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Lsi03G011500 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G011500
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationchr03:21809632..21811018
RNA-Seq ExpressionLsi03G011500
SyntenyLsi03G011500
Gene Ontology termsGO:0005622 - intracellular (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2632145.1 unnamed protein product [Spirodela intermedia]8.4e-0652.7Show/hide
Query:  GIDGGSPENGPRYLTRSGPYHGLPEE-----AAGFPDLLIETLPLLRTEDESSVGAFKGTAFPVNV-DERAMAA
        G +G SPE GPRYLTRSGPY GLPEE     AA F   L+E LP  RT + +       TAFP    +ERAM A
Subjt:  GIDGGSPENGPRYLTRSGPYHGLPEE-----AAGFPDLLIETLPLLRTEDESSVGAFKGTAFPVNV-DERAMAA

CAA7408469.1 unnamed protein product [Spirodela intermedia]8.4e-0652.7Show/hide
Query:  GIDGGSPENGPRYLTRSGPYHGLPEE-----AAGFPDLLIETLPLLRTEDESSVGAFKGTAFPVNV-DERAMAA
        G +G SPE GPRYLTRSGPY GLPEE     AA F   L+E LP  RT + +       TAFP    +ERAM A
Subjt:  GIDGGSPENGPRYLTRSGPYHGLPEE-----AAGFPDLLIETLPLLRTEDESSVGAFKGTAFPVNV-DERAMAA

KAF2304805.1 hypothetical protein GH714_038013 [Hevea brasiliensis]1.3e-0961.54Show/hide
Query:  ENGPRYLTRS-GPYHGLPEEAAGFPDLLI--ETLPLLRTEDESSVGAFKGTAFPVNVDERAMAAM
        ++ PRYLTRS GP+ G PEEA GFPD+ +    L  L+T DESSV AFKGTA  VNVDER M A+
Subjt:  ENGPRYLTRS-GPYHGLPEEAAGFPDLLI--ETLPLLRTEDESSVGAFKGTAFPVNVDERAMAAM

KAG5591746.1 hypothetical protein H5410_042260, partial [Solanum commersonii]1.7e-0654.29Show/hide
Query:  GGSPENGPRYLTRSGPYHGLPEE---AAGFPDLLIE-TLPLLRTEDESSVGAFKGTAFPVNVD-ERAMAA
        G SPENGP+YLTRSGPYHGLPEE   A     L++    P++  ED  S+     TAFP NVD ERA+ A
Subjt:  GGSPENGPRYLTRSGPYHGLPEE---AAGFPDLLIE-TLPLLRTEDESSVGAFKGTAFPVNVD-ERAMAA

KAG5613833.1 hypothetical protein H5410_013657 [Solanum commersonii]1.7e-0652.94Show/hide
Query:  WVDGIDGGSPENGPRYLTRSGPYHGLPEEA--AGFPDLLIETLPLLRTEDESSVGAFKGTAFPVNVDE
        +V G + G P+NGP+YLTRSGPYHGLPEEA  A     L+ TLP   T +E+       TAFP NV+E
Subjt:  WVDGIDGGSPENGPRYLTRSGPYHGLPEEA--AGFPDLLIETLPLLRTEDESSVGAFKGTAFPVNVDE

TrEMBL top hitse value%identityAlignment
A0A6A6LWQ4 Uncharacterized protein6.1e-1061.54Show/hide
Query:  ENGPRYLTRS-GPYHGLPEEAAGFPDLLI--ETLPLLRTEDESSVGAFKGTAFPVNVDERAMAAM
        ++ PRYLTRS GP+ G PEEA GFPD+ +    L  L+T DESSV AFKGTA  VNVDER M A+
Subjt:  ENGPRYLTRS-GPYHGLPEEAAGFPDLLI--ETLPLLRTEDESSVGAFKGTAFPVNVDERAMAAM

A0A6A6MR52 Chlorophyll a-b binding protein, chloroplastic5.3e-0644.78Show/hide
Query:  MNLLCKCIWIISQPEGIKATT---WVDGIDGGSPENGPRYLTRSGPYHGLPEEAAGFPDLLIETLPL
        + +L K  W+  +   + A         +  GSPENGP+YLTRSGPYHGLP+E     D LIET  L
Subjt:  MNLLCKCIWIISQPEGIKATT---WVDGIDGGSPENGPRYLTRSGPYHGLPEEAAGFPDLLIETLPL

A0A7I8JNM1 Hypothetical protein4.1e-0652.7Show/hide
Query:  GIDGGSPENGPRYLTRSGPYHGLPEE-----AAGFPDLLIETLPLLRTEDESSVGAFKGTAFPVNV-DERAMAA
        G +G SPE GPRYLTRSGPY GLPEE     AA F   L+E LP  RT + +       TAFP    +ERAM A
Subjt:  GIDGGSPENGPRYLTRSGPYHGLPEE-----AAGFPDLLIETLPLLRTEDESSVGAFKGTAFPVNV-DERAMAA

A0A7I8JZG5 Hypothetical protein1.3e-0449.25Show/hide
Query:  DGGSPENGPRYLTRSGPYHGLPEEAAGFPDLLIETLPLLRTEDESSVGAFKGTAFPVNV-DERAMAA
        +G SPE GPRYLTRSGPY GLPEE  GF    +  + +L +   S V     TA P    +ERAM A
Subjt:  DGGSPENGPRYLTRSGPYHGLPEEAAGFPDLLIETLPLLRTEDESSVGAFKGTAFPVNV-DERAMAA

A0A7I8LEN2 Hypothetical protein4.1e-0652.7Show/hide
Query:  GIDGGSPENGPRYLTRSGPYHGLPEE-----AAGFPDLLIETLPLLRTEDESSVGAFKGTAFPVNV-DERAMAA
        G +G SPE GPRYLTRSGPY GLPEE     AA F   L+E LP  RT + +       TAFP    +ERAM A
Subjt:  GIDGGSPENGPRYLTRSGPYHGLPEE-----AAGFPDLLIETLPLLRTEDESSVGAFKGTAFPVNV-DERAMAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCTACTCTGCAAATGCATCTGGATCATCAGCCAACCCGAGGGGATCAAAGCTACCACCTGGGTAGATGGGATCGATGGAGGCTCACCGGAGAATGGTCCA
AGGTACTTGACACGGTCGGGACCATACCATGGGCTGCCTGAGGAAGCTGCTGGCTTTCCAGATCTCCTCATTGAGACTCTACCATTGCTACGAACCGAGGATGAG
AGCTCGGTAGGTGCATTCAAAGGAACAGCTTTTCCTGTGAATGTAGATGAAAGAGCCATGGCTGCCATGCCTACCAACTTCAACTCAAAGGAAGTAAGTCCTCAA
AGTGCTTTTGAATTGAGTTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCTACTCTGCAAATGCATCTGGATCATCAGCCAACCCGAGGGGATCAAAGCTACCACCTGGGTAGATGGGATCGATGGAGGCTCACCGGAGAATGGTCCA
AGGTACTTGACACGGTCGGGACCATACCATGGGCTGCCTGAGGAAGCTGCTGGCTTTCCAGATCTCCTCATTGAGACTCTACCATTGCTACGAACCGAGGATGAG
AGCTCGGTAGGTGCATTCAAAGGAACAGCTTTTCCTGTGAATGTAGATGAAAGAGCCATGGCTGCCATGCCTACCAACTTCAACTCAAAGGAAGTAAGTCCTCAA
AGTGCTTTTGAATTGAGTTATTGA
Protein sequenceShow/hide protein sequence
MNLLCKCIWIISQPEGIKATTWVDGIDGGSPENGPRYLTRSGPYHGLPEEAAGFPDLLIETLPLLRTEDESSVGAFKGTAFPVNVDERAMAAMPTNFNSKEVSPQ
SAFELSY