; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G011380 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G011380
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPentatricopeptide repeat-containing protein, putative
Genome locationchr03:21636326..21637782
RNA-Seq ExpressionLsi03G011380
SyntenyLsi03G011380
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606921.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]7.0e-3692.68Show/hide
Query:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        EMDKAFKV+EKMR+EDI ADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYNAAIRN+CIAKRLREAFDLMDEM
Subjt:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

XP_008447459.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g02420 isoform X2 [Cucumis melo]1.6e-3591.46Show/hide
Query:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        EMDKAFKVVEKMR+EDIPADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYNA IRN+CIAKRL EAFDL+DEM
Subjt:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

XP_022948942.1 putative pentatricopeptide repeat-containing protein At1g02420 [Cucurbita moschata]7.0e-3692.68Show/hide
Query:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        EMDKAFKV+EKMR+EDI ADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYNAAIRN+CIAKRLREAFDLMDEM
Subjt:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

XP_022998430.1 putative pentatricopeptide repeat-containing protein At1g02420 [Cucurbita maxima]7.0e-3692.68Show/hide
Query:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        EMDKAFKV+EKMR+EDI ADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYNAAIRN+CIAKRLREAFDLMDEM
Subjt:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

XP_023522207.1 putative pentatricopeptide repeat-containing protein At1g02420 [Cucurbita pepo subsp. pepo]4.1e-3689.41Show/hide
Query:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEMNTE
        EMDKAFKV+EKMR+EDI ADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYNAAIRN+CIAKRLREAFDLMDEM  +
Subjt:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEMNTE

TrEMBL top hitse value%identityAlignment
A0A1S3BI42 putative pentatricopeptide repeat-containing protein At1g02420 isoform X17.6e-3691.46Show/hide
Query:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        EMDKAFKVVEKMR+EDIPADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYNA IRN+CIAKRL EAFDL+DEM
Subjt:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

A0A1S3BIE0 putative pentatricopeptide repeat-containing protein At1g02420 isoform X27.6e-3691.46Show/hide
Query:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        EMDKAFKVVEKMR+EDIPADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYNA IRN+CIAKRL EAFDL+DEM
Subjt:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

A0A5A7T8Z7 Putative pentatricopeptide repeat-containing protein7.6e-3691.46Show/hide
Query:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        EMDKAFKVVEKMR+EDIPADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYNA IRN+CIAKRL EAFDL+DEM
Subjt:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

A0A6J1GAM6 putative pentatricopeptide repeat-containing protein At1g024203.4e-3692.68Show/hide
Query:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        EMDKAFKV+EKMR+EDI ADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYNAAIRN+CIAKRLREAFDLMDEM
Subjt:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

A0A6J1KCH6 putative pentatricopeptide repeat-containing protein At1g024203.4e-3692.68Show/hide
Query:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        EMDKAFKV+EKMR+EDI ADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYNAAIRN+CIAKRLREAFDLMDEM
Subjt:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

SwissProt top hitse value%identityAlignment
Q9FIT7 Pentatricopeptide repeat-containing protein At5g61990, mitochondrial2.4e-1038.1Show/hide
Query:  MGEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        +G M KA  + ++M EE +  +VI Y  ++GG    G+ +KA+ +L EM   G +P+   Y   I  YC +  L EAF L DEM
Subjt:  MGEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

Q9FIX3 Pentatricopeptide repeat-containing protein At5g397103.1e-1034.94Show/hide
Query:  GEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        G+M+ A  V+E M+E+ +  DV++Y++++ G       D+A  + +EM E G  PD   Y++ I+ +C  +R +EA DL +EM
Subjt:  GEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

Q9FZ19 Putative pentatricopeptide repeat-containing protein At1g024209.2e-3173.17Show/hide
Query:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        E++KA+K+++KMREE+   DVITYT++IGGLGLIGQPDKAR +LKEMKEYGCYPDV AYNAAIRN+CIA+RL +A  L+DEM
Subjt:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

Q9LYZ9 Pentatricopeptide repeat-containing protein At5g028606.9e-1032Show/hide
Query:  GEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEMNTEQDRGAGSRP-IISW
        G +D+A ++  +M E+    DV TYT+++ G    G+ + A SI +EM+  GC P++  +NA I+ Y    +  E   + DE+N       G  P I++W
Subjt:  GEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEMNTEQDRGAGSRP-IISW

Q9SI78 Pentatricopeptide repeat-containing protein At1g627202.8e-1139.76Show/hide
Query:  GEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        G+  +A K+ E+M    +  DV TY S+I GL + G+ D+A+ +L  M   GC PDV  YN  I  +C +KR+ E   L  EM
Subjt:  GEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

Arabidopsis top hitse value%identityAlignment
AT1G02420.1 Pentatricopeptide repeat (PPR) superfamily protein6.6e-3273.17Show/hide
Query:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        E++KA+K+++KMREE+   DVITYT++IGGLGLIGQPDKAR +LKEMKEYGCYPDV AYNAAIRN+CIA+RL +A  L+DEM
Subjt:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

AT1G62720.1 Pentatricopeptide repeat (PPR-like) superfamily protein2.0e-1239.76Show/hide
Query:  GEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        G+  +A K+ E+M    +  DV TY S+I GL + G+ D+A+ +L  M   GC PDV  YN  I  +C +KR+ E   L  EM
Subjt:  GEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

AT5G16420.1 Pentatricopeptide repeat (PPR-like) superfamily protein4.9e-1131.4Show/hide
Query:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEMNTEQ
        +++ A+KV++++    +  +++TYT+I+GG    G  + A+ +L+EM + G YPD   Y   +  YC   R  EA  +MD+M   +
Subjt:  EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEMNTEQ

AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.2e-1134.94Show/hide
Query:  GEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        G+M+ A  V+E M+E+ +  DV++Y++++ G       D+A  + +EM E G  PD   Y++ I+ +C  +R +EA DL +EM
Subjt:  GEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM

AT5G61990.1 Pentatricopeptide repeat (PPR) superfamily protein1.7e-1138.1Show/hide
Query:  MGEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM
        +G M KA  + ++M EE +  +VI Y  ++GG    G+ +KA+ +L EM   G +P+   Y   I  YC +  L EAF L DEM
Subjt:  MGEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGAAATGGACAAGGCGTTTAAGGTGGTTGAGAAAATGAGGGAAGAGGATATACCTGCTGATGTGATTACGTACACCAGTATTATTGGGGGATTGGGATTGATTGG
TCAACCCGACAAAGCGAGAAGTATTTTGAAAGAAATGAAGGAGTATGGATGTTACCCTGATGTTCCAGCTTATAATGCTGCAATACGAAATTATTGCATTGCGAAGAGGC
TTCGTGAGGCTTTTGATTTGATGGATGAAATGAATACCGAGCAAGATCGTGGAGCTGGAAGTCGACCTATAATTTCTTGGGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGAAATGGACAAGGCGTTTAAGGTGGTTGAGAAAATGAGGGAAGAGGATATACCTGCTGATGTGATTACGTACACCAGTATTATTGGGGGATTGGGATTGATTGG
TCAACCCGACAAAGCGAGAAGTATTTTGAAAGAAATGAAGGAGTATGGATGTTACCCTGATGTTCCAGCTTATAATGCTGCAATACGAAATTATTGCATTGCGAAGAGGC
TTCGTGAGGCTTTTGATTTGATGGATGAAATGAATACCGAGCAAGATCGTGGAGCTGGAAGTCGACCTATAATTTCTTGGGGCTAG
Protein sequenceShow/hide protein sequence
MGEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEMNTEQDRGAGSRPIISWG