; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G011730 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G011730
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionE3 ubiquitin-protein ligase RNF181-like protein
Genome locationchr03:22087474..22090512
RNA-Seq ExpressionLsi03G011730
SyntenyLsi03G011730
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052771.1 RING finger protein 165-like protein [Cucumis melo var. makuwa]2.5e-3156.49Show/hide
Query:  STFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAG-LPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVRE
        S  R+T+RR D ++DQSLLI+LG +  +LSR P  G   + IL+ES  +P+RIT+FPLPL+EL+DP +CH+Y  RLL Y+DL   TCDI+AK ITS++ E
Subjt:  STFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAG-LPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVRE

Query:  LLAAGNVEVKFRIVAEIDHIQMYWSDQIGET
        +LAAGN+EVKFRIVA ID +QM W ++ G++
Subjt:  LLAAGNVEVKFRIVAEIDHIQMYWSDQIGET

KAE8650076.1 hypothetical protein Csa_011336 [Cucumis sativus]4.1e-2653.79Show/hide
Query:  TASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVR
        +ASTFR+++RR     +QSL IRLG I   LS SPSAGLPYEIL ES  IP+    FPLPLR++ED  LC IY+++LL+  +L  VT  II+K ITS+V 
Subjt:  TASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVR

Query:  ELLAAGNVEVKFRIVAEIDHIQMY-WSDQIGETGSWIACTGSASE
        E+L AG+ + KF +VAEIDHI+MY W+++  E  SW+   G+ SE
Subjt:  ELLAAGNVEVKFRIVAEIDHIQMY-WSDQIGETGSWIACTGSASE

TYK19474.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa]5.7e-2855.88Show/hide
Query:  ASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVRE
        ASTFR+++RR + +  QSL IRLG +   LSR PSAGLPYEIL E++ I ++   FPLPLR+LED  LC IY+V+LL+  +L  VT  II++ ITS+V E
Subjt:  ASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVRE

Query:  LLAAGNVEVKFRIVAEIDHIQMY-WSDQIGETGSWI
        +LAAG+ + KF+IVAEIDHIQMY W ++  E  SW+
Subjt:  LLAAGNVEVKFRIVAEIDHIQMY-WSDQIGETGSWI

XP_038876865.1 putative RING-H2 finger protein ATL53 [Benincasa hispida]2.7e-3363.28Show/hide
Query:  TASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVR
        TASTFR++LRR+D   DQSL IRLGF+   LSRSPS+GLPYEILYE      R T FPL LR+LEDPL C  Y+ +LL  LDL AVTCDI+A+ ITSVV 
Subjt:  TASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVR

Query:  ELLAAGNVEVKFRIVAEIDHIQMYWSDQ
        E+L +GN +VKF+I AEIDH+QM+W+++
Subjt:  ELLAAGNVEVKFRIVAEIDHIQMYWSDQ

XP_038905732.1 E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida]5.9e-4975.91Show/hide
Query:  MSSPGTASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVI
        MSS  TASTFRF+LRRHD +DDQSLLIRLGF+  +LSRSPSAGLPYEIL+ES  IPMRI MFPLPLR+LEDPLLC +YV+RLL+YLDL AV CDIIA  I
Subjt:  MSSPGTASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVI

Query:  TSVVRELLAAGNVEVKFRIVAEIDHIQMYWSDQIGET
        TS + E+LAAGN EVKFRIVA+IDHI+M+W +QIGE+
Subjt:  TSVVRELLAAGNVEVKFRIVAEIDHIQMYWSDQIGET

TrEMBL top hitse value%identityAlignment
A0A0A0L2F8 Uncharacterized protein2.0e-2653.79Show/hide
Query:  TASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVR
        +ASTFR+++RR     +QSL IRLG I   LS SPSAGLPYEIL ES  IP+    FPLPLR++ED  LC IY+++LL+  +L  VT  II+K ITS+V 
Subjt:  TASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVR

Query:  ELLAAGNVEVKFRIVAEIDHIQMY-WSDQIGETGSWIACTGSASE
        E+L AG+ + KF +VAEIDHI+MY W+++  E  SW+   G+ SE
Subjt:  ELLAAGNVEVKFRIVAEIDHIQMY-WSDQIGETGSWIACTGSASE

A0A5D3BYE9 RING finger protein 165-like protein1.2e-3156.49Show/hide
Query:  STFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAG-LPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVRE
        S  R+T+RR D ++DQSLLI+LG +  +LSR P  G   + IL+ES  +P+RIT+FPLPL+EL+DP +CH+Y  RLL Y+DL   TCDI+AK ITS++ E
Subjt:  STFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAG-LPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVRE

Query:  LLAAGNVEVKFRIVAEIDHIQMYWSDQIGET
        +LAAGN+EVKFRIVA ID +QM W ++ G++
Subjt:  LLAAGNVEVKFRIVAEIDHIQMYWSDQIGET

A0A5D3D7E9 E3 ubiquitin-protein ligase RNF181-like protein2.8e-2855.88Show/hide
Query:  ASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVRE
        ASTFR+++RR + +  QSL IRLG +   LSR PSAGLPYEIL E++ I ++   FPLPLR+LED  LC IY+V+LL+  +L  VT  II++ ITS+V E
Subjt:  ASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVRE

Query:  LLAAGNVEVKFRIVAEIDHIQMY-WSDQIGETGSWI
        +LAAG+ + KF+IVAEIDHIQMY W ++  E  SW+
Subjt:  LLAAGNVEVKFRIVAEIDHIQMY-WSDQIGETGSWI

A0A6J1G7R8 E3 ubiquitin-protein ligase MBR2-like7.1e-2450.39Show/hide
Query:  ASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVRE
        +ST R++LRR D T DQ L +RLG+    +SRSP +GLPY+IL E+    +  T+FPLPLRELEDPL CH Y+V L++ L+L +++C+ IA+ ITS+V +
Subjt:  ASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVRE

Query:  LLAAGNVEVKFRIVAEIDHIQMYWSDQ
          AA + ++KF++VA+ID+IQM+W ++
Subjt:  LLAAGNVEVKFRIVAEIDHIQMYWSDQ

A0A6J1L191 E3 ubiquitin-protein ligase At1g63170-like1.4e-2449.61Show/hide
Query:  ASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVRE
        +ST R++LRRH H  DQ L +RLG+    +S+SPSAGLPY+IL E+ + P+   +FPLPLRELEDPL CH Y+V L++ L+L +++C+ I + ITS+V +
Subjt:  ASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVRE

Query:  LLAAGNVEVKFRIVAEIDHIQMYWSDQ
          AA + + KF++V +ID+IQM+W ++
Subjt:  LLAAGNVEVKFRIVAEIDHIQMYWSDQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTCCCGGAACCGCTTCCACCTTCCGCTTCACTCTCCGCCGCCACGACCACACCGACGATCAATCTCTCCTAATTCGTTTGGGCTTTATACAACATAAGCTCTC
CCGATCGCCGTCCGCTGGACTTCCGTACGAAATCCTCTACGAATCTACCATGATTCCAATGCGAATTACTATGTTCCCTCTTCCATTGCGAGAACTCGAAGATCCGTTGC
TATGCCATATTTATGTCGTTCGATTGCTCACTTACTTGGACCTCACCGCCGTAACCTGCGATATAATCGCTAAGGTTATCACGTCTGTCGTTCGTGAATTATTGGCCGCC
GGAAACGTCGAGGTTAAGTTCCGCATTGTGGCGGAAATCGATCACATCCAAATGTATTGGAGCGACCAAATCGGTGAAACTGGATCTTGGATCGCCTGCACTGGTTCAGC
TTCAGAAGAGTCTTCCACAGATTCTTTCTCCACATTTACTGTTGTAGTCTCTGAGCTTTTATTAACAGTGCTATCATCTGCTACTTGTTTCTTATCTTCCATAAAGATCG
CATCCCTGCTGATGATAACCTTGTGGGCAGTGGGATCCCACAGGCGATACCCCTTCACACCATCAACATACCCTAAGAATAAACATCTCCTGGATTTTGGATCCAGTTTT
GTAGTTTCTTGGGCATTGTACATAACGTACACTAGACTGCCAAATATATGGAGGTTTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCTCCCGGAACCGCTTCCACCTTCCGCTTCACTCTCCGCCGCCACGACCACACCGACGATCAATCTCTCCTAATTCGTTTGGGCTTTATACAACATAAGCTCTC
CCGATCGCCGTCCGCTGGACTTCCGTACGAAATCCTCTACGAATCTACCATGATTCCAATGCGAATTACTATGTTCCCTCTTCCATTGCGAGAACTCGAAGATCCGTTGC
TATGCCATATTTATGTCGTTCGATTGCTCACTTACTTGGACCTCACCGCCGTAACCTGCGATATAATCGCTAAGGTTATCACGTCTGTCGTTCGTGAATTATTGGCCGCC
GGAAACGTCGAGGTTAAGTTCCGCATTGTGGCGGAAATCGATCACATCCAAATGTATTGGAGCGACCAAATCGGTGAAACTGGATCTTGGATCGCCTGCACTGGTTCAGC
TTCAGAAGAGTCTTCCACAGATTCTTTCTCCACATTTACTGTTGTAGTCTCTGAGCTTTTATTAACAGTGCTATCATCTGCTACTTGTTTCTTATCTTCCATAAAGATCG
CATCCCTGCTGATGATAACCTTGTGGGCAGTGGGATCCCACAGGCGATACCCCTTCACACCATCAACATACCCTAAGAATAAACATCTCCTGGATTTTGGATCCAGTTTT
GTAGTTTCTTGGGCATTGTACATAACGTACACTAGACTGCCAAATATATGGAGGTTTGAATAA
Protein sequenceShow/hide protein sequence
MSSPGTASTFRFTLRRHDHTDDQSLLIRLGFIQHKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRELEDPLLCHIYVVRLLTYLDLTAVTCDIIAKVITSVVRELLAA
GNVEVKFRIVAEIDHIQMYWSDQIGETGSWIACTGSASEESSTDSFSTFTVVVSELLLTVLSSATCFLSSIKIASLLMITLWAVGSHRRYPFTPSTYPKNKHLLDFGSSF
VVSWALYITYTRLPNIWRFE