFHIFFFVFHSTTKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTRFAVKRKWVEFDLLKEVDALRRAKSPRVEAKDVR
KWSSRDFITLFFFSVSLDY

Lsi03G011330 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome