; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G011740 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G011740
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description60S ribosomal protein L44
Genome locationchr03:22092081..22092806
RNA-Seq ExpressionLsi03G011740
SyntenyLsi03G011740
Gene Ontology termsNA
InterPro domainsIPR040411 - Uncharacterized protein At5g23160-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052773.1 60S ribosomal protein L44 [Cucumis melo var. makuwa]1.4e-5253.72Show/hide
Query:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG
        MA+SS K PPSKS   FL  CFRSS KL  +KPS IAPRNRRT SLTFRFKKSSATVPVD A PSHDELS SP+FKKPPPL LI P+AP V GEIVVDSG
Subjt:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG

Query:  YR-----------------------------------------------------------------------HKPAPKPPTNSPAKNLDRVIVIVMVAI
        Y                                                                        +KP PK  TN P KNLDRVI++VMVAI
Subjt:  YR-----------------------------------------------------------------------HKPAPKPPTNSPAKNLDRVIVIVMVAI

Query:  VVLWGRLCSILCTVALFYLGRRLRSEVE-PDGGGRGGFGGIS
        +VLWGRLC+ILCT ALFYLGRR+RSE+E   GGGRGGFGG S
Subjt:  VVLWGRLCSILCTVALFYLGRRLRSEVE-PDGGGRGGFGGIS

KAG6581554.1 hypothetical protein SDJN03_21556, partial [Cucurbita argyrosperma subsp. sororia]9.7e-3849.15Show/hide
Query:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG
        MAESSD     K RLHFL RCFRSSP +  QK  PIA  NRRT SL FRFKKSSATVP+DAAVP HDELSLSPEF   PP PLI+       GEI+VDSG
Subjt:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG

Query:  YR------------------------------------------------HKPAP--------------KPPTNSPAKNLDRVIVIVMVAIVVLWGRLCS
         +                                                H P                KPPTNSP K  D VIVIV VAIVVLWGRLC+
Subjt:  YR------------------------------------------------HKPAP--------------KPPTNSPAKNLDRVIVIVMVAIVVLWGRLCS

Query:  ILCTVALFYLGRRLRSEVEPD--GGGRGGFGGIS
        ILCT ALFYL R LRS+ E D    G G FG +S
Subjt:  ILCTVALFYLGRRLRSEVEPD--GGGRGGFGGIS

KGN58547.1 hypothetical protein Csa_002056 [Cucumis sativus]1.4e-4952.16Show/hide
Query:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG
        MA+SS+ IPPSKS LHFL  CFRSS KL T+K S IAPR RRT S TFRFKKSSATVPVD A PSHDELS  PEFKK PPL  I P+AP VGGEIVVDS 
Subjt:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG

Query:  YR--------------------------------------------------------------------HKPAPKPPTNSPAKNLDRVIVIVMVAIVVL
         +                                                                    +KP PK PT  P KN DRVI++V+VAIV+L
Subjt:  YR--------------------------------------------------------------------HKPAPKPPTNSPAKNLDRVIVIVMVAIVVL

Query:  WGRLCSILCTVALFYLGRRLRSEVEPDGGGRG
        WGRLC+ILCT ALFYLGRR+RSE+EPDGGG G
Subjt:  WGRLCSILCTVALFYLGRRLRSEVEPDGGGRG

XP_022934627.1 uncharacterized protein LOC111441760 [Cucurbita moschata]1.5e-3849.57Show/hide
Query:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG
        MAESSD     K RLHFL RCFRSSP +  QK  PIA  NRRT SL FRFKKSSATVP+DAAVP HDELSLSPEF  PPP PLI+       GEI+VDSG
Subjt:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG

Query:  YR------------------------------------------------HKPAP--------------KPPTNSPAKNLDRVIVIVMVAIVVLWGRLCS
         +                                                H P                KPPTNSP K  D VIVIV VAIVVLWGRLC+
Subjt:  YR------------------------------------------------HKPAP--------------KPPTNSPAKNLDRVIVIVMVAIVVLWGRLCS

Query:  ILCTVALFYLGRRLRSEVEPDG--GGRGGFGGIS
        ILCT ALFYL R LRS+ E D    G G FG +S
Subjt:  ILCTVALFYLGRRLRSEVEPDG--GGRGGFGGIS

XP_022949237.1 uncharacterized protein LOC111452650 [Cucurbita moschata]2.2e-3747.14Show/hide
Query:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPS-----HDELSLSPEFKKPPPLPLIRPRAPPVGGEI
        MAE+S+K+ PSK  LHFLLRCF SSPK+ T+K      R+ R  S  FRFKKSSATVP+D AVP       D+ S SPEFKKPPP PLI+ RAP V  +I
Subjt:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPS-----HDELSLSPEFKKPPPLPLIRPRAPPVGGEI

Query:  V------------------------------------------------------------VDSGYRHKPAPKPPTNSPAKNLDRVIVIVMVAIVVLWGR
        V                                                              S  R KPA KPP NSPAK LD +IVIV VAIVVLWG+
Subjt:  V------------------------------------------------------------VDSGYRHKPAPKPPTNSPAKNLDRVIVIVMVAIVVLWGR

Query:  LCSILCTVALFYLGRRLRSEVEPDGGG
        LC+ILCT ALFY  RRLRSE E +GGG
Subjt:  LCSILCTVALFYLGRRLRSEVEPDGGG

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ2 Uncharacterized protein7.0e-5052.16Show/hide
Query:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG
        MA+SS+ IPPSKS LHFL  CFRSS KL T+K S IAPR RRT S TFRFKKSSATVPVD A PSHDELS  PEFKK PPL  I P+AP VGGEIVVDS 
Subjt:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG

Query:  YR--------------------------------------------------------------------HKPAPKPPTNSPAKNLDRVIVIVMVAIVVL
         +                                                                    +KP PK PT  P KN DRVI++V+VAIV+L
Subjt:  YR--------------------------------------------------------------------HKPAPKPPTNSPAKNLDRVIVIVMVAIVVL

Query:  WGRLCSILCTVALFYLGRRLRSEVEPDGGGRG
        WGRLC+ILCT ALFYLGRR+RSE+EPDGGG G
Subjt:  WGRLCSILCTVALFYLGRRLRSEVEPDGGGRG

A0A5A7UA28 60S ribosomal protein L446.7e-5353.72Show/hide
Query:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG
        MA+SS K PPSKS   FL  CFRSS KL  +KPS IAPRNRRT SLTFRFKKSSATVPVD A PSHDELS SP+FKKPPPL LI P+AP V GEIVVDSG
Subjt:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG

Query:  YR-----------------------------------------------------------------------HKPAPKPPTNSPAKNLDRVIVIVMVAI
        Y                                                                        +KP PK  TN P KNLDRVI++VMVAI
Subjt:  YR-----------------------------------------------------------------------HKPAPKPPTNSPAKNLDRVIVIVMVAI

Query:  VVLWGRLCSILCTVALFYLGRRLRSEVE-PDGGGRGGFGGIS
        +VLWGRLC+ILCT ALFYLGRR+RSE+E   GGGRGGFGG S
Subjt:  VVLWGRLCSILCTVALFYLGRRLRSEVE-PDGGGRGGFGGIS

A0A6J1F3C2 uncharacterized protein LOC1114417607.2e-3949.57Show/hide
Query:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG
        MAESSD     K RLHFL RCFRSSP +  QK  PIA  NRRT SL FRFKKSSATVP+DAAVP HDELSLSPEF  PPP PLI+       GEI+VDSG
Subjt:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG

Query:  YR------------------------------------------------HKPAP--------------KPPTNSPAKNLDRVIVIVMVAIVVLWGRLCS
         +                                                H P                KPPTNSP K  D VIVIV VAIVVLWGRLC+
Subjt:  YR------------------------------------------------HKPAP--------------KPPTNSPAKNLDRVIVIVMVAIVVLWGRLCS

Query:  ILCTVALFYLGRRLRSEVEPDG--GGRGGFGGIS
        ILCT ALFYL R LRS+ E D    G G FG +S
Subjt:  ILCTVALFYLGRRLRSEVEPDG--GGRGGFGGIS

A0A6J1GBH7 uncharacterized protein LOC1114526501.0e-3747.14Show/hide
Query:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPS-----HDELSLSPEFKKPPPLPLIRPRAPPVGGEI
        MAE+S+K+ PSK  LHFLLRCF SSPK+ T+K      R+ R  S  FRFKKSSATVP+D AVP       D+ S SPEFKKPPP PLI+ RAP V  +I
Subjt:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPS-----HDELSLSPEFKKPPPLPLIRPRAPPVGGEI

Query:  V------------------------------------------------------------VDSGYRHKPAPKPPTNSPAKNLDRVIVIVMVAIVVLWGR
        V                                                              S  R KPA KPP NSPAK LD +IVIV VAIVVLWG+
Subjt:  V------------------------------------------------------------VDSGYRHKPAPKPPTNSPAKNLDRVIVIVMVAIVVLWGR

Query:  LCSILCTVALFYLGRRLRSEVEPDGGG
        LC+ILCT ALFY  RRLRSE E +GGG
Subjt:  LCSILCTVALFYLGRRLRSEVEPDGGG

A0A6J1IZW6 uncharacterized protein LOC1114814559.1e-3446.55Show/hide
Query:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG
        MAESSD     K RLHFL RCFRSSP +  QK   IA  NRRT SL FRFKK SATVP+DAAVP HDELS SPEF  PPP         P+ GEI+VDSG
Subjt:  MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSG

Query:  YR--------------------------------------------HKPAP----------------KPPTNSPAKNLDRVIVIVMVAIVVLWGRLCSIL
         +                                            H P                  K PTNSP    D V VIV VAIVVLWGRLC+IL
Subjt:  YR--------------------------------------------HKPAP----------------KPPTNSPAKNLDRVIVIVMVAIVVLWGRLCSIL

Query:  CTVALFYLGRRLRSEVEPD--GGGRGGFGGIS
        CT ALFYL R LRS+ E D    G G FG +S
Subjt:  CTVALFYLGRRLRSEVEPD--GGGRGGFGGIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAATCTTCTGACAAAATCCCTCCTTCCAAATCCCGACTCCATTTCCTCCTCCGTTGCTTCCGATCTTCCCCCAAACTTCATACCCAAAAGCCCTCCCCG
ATCGCCCCACGGAACCGCCGGACTTTGTCGCTTACCTTCCGATTCAAGAAGTCCTCTGCAACTGTGCCGGTCGACGCTGCCGTTCCATCTCACGATGAACTCTCT
CTTTCGCCGGAGTTCAAGAAACCACCTCCTCTGCCGCTGATTAGACCAAGAGCGCCACCGGTCGGAGGCGAGATCGTCGTGGATTCAGGCTACCGTCATAAACCG
GCGCCAAAGCCGCCGACGAATTCTCCGGCCAAGAATTTGGATCGGGTGATTGTGATTGTTATGGTGGCGATTGTGGTACTGTGGGGGCGACTCTGCAGCATACTC
TGCACGGTGGCGCTGTTCTACTTGGGACGTCGTCTGAGATCGGAAGTCGAACCGGACGGCGGCGGCAGAGGTGGTTTTGGCGGGATATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAATCTTCTGACAAAATCCCTCCTTCCAAATCCCGACTCCATTTCCTCCTCCGTTGCTTCCGATCTTCCCCCAAACTTCATACCCAAAAGCCCTCCCCG
ATCGCCCCACGGAACCGCCGGACTTTGTCGCTTACCTTCCGATTCAAGAAGTCCTCTGCAACTGTGCCGGTCGACGCTGCCGTTCCATCTCACGATGAACTCTCT
CTTTCGCCGGAGTTCAAGAAACCACCTCCTCTGCCGCTGATTAGACCAAGAGCGCCACCGGTCGGAGGCGAGATCGTCGTGGATTCAGGCTACCGTCATAAACCG
GCGCCAAAGCCGCCGACGAATTCTCCGGCCAAGAATTTGGATCGGGTGATTGTGATTGTTATGGTGGCGATTGTGGTACTGTGGGGGCGACTCTGCAGCATACTC
TGCACGGTGGCGCTGTTCTACTTGGGACGTCGTCTGAGATCGGAAGTCGAACCGGACGGCGGCGGCAGAGGTGGTTTTGGCGGGATATCTTGA
Protein sequenceShow/hide protein sequence
MAESSDKIPPSKSRLHFLLRCFRSSPKLHTQKPSPIAPRNRRTLSLTFRFKKSSATVPVDAAVPSHDELSLSPEFKKPPPLPLIRPRAPPVGGEIVVDSGYRHKP
APKPPTNSPAKNLDRVIVIVMVAIVVLWGRLCSILCTVALFYLGRRLRSEVEPDGGGRGGFGGIS