CuGenDBv2

Gene ID	Lsi03G011370
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	chr03:21626573..21636187
RNA-Seq Expression	Lsi03G011370
Synteny	Lsi03G011370
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR017896 - 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 - 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR036001 - Photosystem antenna protein-like superfamily IPR044900 - Photosystem II CP43 reaction centre protein superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ADW82087.1 photosystem II CP43 protein, partial [Leiosporoceros dussii]

4.9e-15

87.76

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Query:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSR
        +RLGANVGSAQGPTGLGKYLMRSPTGE+IFGGETMRFWDLRAP   S R
Subjt:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSR

QAU08405.1 PsbC, partial [Tetradoxa omeiensis]

6.4e-15

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Query:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSRI
        +RLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP     R+
Subjt:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSRI

RZC86169.1 hypothetical protein C5167_016359 [Papaver somniferum]

2.2e-15

91.67

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Query:  IDTFSKRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP
        ID   +RLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP
Subjt:  IDTFSKRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP

YP_009531767.1 CP43 chlorophyll apoprotein of photosystem II [Leiosporoceros dussii]

4.9e-15

87.76

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Query:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSR
        +RLGANVGSAQGPTGLGKYLMRSPTGE+IFGGETMRFWDLRAP   S R
Subjt:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSR

YP_009869700.1 photosystem II CP43 chlorophyll apoprotein [Marathrum foeniculaceum]

6.4e-15

85.71

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Query:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSR
        +RLGAN+GSAQGPTGLGKYLMRSPTGE+IFGGETMRFWDLRAP   S R
Subjt:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSR

TrEMBL top hits

e value

%identity

Alignment

A0A1W5PXA4 Photosystem II CP43 reaction center protein

3.1e-15

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Query:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSRI
        +RLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP     R+
Subjt:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSRI

A0A385KE16 Photosystem II CP43 reaction center protein

2.4e-15

87.76

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Query:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSR
        +RLGANVGSAQGPTGLGKYLMRSPTGE+IFGGETMRFWDLRAP   S R
Subjt:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSR

A0A453M4Z7 Uncharacterized protein

1.8e-15

95.56

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Query:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTF
        +RLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP F
Subjt:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTF

A0A6M8TT86 Photosystem II CP43 reaction center protein

3.1e-15

85.71

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Query:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSR
        +RLGAN+GSAQGPTGLGKYLMRSPTGE+IFGGETMRFWDLRAP   S R
Subjt:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSR

F6KK94 Photosystem II CP43 reaction center protein (Fragment)

2.4e-15

87.76

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Query:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSR
        +RLGANVGSAQGPTGLGKYLMRSPTGE+IFGGETMRFWDLRAP   S R
Subjt:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSR

SwissProt top hits

e value

%identity

Alignment

A1E9Z4 Photosystem II CP43 reaction center protein

1.9e-17

97.67

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Query:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP
        +RLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP
Subjt:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP

A4QJB1 Photosystem II CP43 reaction center protein

1.9e-17

97.67

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Query:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP
        +RLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP
Subjt:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP

A4QJJ5 Photosystem II CP43 reaction center protein

1.9e-17

97.67

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Query:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP
        +RLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP
Subjt:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP

A9LYI1 Photosystem II CP43 reaction center protein

1.9e-17

97.67

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Query:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP
        +RLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP
Subjt:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP

Q3V538 Photosystem II CP43 reaction center protein

1.9e-17

97.67

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Query:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP
        +RLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP
Subjt:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

1.3e-18

97.67

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Query:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP
        +RLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP
Subjt:  KRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAP

ATCG01060.1 iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding

2.0e-14

89.74

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Query:  ITHNGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRL
        I  +GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVR+
Subjt:  ITHNGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRL

Sequences

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CDS sequence

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ATGGGCCGAGGATCGATGACGAATTATCCAACTTCTACCGACATGGACCAATTTGTGAAAACTCTTGCGGATAGATTCAAAATCATCGTGTTCACTGCGAGATTGGGTCG
CTTGTTCTCAACCATTGAAGAGAAGGTGGAAAAATTCGCCAAAGATCGACGACGAATTCCTCAATTTCAACCCAACGTCGACCAATTTCCAGAAATCTTAGCAAATAGAT
TTGAAATCGTGCGGAAACCCTGTGGCCGACATTCCATTCCCCTTAGTCGTAGGTGCTCATTCGATTTTGATTTGAATGGGCCGGGTCTCCCGAGGCGAGGTACATATGGC
CGGCCCTTCGGGTCCCCAGATACCGTCATTTTCACGACCCTTAGGCCTTCTACCTCCACGCGGCTAGCGCAAAAGAGTAGCCGCTGCGATGCCTATGCAATTTTCTTTTC
TATAGAGCTTGGGCCCACGCACAAACTCCTATCGAAAAGCTACTTCAAAGCCAAAGAGGAAGTTTCTTCTGATTGGAAGGTTTCCGCTGTAGCAGTAAAGAAGAAGGAAA
TTTCTGCTGCTAAAATCAGACCTTCGTATTTCTTTGAGAGAGTGGAGATCGGATTTCTCTTCCAATCTCCCTTAGGACCCATGGCTTCGTGCCAATTTTTTTGGCTAATG
GCCTCTTGCCACGTGGCAAGTAGGTCTCTCGAGCCTTTCTTAAATGAAAGGATAAGTACCAAGAGGTATTGTTCAAACGCACTTCTAAAATGGGGCTGCAGGGTTAAACA
ACCCGAACCGCTGTCTCGTCAAATCCCTTCACTATATTTTATACAAAACTCCATAAGTCTGAATAGAATTTACCAATTCCTTTGTATTTCATTTGTAGTTGTTGCAAATT
CCAATTTGAGTATCAAAGTCTCTTTATTCCTACGTTCGTATAGCCTTGAATCCAAATACATTACCCACAATGGATGTAAAGCTAAGCAAATAGCTTCGGCTCCAAGAACA
GAAGACTGTGTTGGTTGTAAGAGATGTGAATCTGCCTGTCCGACGGATTTCTTGAGTGTTCGCCTTATTGATACGTTCTCTAAACGTCTTGGAGCTAACGTTGGATCCGC
TCAAGGACCTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAGACTATGCGTTTTTGGGATCTGCGTGCTCCAACTTTCCCCA
GTAGCCGTATCGACACGCTCGCACAGTGCATTCCCAGCAAGTGTCCCGGAGTTACTGCTGCTTGCGAAGCCAGGAGTTTCAGAGCTAACCGTAGGCAGTCCTTATGCCGA
CAAGAAAAGGGAATGACTGGAATAGCAGACAAAGTGGAATATGACTCAAACGGAAAGAAGAAATCCCCTCCACTCTTGGATTCTTGA

mRNA sequence

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Protein sequence

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MGRGSMTNYPTSTDMDQFVKTLADRFKIIVFTARLGRLFSTIEEKVEKFAKDRRRIPQFQPNVDQFPEILANRFEIVRKPCGRHSIPLSRRCSFDFDLNGPGLPRRGTYG
RPFGSPDTVIFTTLRPSTSTRLAQKSSRCDAYAIFFSIELGPTHKLLSKSYFKAKEEVSSDWKVSAVAVKKKEISAAKIRPSYFFERVEIGFLFQSPLGPMASCQFFWLM
ASCHVASRSLEPFLNERISTKRYCSNALLKWGCRVKQPEPLSRQIPSLYFIQNSISLNRIYQFLCISFVVVANSNLSIKVSLFLRSYSLESKYITHNGCKAKQIASAPRT
EDCVGCKRCESACPTDFLSVRLIDTFSKRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPTFPSSRIDTLAQCIPSKCPGVTAACEARSFRANRRQSLCR
QEKGMTGIADKVEYDSNGKKKSPPLLDS

Lsi03G011370 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome